ID:

ocu-mir-376b

 Coordinate:

chrUn0352:133498-133579 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-33.1 -32.9 -32.9
mature
star
  1. chrUn0352:132903-132923 +
  2. chrUn0352:133511-133531 +

Sense Strand Reads

CGCCCGCCTCTGGCCGGCTGTGTGCAGCGCCGCCTTTTCCGGTTTGTCTTTGGTATTTAAAAGGTGGATTTTCCTTCTATGTTTACGTGATTGCTGGTTAATCATAGAGGAAAATCCATGTTTTCAGTATCAAATGCTGCTCTCGAAGCCTCCCTGGAGGCCGCCGTGGGGCCTGGGTAGGC
************************************************(((((((((.((((.((((((((((((.(((((...((..........))....))))))))))))))))).)))).)))))))))..********************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
....................................................................................................ATCATGGAGGAAAATCCATGT............................................................. 21 1 1 36.00 36 36 0
....................................................................................................ATCATGGAGGAAAATCCATGTT............................................................ 22 1 1 28.00 28 28 0
....................................................................................................ATCATAGAGGAAAATCCATGT............................................................. 21 0 1 5.00 5 5 0
....................................................................................................ATCATGGAGGAAAATCCATGTTT........................................................... 23 1 1 3.00 3 3 0
....................................................................................................ATCATGGAGGAAAATCCATGTA............................................................ 22 2 2 1.50 3 3 0
....................................................................................................ATCATGGAGGAAAATCCATG.............................................................. 20 1 2 1.50 3 3 0
...............................................................GTGGATTTTCCTTCTATGTTT.................................................................................................. 21 0 2 1.50 3 3 0
....................................................................................................ATCATAGAGGAAAATCCATGTT............................................................ 22 0 1 1.00 1 1 0
....................................................................................................ATCATAGAGGAAAATCCAT............................................................... 19 0 1 1.00 1 0 1
....................................................................................................ATCATAGAGGAAAATCCATGTTT........................................................... 23 0 1 1.00 1 1 0
...............................................................GTGGATATTCCTTCTATGGTT.................................................................................................. 21 2 4 0.50 2 2 0
....................................................................................................ATCATGGCGGAAAATCCATGT............................................................. 21 2 2 0.50 1 1 0
....................................................................................................ATCACGGAGGAAAATCCATGT............................................................. 21 2 2 0.50 1 1 0
....................................................................................................ATCATGGAGGACAATCCATGTT............................................................ 22 2 3 0.33 1 1 0
....................................................................................................ATCATGGAGGAAAATCCAT............................................................... 19 1 4 0.25 1 0 1
...............................................................GTGGATATTCCTTCTATGG.................................................................................................... 19 2 20 0.15 3 3 0

Anti-sense strand reads

GCGGGCGGAGACCGGCCGACACACGTCGCGGCGGAAAAGGCCAAACAGAAACCATAAATTTTCCACCTAAAAGGAAGATACAAATGCACTAACGACCAATTAGTATCTCCTTTTAGGTACAAAAGTCATAGTTTACGACGAGAGCTTCGGAGGGACCTCCGGCGGCACCCCGGACCCATCCG
**********************************************(((((((((.((((.((((((((((((.(((((...((..........))....))))))))))))))))).)))).)))))))))..************************************************ 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:59 AM