ID:

ocu-mir-490

 Coordinate:

chr7:1159588-1159671 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-38.4 -38.2 -38.0
mature
star
  1. chr3:155040491-155040512 +
  2. chr7:1159646-1159667 +

Sense Strand Reads

AACGGTTTGTGAAGAGGAGCTGCCCTCACTTTGTGGAGGCCTTGCTGGCTTGGAAAGTTCATTGTTCGACACCATGGATCTCCAGGTGGGTCACGTTTAGAGATGCACCAACCTGGAGGACTCCATGCTGTTGAGCTGTTCACGAGCAGCGGACTCTTCTACCTCCACCTTCCCAAGAATTAAA
********************************************************((..((.((((((((.(((((((((((((((.(((..((((....)))).))).)))))))))..)))))).)))))))).))..))..*************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes
.......................................................................CCATGGATCTCCAGGTGGGT............................................................................................. 20 0 1 4.00 4 4
.......................................................................CCATGGATCTCCAGGTGGG.............................................................................................. 19 0 1 2.00 2 2
.......................................................................CCATGGATCTCCAGGT................................................................................................. 16 0 1 1.00 1 1
.......................................................................CCATGGATCTCCAGGTGG............................................................................................... 18 0 1 1.00 1 1
............................................................................................................CAACCTGGAGGACTCCATGCTG...................................................... 22 0 2 0.50 1 1

Anti-sense strand reads

TTGCCAAACACTTCTCCTCGACGGGAGTGAAACACCTCCGGAACGACCGAACCTTTCAAGTAACAAGCTGTGGTACCTAGAGGTCCACCCAGTGCAAATCTCTACGTGGTTGGACCTCCTGAGGTACGACAACTCGACAAGTGCTCGTCGCCTGAGAAGATGGAGGTGGAAGGGTTCTTAATTT
***************************************((..((.((((((((.(((((((((((((((.(((..((((....)))).))).)))))))))..)))))).)))))))).))..))..******************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:47 AM