ID:

ocu-mir-455

 Coordinate:

chrUn0001:13398632-13398714 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-41.2

Sense Strand Reads

CTTCCTCCTGCAGGTCCTGGAGCCCTGGCACGGGGCAGGCGCCCGTGCCCTTCCCTGGCGTGAGGGTATGTGCCTTTGGACTACATCGTGGAAGCCAGCACCATGCAGTCCATGGGCATATACACTTGCCTCAAGGCCTATGTCATCGAGGAGCCACCACTGCCACTGCGAGGAAGAGGAGCC
**************************************************......(((.(((((((((((((((.((((((.(((.(((........))).))).)))))).)))))))))).....)))))..)))..******************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
.................................................................GTATGTGCCTTTGGACTACAT................................................................................................. 21 0 1 61.00 61 60 1
.................................................................GTATGTGCCTTTGGACTACATCGT.............................................................................................. 24 0 1 12.00 12 11 1
.................................................................GTATGTGCCTTTGGACTACATT................................................................................................ 22 1 1 10.00 10 10 0
......................................................................................................ATGCAGTCCACGGGCATATAC............................................................ 21 1 1 7.00 7 7 0
........................................................................................................GCAGTCCATGGGCATATACAC.......................................................... 21 0 1 6.00 6 4 2
.......................................................................................................TGCAGTCCATGGGCATATACAC.......................................................... 22 0 1 6.00 6 6 0
........................................................................................................GCAGTCCATGGGCATATACACT......................................................... 22 0 1 6.00 6 6 0
..................................................................TATGTGCCTTTGGACTACAT................................................................................................. 20 0 1 5.00 5 5 0
..................................................................TATGTGCCTTTGGACTACATA................................................................................................ 21 1 1 5.00 5 5 0
.........................................................................................................CAGTCCATGGGCATATACACC......................................................... 21 1 1 5.00 5 5 0
........................................................................................................GCAGTCCACGGGCATATAC............................................................ 19 1 1 5.00 5 5 0
........................................................................................................GCAGTCCATGGGCATATACACC......................................................... 22 1 1 5.00 5 5 0
........................................................................................................GCAGTCCATGGGCATATACA........................................................... 20 0 1 4.00 4 1 3
..................................................................TATGTGCCTTTGGACTACATCGT.............................................................................................. 23 0 1 4.00 4 3 1
....................................................................TGTGCCTTTGGACTACATCGTGT............................................................................................ 23 1 1 4.00 4 4 0
....................................................................TGTGCCTTTGGACTACATCGT.............................................................................................. 21 0 1 3.00 3 3 0
...................................................................ATGTGCCTTTGGACTACATCGGT............................................................................................. 23 2 1 3.00 3 3 0
....................................................................................................CCATGCAGTCCATGGGCATAT.............................................................. 21 0 1 3.00 3 3 0
......................................................................................................ATGCAGTCCATGGGCATATACAC.......................................................... 23 0 1 2.00 2 2 0
...................................................................ATGTGCCTTTGGACTACATCGT.............................................................................................. 22 0 1 2.00 2 2 0
................................................................AGTATGTGCCTTTGGACTAC................................................................................................... 20 1 1 2.00 2 2 0
.................................................................GTATGTGCCTTTGGACTACATTT............................................................................................... 23 2 1 2.00 2 2 0
.........................................................................................................CAGTCCATGGGCATATACAC.......................................................... 20 0 1 2.00 2 0 2
......................................................................................................ATGCAGTCCACGGGCATATA............................................................. 20 1 1 2.00 2 2 0
........................................................................................................GCAGTCCACGGGCATATACAC.......................................................... 21 1 1 2.00 2 2 0
........................................................................................................GCAGTCCATGGGCATATACACCA........................................................ 23 2 1 2.00 2 1 1
......................................................................................................ATGCAGTCCATGGGCATATAC............................................................ 21 0 1 2.00 2 0 2
.................................................................GTATGTGCCTTTGGACTACATCG............................................................................................... 23 0 1 2.00 2 2 0
.................................................................GTATGTGCCTTTGGACTACACC................................................................................................ 22 1 1 2.00 2 2 0
.................................................................GTATGTGCCTTTGGACTACATAT............................................................................................... 23 2 2 1.50 3 3 0
........................................................................................................GCAGTACATGGGCATATACACCT........................................................ 23 2 1 1.00 1 1 0
.................................................................GTATGTGCCTTTGGACTACATCGTG............................................................................................. 25 0 1 1.00 1 1 0
......................................................................................................ATGCAGTCCATGGGCATAT.............................................................. 19 0 1 1.00 1 1 0
.........................................................................................................CAGTCCATGGGCATAT.............................................................. 16 0 1 1.00 1 1 0
.................................................................GTATGTGCCTTTGGACTACATAG............................................................................................... 23 1 1 1.00 1 1 0
...........................................................................................................GTCCATGGGCATATACAC.......................................................... 18 0 1 1.00 1 0 1
......................................................................................................ATGCAGTCCATGGGCATATACA........................................................... 22 0 1 1.00 1 0 1
..................................................................TATGTGCCTTTGGACTACATCGAT............................................................................................. 24 2 1 1.00 1 1 0
.....................................................................................................CATGCAGTCCATGGGCATATA............................................................. 21 0 1 1.00 1 0 1
.................................................................GTATCTGCCTTTGGACTACAT................................................................................................. 21 1 1 1.00 1 1 0
.......................................................................................................TGCAGTCCATGGGCATATAC............................................................ 20 0 1 1.00 1 0 1
........................................................................................................GCAGTCCATGGGCATATA............................................................. 18 0 1 1.00 1 0 1
..................................................................TATGTGCCTTTGGACTACATCGTGA............................................................................................ 25 1 1 1.00 1 0 1
.................................................................GTATGTGCCTTTGGACTACATCGTGA............................................................................................ 26 1 1 1.00 1 0 1
........................................................................................................GCAGTCCATGGGCATATAC............................................................ 19 0 1 1.00 1 1 0
........................................................................................................GCAGTCCATGGGCATATACACCT........................................................ 23 1 1 1.00 1 1 0
....................................................................TGTGCCTTTGGACTACATCG............................................................................................... 20 0 1 1.00 1 0 1
.................................................................GTATGGGCCTTTGGACTACAT................................................................................................. 21 1 1 1.00 1 1 0
..................................................................TATGTTCCTTTGGACTACATCGA.............................................................................................. 23 2 1 1.00 1 1 0
.....................................................................................................CATGCAGTCCACGGGCATATA............................................................. 21 1 1 1.00 1 1 0
.................................................................GTATGCGCCTTTGGACTACATAG............................................................................................... 23 2 1 1.00 1 1 0
.................................................................GTATGTGCCTTTTGACTACAT................................................................................................. 21 1 1 1.00 1 1 0
...................................................................ATGCGCCTTTGGACTACATCGGT............................................................................................. 23 3 1 1.00 1 1 0
....................................................................TGTGCCTTTGGACTACATCGTGAT........................................................................................... 24 2 1 1.00 1 1 0
..................................................................TATGTGCCTTTGGACTACATC................................................................................................ 21 0 1 1.00 1 1 0
.................................................................GTATGTGCCTTTGGACTAC................................................................................................... 19 0 1 1.00 1 1 0
........................................................................................................GCAGTCAATGGGCATATACACT......................................................... 22 1 1 1.00 1 1 0
.........................................................................................................CAGTCCACGGGCATATACAC.......................................................... 20 1 1 1.00 1 1 0
..............................................................................................ACAGGACCAAGCAGTCCATGGGCAT................................................................ 25 3 2 0.50 1 0 1
.................................................................GTATGTGCCTTTGGACTACAAT................................................................................................ 22 2 2 0.50 1 1 0
........................................................................................................GCATTCCATGGGCATATACACC......................................................... 22 2 2 0.50 1 1 0

Anti-sense strand reads

GAAGGAGGACGTCCAGGACCTCGGGACCGTGCCCCGTCCGCGGGCACGGGAAGGGACCGCACTCCCATACACGGAAACCTGATGTAGCACCTTCGGTCGTGGTACGTCAGGTACCCGTATATGTGAACGGAGTTCCGGATACAGTAGCTCCTCGGTGGTGACGGTGACGCTCCTTCTCCTCGG
*******************************************......(((.(((((((((((((((.((((((.(((.(((........))).))).)))))).)))))))))).....)))))..)))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:51 AM