ID:

ocu-mir-497a

 Coordinate:

chr19:12026186-12026269 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-43.9 -43.1 -43.0

Sense Strand Reads

GGGTCTTCACAGCGCTGCCTTGTGTCTTCTTCCTCTCAACCCACCCGAATCCTGCTCCCGCCCCAGCAGCACACTGTGGTTTGTACGGCACTGTGGCCACGTCCAAACCACACTGTGGTGTTAGAGCGAGGGTGGGGGAGGCACCGCCGAGGCTTGGCCCTGGGAGGCCACCCTGGAGAAGTGA
************************************************.((((((((.(((...((((.((((.(((((((((.(((((......)))..)).))))))))).)))).))))...))).))))))))..********************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
...............................................................CAGCAGCACACTGTGGTTTGT.................................................................................................... 21 0 1 2367.00 2367 2352 15
...............................................................CAGCAGCACACTGTGGTTTGTAT.................................................................................................. 23 1 1 251.00 251 251 0
................................................................AGCAGCACACTGTGGTTTGT.................................................................................................... 20 0 1 209.00 209 209 0
...............................................................CAGCAGCACACTGTGGTTTGTA................................................................................................... 22 0 1 98.00 98 96 2
................................................................AGCAGCACACTGTGGTTTGTAC.................................................................................................. 22 0 1 65.00 65 65 0
...............................................................CAGCAGCACACTGTGGTTTG..................................................................................................... 20 0 1 43.00 43 41 2
...............................................................CAGCAGCACACTGTGGTTTGTT................................................................................................... 22 1 1 27.00 27 27 0
...............................................................CAGCAGCACACTGTGGTTT...................................................................................................... 19 0 1 24.00 24 23 1
...............................................................CAGCAGCACACTGTGGTTTGTAC.................................................................................................. 23 0 1 24.00 24 24 0
................................................................AGCAGCACACTGTGGTTTGTAT.................................................................................................. 22 1 1 17.00 17 17 0
...............................................................CAGCAGCACACTGTGGTTTGTAA.................................................................................................. 23 1 1 9.00 9 9 0
...............................................................CAGCAGCACACTGCGGTTTGT.................................................................................................... 21 1 1 8.00 8 8 0
...............................................................CAGCAGCACACTGTGGT........................................................................................................ 17 0 2 7.50 15 15 0
................................................................AGCAGCACACTGTGGTTTGTT................................................................................................... 21 1 1 7.00 7 7 0
................................................................AGCAGCACACTGTGGTTTGTA................................................................................................... 21 0 1 7.00 7 5 2
..............................................................ACAGCAGCACACTGTGGTTTGT.................................................................................................... 22 1 2 5.50 11 11 0
......................................................................................................CCAAACCACACTGTGGTGTTAG............................................................ 22 0 1 5.00 5 5 0
.................................................................GCAGCACACTGTGGTTTGT.................................................................................................... 19 0 1 5.00 5 5 0
...............................................................CAGCAGAACACTGTGGTTTGT.................................................................................................... 21 1 1 4.00 4 4 0
................................................................AGCAGCACACTGTGGTTT...................................................................................................... 18 0 1 4.00 4 4 0
..............................................................ACAGCAGCACACTGTGGTTTGTA................................................................................................... 23 1 1 4.00 4 3 1
.......................................................................................................CAAACCACACTGTGGTGTTGGA........................................................... 22 1 1 4.00 4 4 0
..............................................................ACAGCAGCACACTGTGGTTTGTAT.................................................................................................. 24 2 1 4.00 4 4 0
...............................................................CAGCCGCACACTGTGGTTTGT.................................................................................................... 21 1 1 3.00 3 3 0
.....................................................................CACACTGTGGTTTGTAC.................................................................................................. 17 0 1 3.00 3 3 0
...............................................................CAGCAGCCCACTGTGGTTTGT.................................................................................................... 21 1 1 3.00 3 3 0
...............................................................CAGCAGCACATTGTGGTTTGT.................................................................................................... 21 1 1 3.00 3 3 0
...............................................................CAGCAGCACACTGTGGTTTGA.................................................................................................... 21 1 1 3.00 3 3 0
...............................................................CAGCAGCATACTGTGGTTTGTAT.................................................................................................. 23 2 1 3.00 3 3 0
...............................................................CAGCAGCACACTGTGGTT....................................................................................................... 18 0 2 3.00 6 6 0
...............................................................CAGCAGCACACTGTGGTTTGTAG.................................................................................................. 23 1 1 3.00 3 3 0
...............................................................CAGCAGCACACTGTGTTTTGTAC.................................................................................................. 23 1 1 3.00 3 3 0
...............................................................CAGCAGCACACTGTGGCTTGT.................................................................................................... 21 1 1 3.00 3 3 0
.......................................................................................................CAAACCACACTGTGGTGTTA............................................................. 20 0 1 3.00 3 2 1
...............................................................CAGCAGCACACTGTGGTCTGT.................................................................................................... 21 1 1 2.00 2 2 0
....................................................................GCACACTGTGGTTTGT.................................................................................................... 16 0 2 2.00 4 4 0
................................................................AGCAGCACACTGTGGTTTGTAA.................................................................................................. 22 1 1 2.00 2 2 0
.......................................................................................................CAAACCACACTGTGGTGTTAGA........................................................... 22 0 1 2.00 2 2 0
...............................................................CAGAAGCACACTGTGGTTTGT.................................................................................................... 21 1 1 2.00 2 2 0
...............................................................CAGCAGCACACTGTGGTTTGTAAT................................................................................................. 24 2 1 2.00 2 2 0
...............................................................CAGCCGCACACTGTGGTTTGTA................................................................................................... 22 1 1 2.00 2 2 0
...............................................................CAGCAGCACACTGTGTTTTGT.................................................................................................... 21 1 2 2.00 4 4 0
...............................................................CAGCAGCACACTGTGGTTTGTAGT................................................................................................. 24 2 1 2.00 2 2 0
...............................................................CAGCAGCACTCTGTGGTTTGT.................................................................................................... 21 1 1 2.00 2 2 0
................................................................AGCCGCACACTGTGGTTTGT.................................................................................................... 20 1 1 2.00 2 2 0
...............................................................CAGCAGCACCCTGTGGTTTGT.................................................................................................... 21 1 2 2.00 4 4 0
...............................................................CAGCAGCACACTGGGGTTTGT.................................................................................................... 21 1 1 2.00 2 2 0
...............................................................CAGCAGCACACTGTAGTTTGT.................................................................................................... 21 1 1 2.00 2 2 0
................................................................AGCAGCACACTGTGGTTTGTG................................................................................................... 21 1 3 1.67 5 5 0
................................................................AGCAGCACACTGTGGTT....................................................................................................... 17 0 2 1.50 3 3 0
...............................................................CAGCAGCACACTGTGGTTTGC.................................................................................................... 21 1 2 1.50 3 3 0
...............................................................CAGCAGCACACTGTGGTTTGTGA.................................................................................................. 23 2 2 1.50 3 3 0
...............................................................CAGCAGCACACTGTGGTTTGTTT.................................................................................................. 23 2 2 1.50 3 3 0
...............................................................CAGCAGCACACCGTGGTTTGT.................................................................................................... 21 1 1 1.00 1 1 0
......................................................................................................CCAAACCACACTGTGGTGTTAGTT.......................................................... 24 2 1 1.00 1 1 0
.................................................................GCAGCACACTGTGGTTTGTA................................................................................................... 20 0 1 1.00 1 1 0
...............................................................CAGCAGCACACTGTTGTTTGT.................................................................................................... 21 1 1 1.00 1 1 0
...............................................................CACCAGCACACTGTGGTTTGT.................................................................................................... 21 1 1 1.00 1 1 0
...............................................................CAGCAGCACACTGTGGTTTGG.................................................................................................... 21 1 1 1.00 1 1 0
...............................................................CAGCAGCACACTGTGGGTTGT.................................................................................................... 21 1 1 1.00 1 1 0
...............................................................CGGCAGCACACTGTGGTTTGT.................................................................................................... 21 1 1 1.00 1 1 0
............................................................CCCCAGCAGCACACTGCGGTTTGT.................................................................................................... 24 1 1 1.00 1 1 0
......................................................................................................CCAAACCACACTGTGGTGTTAGT........................................................... 23 1 1 1.00 1 1 0
...............................................................CAGCAGCACACTGTGGTTTCT.................................................................................................... 21 1 1 1.00 1 1 0
...............................................................CAGCAGCACACTGAGGTTTGT.................................................................................................... 21 1 1 1.00 1 1 0
................................................................AGCAGCACACTGTGGTTTGC.................................................................................................... 20 1 2 1.00 2 2 0
...............................................................CAGCAGCACACTGTAGTTTGTA................................................................................................... 22 1 1 1.00 1 1 0
...............................................................CAGCAGCACACTGCGGTTTGTA................................................................................................... 22 1 1 1.00 1 1 0
.....................................................................................................TCCAAACCACACTGTGGTGT............................................................... 20 0 1 1.00 1 0 1
...............................................................CAGCAGCACACTGCGGTTTGTAT.................................................................................................. 23 2 1 1.00 1 1 0
...............................................................CAGCAGCACATTGTGGTTTGTA................................................................................................... 22 1 1 1.00 1 1 0
...............................................................CAGCAGCACACTGTGGTTTAT.................................................................................................... 21 1 1 1.00 1 1 0
................................................................AGCAGCACACTGTGGTTTGTTA.................................................................................................. 22 2 1 1.00 1 1 0
...............................................................CAGCAACACACTGTGGTTTGTAT.................................................................................................. 23 2 1 1.00 1 1 0
................................................................AGCAGCATACTGTGGTTTGT.................................................................................................... 20 1 1 1.00 1 1 0
................................................................AGCAGCGCACTGTGGTTTGT.................................................................................................... 20 1 1 1.00 1 1 0
.......................................................................................................CCAACCACACTGTGGTGTTA............................................................. 20 1 1 1.00 1 1 0
................................................................AGCAGCACACTGTGGGTTGT.................................................................................................... 20 1 1 1.00 1 1 0
...............................................................CAGCAGCACACTGTGGTTTGTC................................................................................................... 22 1 1 1.00 1 1 0
...............................................................CAGCAGCACAGTGTGGTTTGTAT.................................................................................................. 23 2 1 1.00 1 1 0
...............................................................CAGCCGCACACTGTGGTTTGTAT.................................................................................................. 23 2 1 1.00 1 1 0
.................................................................GCAGCACACTGAGGTTTGTAC.................................................................................................. 21 1 1 1.00 1 1 0
...............................................................CAGAAGCACACTGTGGTTTGTAC.................................................................................................. 23 1 1 1.00 1 1 0
...............................................................CAGCAGCACACCGTGGTTTGTAC.................................................................................................. 23 1 1 1.00 1 1 0
................................................................AGCAGCACACTGCGGTTTGT.................................................................................................... 20 1 1 1.00 1 1 0
......................................................................................................CCAAACCACACTGTGGTGTTGG............................................................ 22 1 1 1.00 1 1 0
...............................................................CAGCAGCAAACTGTGGTTTGT.................................................................................................... 21 1 1 1.00 1 1 0
..............................................................ACAGCAGCACACTGTGGTTTGTT................................................................................................... 23 2 2 1.00 2 0 2
...............................................................CTGCAGCACACTGTGGTTTGT.................................................................................................... 21 1 1 1.00 1 1 0
.....................................................................CACACTGTGGTTTGTA................................................................................................... 16 0 4 0.75 3 3 0
...............................................................CAGCAGCACACTGTGGTTTGTGT.................................................................................................. 23 2 3 0.67 2 2 0
...............................................................CAGCAGCTCACTGTGGTTTGT.................................................................................................... 21 1 2 0.50 1 1 0
...................................................................AGCACACTGTGGTTTGT.................................................................................................... 17 0 2 0.50 1 0 1
...............................................................CAGCAGCACACTCTGGTTTGT.................................................................................................... 21 1 2 0.50 1 1 0
................................................................AGCAGCACACTGTGGCTTGT.................................................................................................... 20 1 2 0.50 1 1 0
...............................................................CAGCAGCAAACTGTGGTTTGTAT.................................................................................................. 23 2 2 0.50 1 1 0
...............................................................CAGCAGCACACTATGGTTTGT.................................................................................................... 21 1 2 0.50 1 1 0
...............................................................CAGCAGCACACTGGGGTTTGTAT.................................................................................................. 23 2 2 0.50 1 1 0
...............................................................CAGCAGCGCACTGTGGTTT...................................................................................................... 19 1 3 0.33 1 1 0
.......................................................................................................CAAACCACACTGTGGGGTTGGA........................................................... 22 2 3 0.33 1 1 0
.......................................................................CACTGTGGTTTGTAC.................................................................................................. 15 0 7 0.29 2 2 0
....................................................................GCACACTGTGGTTTGTAT.................................................................................................. 18 1 9 0.22 2 2 0
..............................................................ACAGCAGCACACTGTGGTT....................................................................................................... 19 1 7 0.14 1 1 0
...............................................................CAGCAGCACGCTGTGGTT....................................................................................................... 18 1 9 0.11 1 1 0
...............................................................CAGCAGCACACTGTG.......................................................................................................... 15 0 19 0.05 1 1 0

Anti-sense strand reads

CCCAGAAGTGTCGCGACGGAACACAGAAGAAGGAGAGTTGGGTGGGCTTAGGACGAGGGCGGGGTCGTCGTGTGACACCAAACATGCCGTGACACCGGTGCAGGTTTGGTGTGACACCACAATCTCGCTCCCACCCCCTCCGTGGCGGCTCCGAACCGGGACCCTCCGGTGGGACCTCTTCACT
*********************************************.((((((((.(((...((((.((((.(((((((((.(((((......)))..)).))))))))).)))).))))...))).))))))))..************************************************ 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:38 AM