ID:

ocu-mir-324

 Coordinate:

chr19:11916568-11916656 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.7

Sense Strand Reads

CCTGGGACGCACCTCCGCAGAACAGCACTGCTCTCCCCCTGCAGAAGCTGAGCTGGCTGTGCCTCCCCGCATCCCCTAGGGCATTGGTGTAAAGCTGGAGACCCACTGCCCCAGGTGCTGCTGGGGGTCGTAGTCTGACCCACTGGAAGAAAGCCACAAGGCCTCCAGGGAGAGGGGCGTGGGGGCCCT
****************************************************..(((((((.(((((.(((...(((.(((((.(((.((..........))))).))))).)))...))).))))).)))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
........................................................................................................ACTGCCCCAGGTGCTGCTGGT................................................................ 21 1 2 58.50 117 117 0
...................................................................CGCATCCCCTAGGGCATTGGT..................................................................................................... 21 0 1 45.00 45 44 1
...................................................................CGCATCCCCTAGGGCATTGGTGT................................................................................................... 23 0 1 41.00 41 38 3
...................................................................CGCATCCCCTAGGGCATTGGTG.................................................................................................... 22 0 1 11.00 11 11 0
......................................................................................................CCACTGCCCCAGGTGCTGCTGGT................................................................ 23 1 1 11.00 11 11 0
......................................................................................................CCACTGCCCCAGGTGCTGCTGGAT............................................................... 24 2 1 8.00 8 8 0
......................................................................................................CCACTGCCCCAGGTGCTGCTGG................................................................. 22 0 1 6.00 6 6 0
...................................................................CGCATCCCCTAGGGCATTGGTGTAT................................................................................................. 25 1 1 5.00 5 5 0
...................................................................CGCATCCCCTAGGGCATTGG...................................................................................................... 20 0 1 5.00 5 4 1
....................................................................GCATCCCCTAGGGCATTGGTG.................................................................................................... 21 0 1 4.00 4 4 0
...................................................................CGCATCCCCTAGGGCATTGGTGAT.................................................................................................. 24 2 1 4.00 4 4 0
......................................................................................................CCACTGCCCCAGGTGCTGCTGT................................................................. 22 1 1 3.00 3 3 0
....................................................................GCATCCCCTAGGGCATTGGT..................................................................................................... 20 0 1 3.00 3 3 0
.........................................................................CCCTAGGGCATTGGTGT................................................................................................... 17 0 1 3.00 3 3 0
...................................................................CGCATCCCCTAGGGCATTG....................................................................................................... 19 0 1 2.00 2 2 0
........................................................................................................ACTGCCCCAGGTGCTGCTG.................................................................. 19 0 1 2.00 2 2 0
..................................................................ACGCATCCCCTAGGGCATTGGTGT................................................................................................... 24 1 1 2.00 2 0 2
...................................................................CGCATCCCCTAGGGCATTGGTGTT.................................................................................................. 24 1 1 2.00 2 2 0
........................................................................................................ACTGCCCCAGGTGCTGCTGGG................................................................ 21 0 1 2.00 2 2 0
......................................................................ATCCCCTAGGGCATTGGT..................................................................................................... 18 0 1 2.00 2 2 0
......................................................................................................CCACTGCCCCAGGTGCTGCTG.................................................................. 21 0 1 2.00 2 2 0
........................................................................................................ACTGCCCCAGGTGCTGCTGGTA............................................................... 22 2 2 1.50 3 3 0
......................................................................ATCCCCTAGGGCATTGGTGT................................................................................................... 20 0 1 1.00 1 1 0
.................................................GAGCTGGCTGTGCCTCCC.......................................................................................................................... 18 0 1 1.00 1 1 0
........................................................................................................ACTGCCCCAGGTGCTGCTGGAT............................................................... 22 2 4 1.00 4 4 0
......................................................................................................CCACTGCCCCAGGTGCTGCTGAT................................................................ 23 2 2 1.00 2 2 0
...................................................................CGCATCCCCTCGGGCATTGGT..................................................................................................... 21 1 1 1.00 1 1 0
......................................................................................................CCACTGCCCCAGGTGCTGCTTGT................................................................ 23 2 1 1.00 1 1 0
........................................................................................................ACTGCCCCAGGTGCTGCTGGGT............................................................... 22 1 1 1.00 1 1 0
........................................................................................................ACTGCCCCAGGTGCTGCT................................................................... 18 0 1 1.00 1 1 0
...................................................................CGCAGCCCCTAGGGCATTGG...................................................................................................... 20 1 1 1.00 1 1 0
.................................................................GTCGCATCCCCTAGGGCATTGGT..................................................................................................... 23 2 1 1.00 1 1 0
...................................................................CGCATCCACTAGGGCATTGGT..................................................................................................... 21 1 1 1.00 1 1 0
...................................................................CGCATCCCCTAGGGCATTGGTGAA.................................................................................................. 24 1 1 1.00 1 1 0
........................................................................................................ACTGCCCCAGGTGCTGCTGGTAA.............................................................. 23 3 12 0.67 8 8 0
........................................................................................................ACTGCCCCAGGTGCTGCTGGGTTT............................................................. 24 2 2 0.50 1 1 0
........................................................................................................ACTGCCCTAGGTGCTGCTGGT................................................................ 21 2 5 0.40 2 2 0
........................................................................................................ACTGCCCCAGGTGCTGCTTGT................................................................ 21 2 8 0.38 3 3 0
........................................................................................................ACTGCCCCAGGTGCTGCTGGTAAT............................................................. 24 3 3 0.33 1 1 0
........................................................................................................ACTGCCCCAGGTGCTGCTGGC................................................................ 21 1 4 0.25 1 1 0
........................................................................................................ACTGCCCCAGGTGCTGCTGAT................................................................ 21 2 12 0.25 3 3 0
........................................................................................................ACTGCCCGAGGTGCTGCTGGT................................................................ 21 2 7 0.14 1 1 0
........................................................................................................ACCGCCCCAGGTGCTGCTGGT................................................................ 21 2 7 0.14 1 1 0
........................................................................................................ACTGCCCCAGGTGCTGCTGGTC............................................................... 22 2 7 0.14 1 1 0
........................................................................................................ACTGCCCCAGGTGCTGCTGGCAAT............................................................. 24 3 10 0.10 1 1 0
........................................................................................................ACGGCCCCAGGTGCTGCTGGT................................................................ 21 2 10 0.10 1 1 0

Anti-sense strand reads

GGACCCTGCGTGGAGGCGTCTTGTCGTGACGAGAGGGGGACGTCTTCGACTCGACCGACACGGAGGGGCGTAGGGGATCCCGTAACCACATTTCGACCTCTGGGTGACGGGGTCCACGACGACCCCCAGCATCAGACTGGGTGACCTTCTTTCGGTGTTCCGGAGGTCCCTCTCCCCGCACCCCCGGGA
**************************************************..(((((((.(((((.(((...(((.(((((.(((.((..........))))).))))).)))...))).))))).)))))))....**************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:38 AM