ID:

ocu-mir-34a

 Coordinate:

chr13:140941468-140941569 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.4 -39.4 -39.1

Sense Strand Reads

TTTTTATCAGCAGGTCCCGGGAGAAGCCACGGACGCGCGCCAGGGAGGGGCCGGCTGTGAGTGTTTCTTTGGCAGTGTCTTAGCTGGTTGTTGTGAGTCACAGAGAAGGAAGCAATCAGCAAGTATACTGCCCTAGAAGTGCTGCACGTTGTGGGGCCCAGGACGCAGGGAGGCGGCGAGAGACGTCTGGACATCGTGGGCC
******************************************************.(((((((((((((..(((((((((((.((((((((((.....((.....))....))))))))))))).))))))))..))))))))).)))).***************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
.....................................................................TGGCAGTGTCTTAGCTGGTTGT............................................................................................................... 22 0 1 378.00 378 363 15
.....................................................................TGGCAGTGTCTTAGCTGGTTGTT.............................................................................................................. 23 0 1 302.00 302 298 4
......................................................................GGCAGTGTCTTAGCTGGTTGTT.............................................................................................................. 22 0 1 120.00 120 119 1
......................................................................GGCAGTGTCTTAGCTGGTTGT............................................................................................................... 21 0 1 90.00 90 89 1
.....................................................................TGGCAGTGTCTTAGCTGGT.................................................................................................................. 19 0 1 54.00 54 52 2
.....................................................................TGGCAGTGTCTTAGCTGGTTGTTT............................................................................................................. 24 1 1 45.00 45 45 0
.....................................................................TGGCAGTGTCTTAGCTGGTT................................................................................................................. 20 0 1 44.00 44 37 7
.....................................................................TGGCAGTGTCTTAGCTGGTTG................................................................................................................ 21 0 1 26.00 26 20 6
......................................................................GGCAGTGTCTTAGCTGGTTGTTT............................................................................................................. 23 1 1 11.00 11 11 0
.......................................................................GCAGTGTCTTAGCTGGTTGTT.............................................................................................................. 21 0 1 7.00 7 7 0
......................................................................GGCAGTGTCTTAGCTGGTTGTTAT............................................................................................................ 24 1 1 6.00 6 6 0
....................................................................TTGGCAGTGTCTTAGCTGGTTGT............................................................................................................... 23 0 1 6.00 6 5 1
.......................................................................GCAGTGTCTTAGCTGGTTGT............................................................................................................... 20 0 1 6.00 6 6 0
.....................................................................TGGCAGTGTCTTAGCTGGTTGTTA............................................................................................................. 24 1 1 5.00 5 5 0
........................................................................CAGTGTCTTAGCTGGTTGT............................................................................................................... 19 0 1 4.00 4 4 0
.................................................................................................................AATCAGCAAGTATACTGCCCT.................................................................... 21 0 1 4.00 4 1 3
................................................................................................................CAATCAGCAAGTATACTGCCCT.................................................................... 22 0 1 3.00 3 0 3
......................................................................GGCAGTGTCTTAGCTGGTT................................................................................................................. 19 0 1 3.00 3 2 1
.....................................................................TGGCAGTGTCTTAGCTGG................................................................................................................... 18 0 2 3.00 6 6 0
..........................................................................GTGTCTTAGCTGGTTGT............................................................................................................... 17 0 1 3.00 3 3 0
.................................................................................................................AATCAGCAAGTATACTGCCCTA................................................................... 22 0 1 3.00 3 3 0
....................................................................ATGGCAGTGTCTTAGCTGGTTGTTT............................................................................................................. 25 2 1 3.00 3 2 1
.................................................................................................................AATCAGCAAGTATACTGCCC..................................................................... 20 0 1 3.00 3 0 3
.........................................................................AGTGTCTTAGCTGGTTGT............................................................................................................... 18 0 1 3.00 3 3 0
.........................................................................AGTGTCTTAGCTGGTTGTT.............................................................................................................. 19 0 1 2.00 2 1 1
..........................................................................................................ACGGAACAATCAGCAAGTATACTGCCCTA................................................................... 29 3 1 2.00 2 0 2
......................................................................GGCAGTGTCTTAGCTGGT.................................................................................................................. 18 0 1 2.00 2 2 0
.....................................................................TGGCAGTGTCTTAGCTGGTTT................................................................................................................ 21 1 2 2.00 4 4 0
........................................................................CAGTGTCTTAGCTGGTTGTTT............................................................................................................. 21 1 1 2.00 2 2 0
.....................................................................TGGCAGTGTCTTAGCTGGTTGTTTAGT.......................................................................................................... 27 3 1 2.00 2 2 0
....................................................................................................................CAGCAAGTATACTGCCCTT................................................................... 19 1 1 2.00 2 2 0
....................................................................TTGGCAGTGTCTTAGCTGGTTGTT.............................................................................................................. 24 0 1 2.00 2 2 0
.....................................................................TGGCAGTGGCTTAGCTGGTTGT............................................................................................................... 22 1 1 2.00 2 1 1
.....................................................................TGGCAGTGTCTTAGCTGCTTGT............................................................................................................... 22 1 1 2.00 2 2 0
....................................................................TTGGCAGTGTCTTAGCTGGTT................................................................................................................. 21 0 1 2.00 2 2 0
.....................................................................TGGCAGTGTCTTAGCTGGTTGTAT............................................................................................................. 24 2 2 2.00 4 4 0
................................................................................................................AAATCAGCAAGTATACTGCCC..................................................................... 21 1 1 2.00 2 0 2
.....................................................................TGGCAGTGTCTTAGCTGGTTGG............................................................................................................... 22 1 1 2.00 2 2 0
.....................................................................TGGCAGTGTCTTAGCTGGTTGAT.............................................................................................................. 23 1 1 2.00 2 2 0
....................................................................ATGGCAGTGTCTTAGCTGGTTGTT.............................................................................................................. 24 1 1 2.00 2 2 0
....................................................................TTGGCAGTGTCTTAGCTGGTTG................................................................................................................ 22 0 1 2.00 2 0 2
......................................................................GGCAGTGTCTTAGCTGGTTGCT.............................................................................................................. 22 1 1 2.00 2 2 0
..................................................................................................................ATCAGCAAGTATACTGCCCTA................................................................... 21 0 1 2.00 2 2 0
.....................................................................TGGCAGTGTCTTAGCTGGTTGTTGA............................................................................................................ 25 1 1 2.00 2 2 0
.....................................................................TGGCAGGGTCTTAGCTGGTTGT............................................................................................................... 22 1 1 2.00 2 2 0
....................................................................TTGGCAGTGTCTTAGCTGGTTGAT.............................................................................................................. 24 1 1 2.00 2 2 0
.....................................................................TGGCAGTGTCTTAGCTGGTTGTC.............................................................................................................. 23 1 1 2.00 2 2 0
......................................................................GGCAGGGTCTTAGCTGGTTGT............................................................................................................... 21 1 1 2.00 2 2 0
.....................................................................TGGCAGTGTCTTAGCTGGTTGA............................................................................................................... 22 1 2 1.50 3 3 0
....................................................................TTGGCAGTGTCTTAGCTGGGTG................................................................................................................ 22 1 1 1.00 1 0 1
.....................................................................TGTCAGTGTCTTAGCTGGTTGT............................................................................................................... 22 1 1 1.00 1 1 0
.....................................................................TGGCAGTGTCTTAGCTGGGTGT............................................................................................................... 22 1 1 1.00 1 0 1
......................................................................GGCAGGGTCTTAGCTGGTTGTT.............................................................................................................. 22 1 1 1.00 1 1 0
......................................................................GGCAGTGTCTTAGCTGCTTGTT.............................................................................................................. 22 1 1 1.00 1 1 0
.....................................................................TGGCAGTGTCTTAGCTGGTTGTGT............................................................................................................. 24 2 1 1.00 1 1 0
.......................................................................GCAGTGTCTTAGCTGGT.................................................................................................................. 17 0 2 1.00 2 2 0
..................................................................GAATGGCAGTGTCTTAGCTGGTTGTT.............................................................................................................. 26 3 1 1.00 1 0 1
.....................................................................TGGCAGTGTCTTAGCTGGTTGTG.............................................................................................................. 23 1 1 1.00 1 1 0
....................................................................ATGGCAGTGTCTTAGCTGGTTGT............................................................................................................... 23 1 1 1.00 1 0 1
.....................................................................TGGCAGTGTCTTAGTTGGTTGT............................................................................................................... 22 1 1 1.00 1 1 0
....................................................................ATGGCAGTGTCTTAGCTGGTTG................................................................................................................ 22 1 1 1.00 1 0 1
.....................................................................TGGCAGAGTCTTAGCTGGTTGTT.............................................................................................................. 23 1 1 1.00 1 1 0
................................................................................................................CAATCAGCAAGTATACTGCCC..................................................................... 21 0 1 1.00 1 1 0
.....................................................................AGGCAGTGTCTTAGCTGGTTGTT.............................................................................................................. 23 1 1 1.00 1 1 0
.....................................................................TGGCAGTGTCTTAGCTGGCTGTT.............................................................................................................. 23 1 1 1.00 1 1 0
.....................................................................TTGCAGTGTCTTAGCTGGTTGT............................................................................................................... 22 1 1 1.00 1 1 0
.....................................................................TGGCAGTGTCTTAGCTGGTTGC............................................................................................................... 22 1 1 1.00 1 1 0
....................................................................ATGGCAGTGTCTTAGCTGGTTGTTA............................................................................................................. 25 2 1 1.00 1 0 1
.....................................................................TGGCAGGGTCTTAGCTGGTTGTT.............................................................................................................. 23 1 1 1.00 1 1 0
......................................................................GGCAGTGTCTTAGCTGGTTGTAT............................................................................................................. 23 2 2 1.00 2 2 0
........................................................................CAGTGTCTTAGCTGGTTGTT.............................................................................................................. 20 0 1 1.00 1 1 0
.....................................................................TGGCCGTGTCTTAGCTGGTTGT............................................................................................................... 22 1 1 1.00 1 1 0
.....................................................................TGGCAGTGTCTTAGCTGGTTGTTGTGAG......................................................................................................... 28 0 1 1.00 1 1 0
.....................................................................TGGCCGTGTCTTAGCTGGTTGTT.............................................................................................................. 23 1 1 1.00 1 1 0
......................................................................GGCAGTGTCTTAGCGGGTTGT............................................................................................................... 21 1 1 1.00 1 1 0
......................................................................GGCAGTGTCTTAGCTGGGTGTT.............................................................................................................. 22 1 1 1.00 1 1 0
.....................................................................TGGCAGTGTCTTAGCTGGTTGCT.............................................................................................................. 23 1 1 1.00 1 1 0
.....................................................................TGGCAGTGTCTTAGCTGGTTGTTGTGAGT........................................................................................................ 29 0 1 1.00 1 1 0
................................................................................................................CAATCAGCAAGTATACTGCCCTA................................................................... 23 0 1 1.00 1 1 0
.......................................................................GCAGTGTCTTAGCTGGTTGTTT............................................................................................................. 22 1 1 1.00 1 1 0
..................................................................................................................ATCAGCAAGTATACTGCCCT.................................................................... 20 0 1 1.00 1 0 1
.....................................................................TGGCAGCGTCTTAGCTGGTTGT............................................................................................................... 22 1 1 1.00 1 0 1
.....................................................................TGGCAGTGTCTTAGCTGCTTGTT.............................................................................................................. 23 1 1 1.00 1 1 0
.....................................................................TGGCAGAGTCTTAGCTGGTTGT............................................................................................................... 22 1 1 1.00 1 1 0
.....................................................................TGGCCGGGTCTTAGCTGGTTGT............................................................................................................... 22 2 1 1.00 1 1 0
.....................................................................TGGCAATGTCTTAGCTGGTTGT............................................................................................................... 22 1 1 1.00 1 1 0
......................................................................GGCAGTGCCTTAGCTGGTTGTT.............................................................................................................. 22 1 1 1.00 1 1 0
...............................................................................................................ACAATCAGCAAGTATACTGCCC..................................................................... 22 1 1 1.00 1 0 1
..........................................................................GTGTCTTAGCTGGTTGTT.............................................................................................................. 18 0 1 1.00 1 1 0
.....................................................................TGGCAGTGTCTTAGCTGGTTGCCA............................................................................................................. 24 3 3 0.67 2 2 0
......................................................................GGCAGCGTCTTAGCTGGTTGTTT............................................................................................................. 23 2 2 0.50 1 1 0
...........................................................................TGTCTTAGCTGGTTGT............................................................................................................... 16 0 2 0.50 1 1 0
...................................................................ATTGGCAGTGTCTTAGCTGGTA................................................................................................................. 22 2 2 0.50 1 0 1
.......................................................................GCCGTGTCTTAGCTGGTTGT............................................................................................................... 20 1 2 0.50 1 1 0
............................................................................GTCTTAGCTGGTTGT............................................................................................................... 15 0 5 0.40 2 2 0
.....................................................................TGGCAGTGTCTTAGCTGAT.................................................................................................................. 19 1 3 0.33 1 1 0
.....................................................................TGGCAGTGTCTTAGCTG.................................................................................................................... 17 0 4 0.25 1 1 0
.....................................................................TGGCAGTGTCTTAGCTGA................................................................................................................... 18 1 9 0.22 2 2 0
.........................................................................AGTGTCTTAGCTGGTTGTTTGGC.......................................................................................................... 23 3 5 0.20 1 1 0
.....................................................................TGGCAGTGTGTTAGCTGGT.................................................................................................................. 19 1 6 0.17 1 1 0

Anti-sense strand reads

AAAAATAGTCGTCCAGGGCCCTCTTCGGTGCCTGCGCGCGGTCCCTCCCCGGCCGACACTCACAAAGAAACCGTCACAGAATCGACCAACAACACTCAGTGTCTCTTCCTTCGTTAGTCGTTCATATGACGGGATCTTCACGACGTGCAACACCCCGGGTCCTGCGTCCCTCCGCCGCTCTCTGCAGACCTGTAGCACCCGG
*****************************************************.(((((((((((((..(((((((((((.((((((((((.....((.....))....))))))))))))).))))))))..))))))))).)))).****************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:33 AM