ID:

ocu-mir-450a-2

Coordinate:

chrX:108850338-108850406 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-35.0

mature

star

Sense Strand Reads

GGGTTGTCTCAGAGCTGTGCACTGTAGTAAAGTGATCAAAGAAGGATGCTAAACTATTTTTGCGATGTGTTCCTAATATGTAATATAAATGTATTGGGAACATTTTGCATTCATAGTTTTGTATCAATAATACGGACAAAAGACTAGGAAGGAGAGCGCCTGGACTCTA ****************************************..(((((.(((((((...(((((.(((((((((((((((.......))))))))))))))).)))))...))))))).)))))...***************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM1528820 Adult_testes	GSM1528821 Adult_testes_Mili_IP
.........................................................TTTTGCGATGTGTTCCTAAT............................................................................................	20	0	2	89.00	178	172	6
.........................................................TTTTGCGATGTGTTCCTAATAT..........................................................................................	22	0	2	40.50	81	81	0
.........................................................TTTTGCGATGTGTTCCTAATA...........................................................................................	21	0	2	15.00	30	27	3
........................................................ATTTTGCGATGTGTTCCTAAT............................................................................................	21	1	2	6.50	13	8	5
..........................................................TTTGCGATGTGTTCCTAAT............................................................................................	19	0	2	4.50	9	9	0
..........................................................TTTGCGATGTGTTCCTAATAT..........................................................................................	21	0	2	2.00	4	4	0
...................................................ATCAAATTTTGCGATGTGTTCCTAAT............................................................................................	26	3	1	2.00	2	2	0
.........................................................TTTTGCGATGTGTTCCTAA.............................................................................................	19	0	2	2.00	4	3	1
.........................................................TTTTTCGATGTGTTCCTAAT............................................................................................	20	1	2	1.50	3	3	0
.....................................................CGCATTTTGCGATGTGTTCCTAAT............................................................................................	24	3	2	1.50	3	3	0
.........................................................TTTTGCGATGTGTTCCTA..............................................................................................	18	0	2	1.50	3	1	2
.......................................................ATTTTTGCGATGTGTTC.................................................................................................	17	0	1	1.00	1	1	0
.........................................................TTTTGCGATGTGTTCCTAATATAGGA......................................................................................	26	3	1	1.00	1	0	1
.............................................................................................TTGGGAACATTTTGCATTCA........................................................	20	0	1	1.00	1	0	1
.......................................................ATTTTTGCGATGTGTTCCTAAT............................................................................................	22	0	1	1.00	1	1	0
..........................................................TTTGCGATGTGTTCCTAAA............................................................................................	19	1	3	1.00	3	3	0
.........................................................TTTTGCGATGGGTTCCTAAT............................................................................................	20	1	2	0.50	1	1	0
....................................................AAGCTTTTTGCGATGTGTTCCTAA.............................................................................................	24	3	2	0.50	1	0	1
.............................................................................................TTGGGAACATTTTGCAT...........................................................	17	0	2	0.50	1	1	0
.........................................................TTTTGCGAAGTGTTCCTAAT............................................................................................	20	1	2	0.50	1	1	0
.........................................................TTTTGCGATGTGTTCCTAATATG.........................................................................................	23	0	2	0.50	1	0	1
............................................................................................ATTGGGAACATTTTGCA............................................................	17	0	2	0.50	1	0	1
.........................................................TTTTGTGATGTGTTCCTAAT............................................................................................	20	1	2	0.50	1	1	0
.........................................................TTTTGCGATGTGTTCCTAATAA..........................................................................................	22	1	2	0.50	1	1	0
......................................................ATATTTTGCGATGTGTTCCTAAT............................................................................................	23	3	7	0.43	3	3	0
........................................................ATTTTGCGATGTGTTCCTA..............................................................................................	19	1	3	0.33	1	0	1
.........................................................TTTTGCGATGTGTTCCTAAA............................................................................................	20	1	3	0.33	1	1	0
..........................................................TTTGCGTTGTGTTCCTAATAT..........................................................................................	21	1	3	0.33	1	1	0
.......................................................TCTTTTGCGATGTGTTCCTA..............................................................................................	20	2	3	0.33	1	0	1
.........................................................TTTTGCGATGTGTTCCTAAAT...........................................................................................	21	2	7	0.14	1	1	0

Anti-sense strand reads

CCCAACAGAGTCTCGACACGTGACATCATTTCACTAGTTTCTTCCTACGATTTGATAAAAACGCTACACAAGGATTATACATTATATTTACATAACCCTTGTAAAACGTAAGTATCAAAACATAGTTATTATGCCTGTTTTCTGATCCTTCCTCTCGCGGACCTGAGAT ***************************************..(((((.(((((((...(((((.(((((((((((((((.......))))))))))))))).)))))...))))))).)))))...****************************************	Read size	# Mismatch	Hit Count	Total Norm	Total

Generated: 05/16/2015 at 01:03 AM