ID:

ocu-mir-500

 Coordinate:

chrX:34243923-34244013 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-48.3
mature
star
  1. chrX:34237557-34237577 +
  2. chrX:34243980-34244000 +

Sense Strand Reads

AGTAACAGAGAACCTTCTCCACATGGGGCACCGTAGGGGGCCTGAGCCTTCTGCTCTGCTCCCCCTCTCTAATCCTTGCTATCTGGGTGCTAGTGCTATCTCAATGCAATGCACCTGGGCAAGGATTCAGAGAGGGTGAGCTTGACTGCATCAAGAAGGACAGGGCCTATACCTCACCCCTCCCTCCCTTG
*******************************************************..((((.(((((((((((((((((...((((((((...(((.........)))..))))))))))))))))).)))))))).))))..************************************************ 		Read size # Mismatch Hit Count Total Norm Total GSM1528821
Adult_testes_Mili_IP		 GSM1528820
Adult_testes
......................................................................AATCCTTGCTATCTGGGTGCTA................................................................................................... 22 0 1 33.00 33 30 3
......................................................................AATCCTTGCTATCTGGGTGCTAGT................................................................................................. 24 0 1 28.00 28 5 23
...........................................................................................................AATGCACCTGGGCAAGGATTC............................................................... 21 0 2 13.50 27 17 10
...........................................................................................................AATGCACCTGGGCAAGGATT................................................................ 20 0 3 13.00 39 33 6
...........................................................................................................AATGCACCTGGGCAAGGATTCA.............................................................. 22 0 2 12.50 25 25 0
...........................................................................................................AATGCACCTGGGCAAGGGTTCA.............................................................. 22 1 2 9.00 18 2 16
......................................................................AATCCTTGCTATCTGGGTGCTAT.................................................................................................. 23 1 1 9.00 9 0 9
...........................................................................................................AATGCACCTGGGCAAGGAT................................................................. 19 0 3 8.33 25 17 8
......................................................................AATCCTTGCTATCTGGGTGCTAG.................................................................................................. 23 0 1 4.00 4 1 3
...........................................................................................................AATGCACCTGGGCAAGGATTCAG............................................................. 23 0 2 4.00 8 0 8
......................................................................AATCCTTGCTATCTGGGTGCT.................................................................................................... 21 0 1 3.00 3 3 0
....................................................................ATAATCCTTGCTATCTGGGTGCTAGT................................................................................................. 26 1 1 2.00 2 2 0
......................................................................AATCCTTGCTATCTGGGTGCTTT.................................................................................................. 23 2 1 2.00 2 0 2
......................................................................AATCCTTGCTATCTGGGTGCTAGTGT............................................................................................... 26 1 1 2.00 2 0 2
...........................................................................................................AATGCACCTGGGCAAGGATTCAGT............................................................ 24 1 2 2.00 4 0 4
...........................................................................................................AATGCACCTGGGCAAGGGTTC............................................................... 21 1 2 2.00 4 0 4
...........................................................................................................AATGCACCTGGGCAAGGA.................................................................. 18 0 7 1.14 8 8 0
.....................................................................TAATCCTTGCTATCTGGGTGCTAG.................................................................................................. 24 0 1 1.00 1 1 0
......................................................................AATCCTTGCTATCTGGGTG...................................................................................................... 19 0 1 1.00 1 0 1
.....................................................................................................CACTATAATGCACCTGGGCAAGGAT................................................................. 25 3 1 1.00 1 1 0
...........................................................................................................AATGCACCTGGGCAAGGGTT................................................................ 20 1 3 1.00 3 0 3
.....................................................................TAATCCTTGCTATCTGGGTGC..................................................................................................... 21 0 1 1.00 1 1 0
..........................................................................................................AAATGCACCTGGGCAAGGATTC............................................................... 22 1 2 1.00 2 2 0
.....................................................................AAATCCTTGCTATCTGGGTGCTAG.................................................................................................. 24 1 1 1.00 1 1 0
...............................................................................................................CACCTGGGCAAGGATTCA.............................................................. 18 0 2 1.00 2 0 2
.....................................................................TAATCCTTGCTATCTGGGTGCTA................................................................................................... 23 0 1 1.00 1 1 0
................................................................................................................ACCTGGGCAAGGATTCA.............................................................. 17 0 2 1.00 2 0 2
.....................................................................TAATCCTTGCTATCTGGGTG...................................................................................................... 20 0 1 1.00 1 1 0
............................................................................................................ATGCACCTGGGCAAGGATT................................................................ 19 0 3 0.67 2 2 0
...........................................................................................................AATGAACCTGGGCAAGGATTC............................................................... 21 1 2 0.50 1 0 1
............................................................................................................ATGCACCTGGGCAAGGATTCA.............................................................. 21 0 2 0.50 1 0 1
...............................................................................................................CACCTGGGCAAGGATTCAG............................................................. 19 0 2 0.50 1 0 1
...........................................................................................................AATGCACATGGGCAAGGATTCA.............................................................. 22 1 2 0.50 1 1 0
...........................................................................................................AATGCCCCTGGGCAAGGATT................................................................ 20 1 3 0.33 1 1 0
..........................................................................................................AAATGCACCTGGGCAAGGAT................................................................. 20 1 6 0.33 2 2 0
...........................................................................................................AATGCACCTGGGCAAGGATTCATGG........................................................... 25 2 3 0.33 1 1 0
...........................................................................................................AATGCACCTGGGCAAGGGT................................................................. 19 1 8 0.25 2 0 2
..........................................................................................................AAATGCACCTGGGCAAGGATT................................................................ 21 1 4 0.25 1 1 0
...........................................................................................................AATGCACCTGGTCAAGGAT................................................................. 19 1 4 0.25 1 1 0
...........................................................................................................AATGCACCTGGGCAAGGGTTCAA............................................................. 23 2 4 0.25 1 0 1
........................................................................................................ACAAATGCACCTGGGCAAGGATTC............................................................... 24 3 6 0.17 1 1 0
...........................................................................................................AATGCACCTGGGCAAGG................................................................... 17 0 7 0.14 1 1 0
.............................................................................................................TGCACCTGGGCAAGGA.................................................................. 16 0 8 0.13 1 0 1
...........................................................................................................ACTGCACCTGGGCAAGGGTT................................................................ 20 2 15 0.07 1 1 0
......................................................................................................ATGCCAATGCACCTGGGCAAGGAT................................................................. 24 3 20 0.05 1 1 0

Anti-sense strand reads

TCATTGTCTCTTGGAAGAGGTGTACCCCGTGGCATCCCCCGGACTCGGAAGACGAGACGAGGGGGAGAGATTAGGAACGATAGACCCACGATCACGATAGAGTTACGTTACGTGGACCCGTTCCTAAGTCTCTCCCACTCGAACTGACGTAGTTCTTCCTGTCCCGGATATGGAGTGGGGAGGGAGGGAAC
************************************************..((((.(((((((((((((((((...((((((((...(((.........)))..))))))))))))))))).)))))))).))))..******************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 01:02 AM