ID:

ocu-mir-328

 Coordinate:

chr5:22813797-22813891 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-48.4 -48.2 -47.9

Sense Strand Reads

CTCATGGAAGCTCTGGTCCTGGCCGAAGAACATGGGCGAGAAGTCCTGGGCTGTCTCAGAACCTGGAGCGGGGGGGCAGGAGGGGCTCAGGGAGAAAAGTGTGCAGCCCCTGGCCCTCTCTGCCCTTCCGTCCCTGTTTCCAGACTCACTGTGCCCAGTCCCACTCACAAGGCTCCCCAACACGGAGCAGCTCGC
********************************************************..((((..((.(((((((((((((.(((((.(((((...............)))))))))).))))))))))))).)).)))).......************************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
.............................................................................................................CTGGCCCTCTCTGCCCTTCCGT................................................................ 22 0 1 18.00 18 17 1
.............................................................................................................CTGGCCCTCTCTGCCCTTCCGTT............................................................... 23 1 1 14.00 14 7 7
.............................................................................................................CTGGCCCTCTCTGCCCTT.................................................................... 18 0 1 2.00 2 2 0
............................................................................................................ACTGGCCCTCTCTGCCCTTCCG................................................................. 22 1 1 2.00 2 2 0
.............................................................................................................CTGGCCCTCTCTGCCCTTCCGA................................................................ 22 1 1 2.00 2 0 2
.............................................................................................................CTGGCCCTCTCTGCCCTTCCGTTT.............................................................. 24 2 1 2.00 2 1 1
..............................................................................................................TGGCCCTCTCTGCCCTTCCGT................................................................ 21 0 1 2.00 2 2 0
.............................................................................................................CTGGCCCTCTCTGCCCTTCCGTA............................................................... 23 1 1 1.00 1 1 0
.............................................................................................................CTGGCCCTGTCTGCCCTTCCGTT............................................................... 23 2 1 1.00 1 1 0
............................................................................................................CCTGGCCCTCTCTGCCCTTCCGT................................................................ 23 0 1 1.00 1 1 0
.......................................................................GGGGGCAGGAGGGGCTCAGGG....................................................................................................... 21 0 1 1.00 1 1 0
.............................................................................................................CTGGCCCTCTCTGCCCTTCCGCT............................................................... 23 2 1 1.00 1 0 1
.............................................................................................................CTGGCCCTCTCTGCCCTTCCGAT............................................................... 23 2 2 1.00 2 2 0
.............................................................................................................CTGGCCCCCTCTGCCCTTCCGT................................................................ 22 1 1 1.00 1 1 0
.............................................................................................................CTGGCCCTCTCTGCCCTTCCGATT.............................................................. 24 3 5 0.40 2 2 0
.............................................................................................................CTGGCCCTCTCTGCCCTTCCGTTTT............................................................. 25 3 3 0.33 1 0 1
.............................................................................................................CTGGCCCTCTCTGCCCTTCCGGTT.............................................................. 24 3 3 0.33 1 1 0

Anti-sense strand reads

GAGTACCTTCGAGACCAGGACCGGCTTCTTGTACCCGCTCTTCAGGACCCGACAGAGTCTTGGACCTCGCCCCCCCGTCCTCCCCGAGTCCCTCTTTTCACACGTCGGGGACCGGGAGAGACGGGAAGGCAGGGACAAAGGTCTGAGTGACACGGGTCAGGGTGAGTGTTCCGAGGGGTTGTGCCTCGTCGAGCG
*************************************************..((((..((.(((((((((((((.(((((.(((((...............)))))))))).))))))))))))).)).)))).......******************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:46 AM