ID:

ocu-mir-501

 Coordinate:

chrX:34238787-34238895 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.8 -40.5 -40.5

Sense Strand Reads

TGTGAACGTGAAATGTGCACAGACACACATACAGGGAGCAGTTTCTGAGCCTTCTGCTCTGCTCCCCCTCTCTAATCCTTTGTCCCTGGGTGAGAATGCTTTCTGAATGCAATGCACCCGGGCAAGGATTCCAAGAGGGTGAGCCTGCTCTGCATGGAGAAGGCCAGAAGATCTTCCCATCAGCTTTCATCTGCATGCCTGCCTGCCCC
**********************************************************..((((.((((((..((((((.((.(((.(((((....(((.........)))...))))))))))))))))...)))))).)))).**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
.........................................................................AATCCTTTGTCCCTGGGTGAG................................................................................................................... 21 0 1 11.00 11 11 0
.........................................................................AATCCTTTGTCCCTGGGTGAGA.................................................................................................................. 22 0 1 10.00 10 7 3
..............................................................................................................AATGCACCCGGGCAAGGATT............................................................................... 20 0 1 10.00 10 2 8
.............................................................................................................AAATGCACCCGGGCAAGGATT............................................................................... 21 1 1 7.00 7 0 7
.........................................................................AATCCTTTGTCCCTGGGTGAGAT................................................................................................................. 23 1 1 5.00 5 5 0
.........................................................................AATCCTTTGTCCCTGGGTGA.................................................................................................................... 20 0 1 3.00 3 2 1
..............................................................................TTTGTCCCTGGGTGAGA.................................................................................................................. 17 0 1 3.00 3 3 0
.........................................................................AATCCTTTGTCCCTGGGTGAGAA................................................................................................................. 23 0 1 2.00 2 2 0
.........................................................................AATCCTTTGTCCCTGGGTGAGT.................................................................................................................. 22 1 1 2.00 2 2 0
.........................................................................AATCCTTTGTCCCTGGGTGAGAATTCGTA........................................................................................................... 29 3 1 2.00 2 0 2
..............................................................................................................AATGCACCCGGGCAAGGATTCC............................................................................. 22 0 1 2.00 2 2 0
..............................................................................................................AATGCACCCGGGCAAGGATTC.............................................................................. 21 0 1 2.00 2 0 2
........................................................................AAATCCTTTGTCCCTGGGTGAGAATGC.............................................................................................................. 27 1 1 1.00 1 0 1
........................................................................TAATCCTTTGTCCCTGGGTGAG................................................................................................................... 22 0 1 1.00 1 0 1
.........................................................................AATCCTTTGTCCCTGGGTGAGAAT................................................................................................................ 24 0 1 1.00 1 1 0
..........................................................................ATCCTTTGTCCCTGGGTGAGAT................................................................................................................. 22 1 1 1.00 1 1 0
........................................................................AAATCCTTTGTCCCTGGGTGAGAAT................................................................................................................ 25 1 1 1.00 1 0 1
..........................................................................ATCCTTTGTCCCTGGGTGAGA.................................................................................................................. 21 0 1 1.00 1 0 1
........................................................................AAATCCTTTGTCCCTGGGTGA.................................................................................................................... 21 1 2 1.00 2 0 2
........................................................................AAATCCTTTGTCCCTGGGTGAGAATGCT............................................................................................................. 28 1 1 1.00 1 0 1
.........................................................................AATCCTTTGTCCCTGGGTGTGA.................................................................................................................. 22 1 1 1.00 1 0 1
..............................................................................................................AATGCACCCGGGCAAGGAT................................................................................ 19 0 1 1.00 1 0 1
..............................................................................................................AATGCACCCGGGCAAGGATTCCC............................................................................ 23 1 1 1.00 1 0 1
.........................................................................AATCCTTTGTCCCTGGGGGAGAA................................................................................................................. 23 1 1 1.00 1 1 0

Anti-sense strand reads

ACACTTGCACTTTACACGTGTCTGTGTGTATGTCCCTCGTCAAAGACTCGGAAGACGAGACGAGGGGGAGAGATTAGGAAACAGGGACCCACTCTTACGAAAGACTTACGTTACGTGGGCCCGTTCCTAAGGTTCTCCCACTCGGACGAGACGTACCTCTTCCGGTCTTCTAGAAGGGTAGTCGAAAGTAGACGTACGGACGGACGGGG
****************************************************************..((((.((((((..((((((.((.(((.(((((....(((.........)))...))))))))))))))))...)))))).)))).********************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 01:01 AM