ID:

ocu-mir-31

 Coordinate:

chr1:32241987-32242092 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.6 -40.6 -40.4

Sense Strand Reads

AGGTGCAAGGGAAGATTGTGGAGAAGTAAAGCTCTGAAGAGACCTAGAATTGCTCCTTTAACTTGGATCTGGAGAGGAGGCAAGATGCTGGCATAGCTGTTGAACTGAGAACCTGCTATGCCAACATATTGCCATCTTTCCTGTCTGACAGCGTCCATGCCATCTGTATACCATTCCTCCATGTGTTACTATGGATGTGTGCCCTT
**************************************************************((((((..(((((((.(((((.(((.(((((((((.(((........)))..))))))))).))).))))).))))))).))))))..******************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
.............................................................................AGGCAAGATGCTGGCATAGCT............................................................................................................ 21 0 1 196.00 196 164 32
.............................................................................AGGCAAGATGCTGGCATAGCTGT.......................................................................................................... 23 0 1 138.00 138 126 12
.............................................................................AGGCAAGATGCTGGCATAGCTG........................................................................................................... 22 0 1 81.00 81 75 6
.............................................................................AGGCAAGATGCTGGCATAGC............................................................................................................. 20 0 1 72.00 72 69 3
.............................................................................AGGCAAGATGCTGGCATAGCTGA.......................................................................................................... 23 1 1 65.00 65 65 0
.................................................................................................................TGCTATGCCAACATATTGCCAT....................................................................... 22 0 1 18.00 18 18 0
.............................................................................AGGCAAGATGCTGGCATAG.............................................................................................................. 19 0 1 18.00 18 17 1
.................................................................................................................TGCTATGCCAACATATTGCCATC...................................................................... 23 0 1 6.00 6 6 0
.................................................................................................................TGCTATGCCAACATATTGCCA........................................................................ 21 0 1 6.00 6 6 0
............................................................................AAGGCAAGATGCTGGCATAGCT............................................................................................................ 22 1 1 5.00 5 4 1
..............................................................................GGCAAGATGCTGGCATAGCT............................................................................................................ 20 0 1 5.00 5 4 1
..................................................................................................................GCTATGCCAACATATTGCCAT....................................................................... 21 0 1 5.00 5 5 0
.................................................................................................................TGCTATGCCAACATATTGCC......................................................................... 20 0 1 4.00 4 4 0
.............................................................................AGGCAAGATGCTGGCATAGCTGTT......................................................................................................... 24 0 1 4.00 4 0 4
.............................................................................AGGCAAGATGCTGGCATAGCTGC.......................................................................................................... 23 1 1 4.00 4 4 0
.............................................................................AGGCAAGATGCTGGCATAGCTT........................................................................................................... 22 1 1 3.00 3 3 0
..............................................................................GGCAAGATGCTGGCATAGCTGTT......................................................................................................... 23 0 1 3.00 3 3 0
.............................................................................AGGCAAGATGCTGGCATAGCTGAT......................................................................................................... 24 1 1 3.00 3 3 0
.............................................................................AGGCAAGATGCTGGCATAGCTGTA......................................................................................................... 24 1 1 3.00 3 0 3
.................................................................................................................TGCTATGCCAACATATTGC.......................................................................... 19 0 1 2.00 2 2 0
.............................................................................AGGCAAGATGCTGGCATAGCTTT.......................................................................................................... 23 1 1 2.00 2 2 0
.................................................................................AAGATGCTGGCATAGCTG........................................................................................................... 18 0 1 2.00 2 2 0
............................................................................AAGGCAAGATGCTGGCATAGCTG........................................................................................................... 23 1 1 2.00 2 2 0
................................................................................CAAGATGCTGGCATAGCT............................................................................................................ 18 0 1 2.00 2 2 0
.............................................................................AGGCACGATGCTGGCATAGCTGT.......................................................................................................... 23 1 1 2.00 2 2 0
.............................................................................AGGCAAGATGCTGGCATAGCTAA.......................................................................................................... 23 2 3 1.67 5 5 0
.............................................................................AGGCAAGATGCTGGCATATCTGT.......................................................................................................... 23 1 1 1.00 1 1 0
.............................................................................AGGCAAGTTGCTGGCATAGCTGT.......................................................................................................... 23 1 1 1.00 1 1 0
.............................................................................AGGCAAGATGCTAGCATAGCT............................................................................................................ 21 1 1 1.00 1 1 0
.............................................................................AGGCAAGATGCTGGCATAGCTGTAG........................................................................................................ 25 1 1 1.00 1 1 0
..............................................................................GGCAAGATGCTGGCATAGCTG........................................................................................................... 21 0 1 1.00 1 0 1
.............................................................................AGGCAAGATGCTGGTATAGCT............................................................................................................ 21 1 1 1.00 1 1 0
.............................................................................AGGCAAGATGCTGGCATAGCTAT.......................................................................................................... 23 1 1 1.00 1 1 0
.............................................................................AGGCAAGATGCTGGCATAGCTGTTT........................................................................................................ 25 1 1 1.00 1 0 1
..............................................................................GGCAAGATGCTGGCATAGCTTT.......................................................................................................... 22 1 1 1.00 1 0 1
.............................................................................AGGCAAGATGCTGGCATAGCTA........................................................................................................... 22 1 1 1.00 1 0 1
.............................................................................AGGCAAGATGCTGGCATA............................................................................................................... 18 0 1 1.00 1 1 0
.............................................................................AGGCAAGATGCTGGCATAGCTTTA......................................................................................................... 24 2 1 1.00 1 0 1
.............................................................................AGGCAAGATGCTGGCATAGCTGAA......................................................................................................... 24 2 1 1.00 1 1 0
.............................................................................AGGCAAGATGCCGGCATAGCTGA.......................................................................................................... 23 2 1 1.00 1 1 0
.............................................................................AGGCAAGCTGCTGGCATAGCT............................................................................................................ 21 1 1 1.00 1 1 0
..............................................................................GGCAAGATGCTGGCATAGCTGA.......................................................................................................... 22 1 1 1.00 1 1 0
.............................................................................AGGCAAGATGCTGGCATCGCTGT.......................................................................................................... 23 1 1 1.00 1 1 0
.............................................................................AGGCCAGATGCTGGCATAGCT............................................................................................................ 21 1 1 1.00 1 0 1
.............................................................................AGGCAAGATGCTGGCATAGCTGTAA........................................................................................................ 25 2 1 1.00 1 0 1
.............................................................................AGGCAAGATGCTGGCATAGA............................................................................................................. 20 1 2 0.50 1 1 0
.................................................................................................................TGCTATGCCAACATATT............................................................................ 17 0 2 0.50 1 1 0
.................................................................................................................TGCTATGCCAACATATTGCCATTAA.................................................................... 25 3 2 0.50 1 0 1
.............................................................................AGGCAAGATGCTGGCATAGCAA........................................................................................................... 22 2 11 0.18 2 2 0
...................................................................................GATGCTGGCATAGCT............................................................................................................ 15 0 12 0.08 1 1 0

Anti-sense strand reads

TCCACGTTCCCTTCTAACACCTCTTCATTTCGAGACTTCTCTGGATCTTAACGAGGAAATTGAACCTAGACCTCTCCTCCGTTCTACGACCGTATCGACAACTTGACTCTTGGACGATACGGTTGTATAACGGTAGAAAGGACAGACTGTCGCAGGTACGGTAGACATATGGTAAGGAGGTACACAATGATACCTACACACGGGAA
********************************************************((((((..(((((((.(((((.(((.(((((((((.(((........)))..))))))))).))).))))).))))))).))))))..************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:26 AM