ID:ocu-mir-30f |
Coordinate:chr13:125818437-125818528 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
GGGGCACAAACCTGCCATGATTCAGGGCGATGAGCAGCCGGGGACGACCGTGGCAGCCTGCCGCTGTAAACATCCGACTGAAAGCTCCTCTTAACACCTTACAGCTTCCAGTCAAGGATGTTTACAGCAGCAAAGACTGCCCAGGGAGAGCGGAGCTGCAGTGAGGCGCACGGTGCTCCGGTTAAGACATCA
***********************************..(((.......((..(((((.((((.((((((((((((((((((.(((((................))))).)))))..))))))))))))).))..)).)))))..)).....)))....*********************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total |
|---|
|
CCCCGTGTTTGGACGGTACTAAGTCCCGCTACTCGTCGGCCCCTGCTGGCACCGTCGGACGGCGACATTTGTAGGCTGACTTTCGAGGAGAATTGTGGAATGTCGAAGGTCAGTTCCTACAAATGTCGTCGTTTCTGACGGGTCCCTCTCGCCTCGACGTCACTCCGCGTGCCACGAGGCCAATTCTGTAGT
***********************************..(((.......((..(((((.((((.((((((((((((((((((.(((((................))))).)))))..))))))))))))).))..)).)))))..)).....)))....*********************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | GSM1528820 Adult_testes |
GSM1528821 Adult_testes_Mili_IP |
|---|---|---|---|---|---|---|---|
| ........................................................................................................GAAGGTCAGTTCCTACAAATGT.................................................................. | 22 | 0 | 1 | 238.00 | 238 | 138 | 100 |
| ..............................................................TGACATTTGTAGGCTGACTTTC............................................................................................................ | 22 | 1 | 1 | 52.00 | 52 | 49 | 3 |
| .......................................................................................................CGAAGGTCAGTTCCTACAAATGT.................................................................. | 23 | 0 | 1 | 44.00 | 44 | 24 | 20 |
| .........................................................................................................AAGGTCAGTTCCTACAAATGT.................................................................. | 21 | 0 | 1 | 43.00 | 43 | 23 | 20 |
| ......................................................................................................TCGAAGGTCAGTTCCTACAAATGT.................................................................. | 24 | 0 | 1 | 36.00 | 36 | 21 | 15 |
| ................................................................ACATTTGTAGGCTGACTTTC............................................................................................................ | 20 | 0 | 1 | 26.00 | 26 | 8 | 18 |
| ..........................................................................................................AGGTCAGTTCCTACAAATGT.................................................................. | 20 | 0 | 1 | 26.00 | 26 | 20 | 6 |
| ......................................................................................................TCGAAGGTCAGTTCCTA......................................................................... | 17 | 0 | 2 | 24.50 | 49 | 49 | 0 |
| ........................................................................................................GAAGGTCAGTTCCTACAAATGTA................................................................. | 23 | 1 | 1 | 17.00 | 17 | 3 | 14 |
| ......................................................................................................TCGAAGGTCAGTTCCTAC........................................................................ | 18 | 0 | 2 | 13.00 | 26 | 26 | 0 |
| ........................................................................................................GAAGGTCAGTTCCTACAAATG................................................................... | 21 | 0 | 1 | 12.00 | 12 | 7 | 5 |
| ...............................................................GACATTTGTAGGCTGACTTTC............................................................................................................ | 21 | 0 | 1 | 12.00 | 12 | 6 | 6 |
| ..............................................................CGACATTTGTAGGCTGACTTTC............................................................................................................ | 22 | 0 | 1 | 11.00 | 11 | 10 | 1 |
| .....................................................................................................TTCGAAGGTCAGTTCCTACAAATGT.................................................................. | 25 | 1 | 1 | 10.00 | 10 | 4 | 6 |
| .................................................................CATTTGTAGGCTGACTTTC............................................................................................................ | 19 | 0 | 1 | 7.00 | 7 | 2 | 5 |
| .......................................................................................................CGAAGGTCAGTTCCTACAAATG................................................................... | 22 | 0 | 1 | 7.00 | 7 | 0 | 7 |
| ................................................................ACATTTGTAGGCTGACTTTCT........................................................................................................... | 21 | 1 | 1 | 7.00 | 7 | 7 | 0 |
| ....................................................................................................TTTCGAAGGTCAGTTCCTACAAATGT.................................................................. | 26 | 1 | 1 | 6.00 | 6 | 2 | 4 |
| ...........................................................................................................GGTCAGTTCCTACAAATGT.................................................................. | 19 | 0 | 1 | 6.00 | 6 | 3 | 3 |
| ............................................................................................................GTCAGTTCCTACAAATGT.................................................................. | 18 | 0 | 1 | 4.00 | 4 | 3 | 1 |
| ....................................................................................................AATCGAAGGTCAGTTCCTACAAATGT.................................................................. | 26 | 2 | 1 | 4.00 | 4 | 2 | 2 |
| ...................................................................................................TTTTCGAAGGTCAGTTCCTACAAATGT.................................................................. | 27 | 2 | 1 | 4.00 | 4 | 2 | 2 |
| .......................................................................................................CGAAGGTCAGTTCCTACAAATGTA................................................................. | 24 | 1 | 1 | 4.00 | 4 | 0 | 4 |
| .........................................................................................................AAGGTCAGTTCCTACAAATGTA................................................................. | 22 | 1 | 1 | 4.00 | 4 | 0 | 4 |
| .........................................................................................................AAGATCAGTTCCTACAAATGT.................................................................. | 21 | 1 | 1 | 3.00 | 3 | 3 | 0 |
| ................................................................ACATTTGTAGGCTGACTTTCA........................................................................................................... | 21 | 1 | 1 | 3.00 | 3 | 0 | 3 |
| .............................................................ATGACATTTGTAGGCTGACTTTC............................................................................................................ | 23 | 2 | 1 | 3.00 | 3 | 0 | 3 |
| ......................................................................................................TCGAAGGTCAGTTCCTACAAATG................................................................... | 23 | 0 | 1 | 3.00 | 3 | 1 | 2 |
| ........................................................................................................GAAGGTCAGTTCCTACAAA..................................................................... | 19 | 0 | 1 | 3.00 | 3 | 0 | 3 |
| ..........................................................................................................AGGTCAGTTCCTACAAATGTA................................................................. | 21 | 1 | 1 | 3.00 | 3 | 2 | 1 |
| .....................................................................................................ATCGAAGGTCAGTTCCTACAAATGT.................................................................. | 25 | 1 | 1 | 3.00 | 3 | 0 | 3 |
| ..................................................................ATTTGTAGGCTGACTTTC............................................................................................................ | 18 | 0 | 1 | 3.00 | 3 | 0 | 3 |
| ........................................................................................................GAAGGTCAGTTCCTAC........................................................................ | 16 | 0 | 2 | 2.50 | 5 | 4 | 1 |
| ..................................................................................................AATGTAGAAGGTCAGTTCCTA......................................................................... | 21 | 1 | 1 | 2.00 | 2 | 2 | 0 |
| ..........................................................................................................AGGTCAGTTCCTACAAATGTACTAG............................................................. | 25 | 3 | 1 | 2.00 | 2 | 0 | 2 |
| ........................................................................................................GAAGGTCAGTTCCTACAA...................................................................... | 18 | 0 | 1 | 2.00 | 2 | 0 | 2 |
| ..............................................................AGACATTTGTAGGCTGACTTT............................................................................................................. | 21 | 1 | 1 | 2.00 | 2 | 2 | 0 |
| ........................................................................................................GAAGGTCAGTTCCTACAAACGT.................................................................. | 22 | 1 | 1 | 2.00 | 2 | 1 | 1 |
| ......................................................................................................ACGAAGGTCAGTTCCTACAAATG................................................................... | 23 | 1 | 1 | 2.00 | 2 | 1 | 1 |
| ..............................................................TGACATTTGTAGGCTGACTTTCAA.......................................................................................................... | 24 | 2 | 1 | 2.00 | 2 | 2 | 0 |
| ....................................................................................................TTTCGAAGGTCAGTTCCTACAAATG................................................................... | 25 | 1 | 1 | 2.00 | 2 | 2 | 0 |
| ......................................................................................................TCGAAGGTCAGTTCCTACAAATGTA................................................................. | 25 | 1 | 1 | 2.00 | 2 | 0 | 2 |
| ......................................................................................................TCGAAGGTCAGTTCCTACAAAT.................................................................... | 22 | 0 | 1 | 2.00 | 2 | 1 | 1 |
| ..............................................................TGACATTTGTAGGCTGACTTTCA........................................................................................................... | 23 | 2 | 1 | 2.00 | 2 | 2 | 0 |
| .....................................................................................................TCCGAAGGTCAGTTCCTACAAATGT.................................................................. | 25 | 2 | 1 | 2.00 | 2 | 1 | 1 |
| ....................................................................................................TATCGAAGGTCAGTTCCTACAAATGT.................................................................. | 26 | 1 | 1 | 2.00 | 2 | 0 | 2 |
| ..............................................................CGACATTTGTAGGCTGAC................................................................................................................ | 18 | 0 | 1 | 2.00 | 2 | 2 | 0 |
| ....................................................................................................ATTCGAAGGTCAGTTCCTACAAATGT.................................................................. | 26 | 2 | 1 | 2.00 | 2 | 1 | 1 |
| .....................................................................................................TTCGAAGGTCAGTTCCTACAAATG................................................................... | 24 | 1 | 1 | 2.00 | 2 | 0 | 2 |
| .............................................................TTGACATTTGTAGGCTGACTTTC............................................................................................................ | 23 | 2 | 2 | 1.50 | 3 | 3 | 0 |
| ...................................................................TTTGTAGGCTGACTTTC............................................................................................................ | 17 | 0 | 2 | 1.50 | 3 | 1 | 2 |
| .....................................................................................................TTCGAAGGTCAGTTCCTAC........................................................................ | 19 | 1 | 4 | 1.50 | 6 | 6 | 0 |
| .......................................................................................................TGAAGGTCAGTTCCTACAAATGT.................................................................. | 23 | 1 | 1 | 1.00 | 1 | 0 | 1 |
| ..............................................................AGACATTTGTAGGCTGACTTTCA........................................................................................................... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 |
| ....................................................................................................AATCGAAGGTCAGTTCCTACAAATGTA................................................................. | 27 | 3 | 1 | 1.00 | 1 | 0 | 1 |
| ..............................................................TGACATTTGTAGGCTGAC................................................................................................................ | 18 | 1 | 1 | 1.00 | 1 | 1 | 0 |
| .....................................................................................................GTCGAAGGTCAGTTCCTACA....................................................................... | 20 | 0 | 1 | 1.00 | 1 | 0 | 1 |
| ....................................................................................................AGTCGAAGGTCAGTTCCTACAAAT.................................................................... | 24 | 1 | 1 | 1.00 | 1 | 0 | 1 |
| .................................................................................................CAATGTCGAAGGTCAGTTCCTACA....................................................................... | 24 | 1 | 1 | 1.00 | 1 | 1 | 0 |
| .......................................................................................................CGAAGGTCAGTTCCTAC........................................................................ | 17 | 0 | 2 | 1.00 | 2 | 1 | 1 |
| ......................................................................................................TCGAAGGTCAGTTCCT.......................................................................... | 16 | 0 | 3 | 1.00 | 3 | 3 | 0 |
| ........................................................................................................GAAGGTCAGTTCCTACAAATTT.................................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 |
| ..............................................................CGCCATTTGTAGGCTGACTTTC............................................................................................................ | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 |
| .........................................................................................................AAGGTCAGTTCCCACAAATGT.................................................................. | 21 | 1 | 1 | 1.00 | 1 | 0 | 1 |
| ...............................................................GACATTTGTAGGCTGACTTTCAA.......................................................................................................... | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 |
| .......................................................................................................AAAAGGTCAGTTCCTACAAATGT.................................................................. | 23 | 2 | 1 | 1.00 | 1 | 0 | 1 |
| ........................................................................................................GAAGGTCAGTTCCTACAAAGGT.................................................................. | 22 | 1 | 1 | 1.00 | 1 | 0 | 1 |
| .....................................................................................................TTCGAAGGTCAGTTCCTACAAATGTA................................................................. | 26 | 2 | 1 | 1.00 | 1 | 0 | 1 |
| ....................................................................................................TGTCGAAGGTCAGTTCCTAC........................................................................ | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 |
| ........................................................................................................GAAGGTCAGTTCCTACAGATGT.................................................................. | 22 | 1 | 1 | 1.00 | 1 | 0 | 1 |
| ....................................................................................................AAACGAAGGTCAGTTCCTACAAATGT.................................................................. | 26 | 3 | 2 | 1.00 | 2 | 0 | 2 |
| ....................................................................................................ATTCGAAGGTCAGTTCCTACAAACGT.................................................................. | 26 | 3 | 1 | 1.00 | 1 | 0 | 1 |
| .......................................................................................................CGAAGGTCAGTTCCTACAAAT.................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 |
| .....................................................................................................ACAGAAGGTCAGTTCCTACAAATGT.................................................................. | 25 | 3 | 1 | 1.00 | 1 | 0 | 1 |
| ........................................................................................................TAAGGTCAGTTCCTACAAATGT.................................................................. | 22 | 1 | 1 | 1.00 | 1 | 0 | 1 |
| ..........................................................................................................AGGTCAGTTCCTACAAATG................................................................... | 19 | 0 | 1 | 1.00 | 1 | 0 | 1 |
| ......................................................................................................ACGAAGGTCAGTTCCTACAAATGT.................................................................. | 24 | 1 | 1 | 1.00 | 1 | 1 | 0 |
| .....................................................................................................ATCGAAGGTCAGTTCCTACAAA..................................................................... | 22 | 1 | 1 | 1.00 | 1 | 0 | 1 |
| ...............................................................GACATTTGTAGGCGGACTTTC............................................................................................................ | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 |
| ....................................................................................................TATCGAAGGTCAGTTCCTAC........................................................................ | 20 | 1 | 2 | 1.00 | 2 | 2 | 0 |
| ......................................................................................................TCGTAGGTCAGTTCCTACAAATA................................................................... | 23 | 2 | 1 | 1.00 | 1 | 0 | 1 |
| ...............................................................GACATTTGTAGGCTGACTTT............................................................................................................. | 20 | 0 | 1 | 1.00 | 1 | 0 | 1 |
| ........................................................................................................GAAGGTCAGTTCCTACCAATGT.................................................................. | 22 | 1 | 1 | 1.00 | 1 | 0 | 1 |
| .......................................................................................................CGAAGGTCAGTTCCT.......................................................................... | 15 | 0 | 4 | 1.00 | 4 | 4 | 0 |
| ..............................................................AGACATTTGTAGGCTGTCTTTC............................................................................................................ | 22 | 2 | 1 | 1.00 | 1 | 0 | 1 |
| .........................................................................................................AAGGTCAGTTCCTACAA...................................................................... | 17 | 0 | 1 | 1.00 | 1 | 0 | 1 |
| .........................................................................................................AAGGTTAGTTCCTACAAATGTA................................................................. | 22 | 2 | 1 | 1.00 | 1 | 0 | 1 |
| .....................................................................................................TTCGAAGGTCAGTTCCTACAAA..................................................................... | 22 | 1 | 1 | 1.00 | 1 | 0 | 1 |
| ...............................................................GACATTTGTAGGCTGACTT.............................................................................................................. | 19 | 0 | 1 | 1.00 | 1 | 1 | 0 |
| ...........................................................................................................GGTCAGTTCCTACACATGT.................................................................. | 19 | 1 | 1 | 1.00 | 1 | 0 | 1 |
| .......................................................................................................CGAAGGTCAGTTCCTACA....................................................................... | 18 | 0 | 1 | 1.00 | 1 | 1 | 0 |
| .................................................................................................GAAAATCGAAGGTCAGTTCCTACAAATGT.................................................................. | 29 | 2 | 1 | 1.00 | 1 | 0 | 1 |
| .........................................................................................................AAGGTCAGTTCCTACAAATGC.................................................................. | 21 | 1 | 1 | 1.00 | 1 | 0 | 1 |
| .........................................................................................................AAGGTCAGTTCCTACAAAT.................................................................... | 19 | 0 | 1 | 1.00 | 1 | 1 | 0 |
| .....................................................................................................ATCGAAGGTCAGTTCCTACAAATGTA................................................................. | 26 | 2 | 1 | 1.00 | 1 | 0 | 1 |
| ........................................................................................................AAAGGTCAGTTCCTACAAATGT.................................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 |
| ......................................................................................................TCGAAGGTCAGTTCCTACAAATA................................................................... | 23 | 1 | 1 | 1.00 | 1 | 0 | 1 |
| ................................................................................................GAAAGCTCGAAGGTCAGTTCCTACAAATGT.................................................................. | 30 | 3 | 1 | 1.00 | 1 | 0 | 1 |
| ...............................................................AAAATTTGTAGGCTGACTTTC............................................................................................................ | 21 | 2 | 3 | 0.67 | 2 | 2 | 0 |
| ......................................................................................................TCGAAGGTCAGTTCCTACAAATGTAA................................................................ | 26 | 2 | 2 | 0.50 | 1 | 0 | 1 |
| .......................................................................................................CGAAGGTCAGTTCCTA......................................................................... | 16 | 0 | 2 | 0.50 | 1 | 1 | 0 |
| ................................................................ACGTTTGTAGGCTGACTTTCCA.......................................................................................................... | 22 | 2 | 2 | 0.50 | 1 | 0 | 1 |
| ..............................................................TGACATTTGTAGGCTGACTTTG............................................................................................................ | 22 | 2 | 2 | 0.50 | 1 | 1 | 0 |
| ...........................................................................................................GGTCAGTTCCTACAA...................................................................... | 15 | 0 | 2 | 0.50 | 1 | 0 | 1 |
| ........................................................................................................GAAGGTCAGTTCCTA......................................................................... | 15 | 0 | 6 | 0.33 | 2 | 1 | 1 |
| ......................................................................................................AAAAAGGTCAGTTCCTACAAATGT.................................................................. | 24 | 3 | 3 | 0.33 | 1 | 0 | 1 |
| .......................................................................................................TGTAGGTCAGTTCCTACAAA..................................................................... | 20 | 2 | 10 | 0.30 | 3 | 3 | 0 |
| ......................................................................................................TCTAAGGTCAGTTCCTAC........................................................................ | 18 | 1 | 4 | 0.25 | 1 | 1 | 0 |
| ......................................................................................................TCGAAGGTCAGTTCC........................................................................... | 15 | 0 | 7 | 0.14 | 1 | 1 | 0 |
| ......................................................................................................CCGAAGGTCAGTTCCTA......................................................................... | 17 | 1 | 16 | 0.06 | 1 | 1 | 0 |
| ......................................................................................................TCGAAGGTCAGTTGCT.......................................................................... | 16 | 1 | 19 | 0.05 | 1 | 1 | 0 |
| .......................................................................................................TGAAGGTCAGTTCCTAC........................................................................ | 17 | 1 | 20 | 0.05 | 1 | 1 | 0 |
| ................................................................................................CAAATGTCGAAGGTCAGTTCCA.......................................................................... | 22 | 3 | 20 | 0.05 | 1 | 0 | 1 |
Generated: 05/16/2015 at 12:32 AM