ID:

ocu-mir-30e

 Coordinate:

chr13:125818437-125818528 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-57.5

Sense Strand Reads

TGATGTCTTAACCGGAGCACCGTGCGCCTCACTGCAGCTCCGCTCTCCCTGGGCAGTCTTTGCTGCTGTAAACATCCTTGACTGGAAGCTGTAAGGTGTTAAGAGGAGCTTTCAGTCGGATGTTTACAGCGGCAGGCTGCCACGGTCGTCCCCGGCTGCTCATCGCCCTGAATCATGGCAGGTTTGTGCCCC
***************************************************((((((((..((((((((((((((((..(((((((((((................)))))))))))))))))))))))))))))))))))..************************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
..................................................................TGTAAACATCCTTGACTGGAAG........................................................................................................ 22 0 1 238.00 238 138 100
............................................................................................................CTTTCAGTCGGATGTTTACAGT.............................................................. 22 1 1 52.00 52 49 3
..................................................................TGTAAACATCCTTGACTGGAAGC....................................................................................................... 23 0 1 44.00 44 24 20
..................................................................TGTAAACATCCTTGACTGGAA......................................................................................................... 21 0 1 43.00 43 23 20
..................................................................TGTAAACATCCTTGACTGGAAGCT...................................................................................................... 24 0 1 36.00 36 21 15
............................................................................................................CTTTCAGTCGGATGTTTACA................................................................ 20 0 1 26.00 26 8 18
..................................................................TGTAAACATCCTTGACTGGA.......................................................................................................... 20 0 1 26.00 26 20 6
.........................................................................ATCCTTGACTGGAAGCT...................................................................................................... 17 0 2 24.50 49 49 0
.................................................................ATGTAAACATCCTTGACTGGAAG........................................................................................................ 23 1 1 17.00 17 3 14
........................................................................CATCCTTGACTGGAAGCT...................................................................................................... 18 0 2 13.00 26 26 0
...................................................................GTAAACATCCTTGACTGGAAG........................................................................................................ 21 0 1 12.00 12 7 5
............................................................................................................CTTTCAGTCGGATGTTTACAG............................................................... 21 0 1 12.00 12 6 6
............................................................................................................CTTTCAGTCGGATGTTTACAGC.............................................................. 22 0 1 11.00 11 10 1
..................................................................TGTAAACATCCTTGACTGGAAGCTT..................................................................................................... 25 1 1 10.00 10 4 6
............................................................................................................CTTTCAGTCGGATGTTTAC................................................................. 19 0 1 7.00 7 2 5
...................................................................GTAAACATCCTTGACTGGAAGC....................................................................................................... 22 0 1 7.00 7 0 7
...........................................................................................................TCTTTCAGTCGGATGTTTACA................................................................ 21 1 1 7.00 7 7 0
..................................................................TGTAAACATCCTTGACTGGAAGCTTT.................................................................................................... 26 1 1 6.00 6 2 4
..................................................................TGTAAACATCCTTGACTGG........................................................................................................... 19 0 1 6.00 6 3 3
..................................................................TGTAAACATCCTTGACTG............................................................................................................ 18 0 1 4.00 4 3 1
..................................................................TGTAAACATCCTTGACTGGAAGCTAA.................................................................................................... 26 2 1 4.00 4 2 2
..................................................................TGTAAACATCCTTGACTGGAAGCTTTT................................................................................................... 27 2 1 4.00 4 2 2
.................................................................ATGTAAACATCCTTGACTGGAAGC....................................................................................................... 24 1 1 4.00 4 0 4
.................................................................ATGTAAACATCCTTGACTGGAA......................................................................................................... 22 1 1 4.00 4 0 4
..................................................................TGTAAACATCCTTGACTAGAA......................................................................................................... 21 1 1 3.00 3 3 0
...........................................................................................................ACTTTCAGTCGGATGTTTACA................................................................ 21 1 1 3.00 3 0 3
............................................................................................................CTTTCAGTCGGATGTTTACAGTA............................................................. 23 2 1 3.00 3 0 3
...................................................................GTAAACATCCTTGACTGGAAGCT...................................................................................................... 23 0 1 3.00 3 1 2
.....................................................................AAACATCCTTGACTGGAAG........................................................................................................ 19 0 1 3.00 3 0 3
.................................................................ATGTAAACATCCTTGACTGGA.......................................................................................................... 21 1 1 3.00 3 2 1
..................................................................TGTAAACATCCTTGACTGGAAGCTA..................................................................................................... 25 1 1 3.00 3 0 3
............................................................................................................CTTTCAGTCGGATGTTTA.................................................................. 18 0 1 3.00 3 0 3
........................................................................CATCCTTGACTGGAAG........................................................................................................ 16 0 2 2.50 5 4 1
.........................................................................ATCCTTGACTGGAAGATGTAA.................................................................................................. 21 1 1 2.00 2 2 0
.............................................................GATCATGTAAACATCCTTGACTGGA.......................................................................................................... 25 3 1 2.00 2 0 2
......................................................................AACATCCTTGACTGGAAG........................................................................................................ 18 0 1 2.00 2 0 2
.............................................................................................................TTTCAGTCGGATGTTTACAGA.............................................................. 21 1 1 2.00 2 2 0
..................................................................TGCAAACATCCTTGACTGGAAG........................................................................................................ 22 1 1 2.00 2 1 1
...................................................................GTAAACATCCTTGACTGGAAGCA...................................................................................................... 23 1 1 2.00 2 1 1
..........................................................................................................AACTTTCAGTCGGATGTTTACAGT.............................................................. 24 2 1 2.00 2 2 0
...................................................................GTAAACATCCTTGACTGGAAGCTTT.................................................................................................... 25 1 1 2.00 2 2 0
.................................................................ATGTAAACATCCTTGACTGGAAGCT...................................................................................................... 25 1 1 2.00 2 0 2
....................................................................TAAACATCCTTGACTGGAAGCT...................................................................................................... 22 0 1 2.00 2 1 1
...........................................................................................................ACTTTCAGTCGGATGTTTACAGT.............................................................. 23 2 1 2.00 2 2 0
..................................................................TGTAAACATCCTTGACTGGAAGCCT..................................................................................................... 25 2 1 2.00 2 1 1
..................................................................TGTAAACATCCTTGACTGGAAGCTAT.................................................................................................... 26 1 1 2.00 2 0 2
................................................................................................................CAGTCGGATGTTTACAGC.............................................................. 18 0 1 2.00 2 2 0
..................................................................TGTAAACATCCTTGACTGGAAGCTTA.................................................................................................... 26 2 1 2.00 2 1 1
...................................................................GTAAACATCCTTGACTGGAAGCTT..................................................................................................... 24 1 1 2.00 2 0 2
............................................................................................................CTTTCAGTCGGATGTTTACAGTT............................................................. 23 2 2 1.50 3 3 0
............................................................................................................CTTTCAGTCGGATGTTT................................................................... 17 0 2 1.50 3 1 2
........................................................................CATCCTTGACTGGAAGCTT..................................................................................................... 19 1 4 1.50 6 6 0
..................................................................TGTAAACATCCTTGACTGGAAGT....................................................................................................... 23 1 1 1.00 1 0 1
...........................................................................................................ACTTTCAGTCGGATGTTTACAGA.............................................................. 23 2 1 1.00 1 1 0
.................................................................ATGTAAACATCCTTGACTGGAAGCTAA.................................................................................................... 27 3 1 1.00 1 0 1
................................................................................................................CAGTCGGATGTTTACAGT.............................................................. 18 1 1 1.00 1 1 0
.......................................................................ACATCCTTGACTGGAAGCTG..................................................................................................... 20 0 1 1.00 1 0 1
....................................................................TAAACATCCTTGACTGGAAGCTGA.................................................................................................... 24 1 1 1.00 1 0 1
.......................................................................ACATCCTTGACTGGAAGCTGTAAC................................................................................................. 24 1 1 1.00 1 1 0
........................................................................CATCCTTGACTGGAAGC....................................................................................................... 17 0 2 1.00 2 1 1
..........................................................................TCCTTGACTGGAAGCT...................................................................................................... 16 0 3 1.00 3 3 0
..................................................................TTTAAACATCCTTGACTGGAAG........................................................................................................ 22 1 1 1.00 1 1 0
............................................................................................................CTTTCAGTCGGATGTTTACCGC.............................................................. 22 1 1 1.00 1 1 0
..................................................................TGTAAACACCCTTGACTGGAA......................................................................................................... 21 1 1 1.00 1 0 1
..........................................................................................................AACTTTCAGTCGGATGTTTACAG............................................................... 23 1 1 1.00 1 1 0
..................................................................TGTAAACATCCTTGACTGGAAAA....................................................................................................... 23 2 1 1.00 1 0 1
..................................................................TGGAAACATCCTTGACTGGAAG........................................................................................................ 22 1 1 1.00 1 0 1
.................................................................ATGTAAACATCCTTGACTGGAAGCTT..................................................................................................... 26 2 1 1.00 1 0 1
........................................................................CATCCTTGACTGGAAGCTGT.................................................................................................... 20 0 1 1.00 1 1 0
..................................................................TGTAGACATCCTTGACTGGAAG........................................................................................................ 22 1 1 1.00 1 0 1
..................................................................TGTAAACATCCTTGACTGGAAGCAAA.................................................................................................... 26 3 2 1.00 2 0 2
..................................................................TGCAAACATCCTTGACTGGAAGCTTA.................................................................................................... 26 3 1 1.00 1 0 1
....................................................................TAAACATCCTTGACTGGAAGC....................................................................................................... 21 0 1 1.00 1 0 1
..................................................................TGTAAACATCCTTGACTGGAAGACA..................................................................................................... 25 3 1 1.00 1 0 1
..................................................................TGTAAACATCCTTGACTGGAAT........................................................................................................ 22 1 1 1.00 1 0 1
...................................................................GTAAACATCCTTGACTGGA.......................................................................................................... 19 0 1 1.00 1 0 1
..................................................................TGTAAACATCCTTGACTGGAAGCA...................................................................................................... 24 1 1 1.00 1 1 0
.....................................................................AAACATCCTTGACTGGAAGCTA..................................................................................................... 22 1 1 1.00 1 0 1
............................................................................................................CTTTCAGGCGGATGTTTACAG............................................................... 21 1 1 1.00 1 1 0
........................................................................CATCCTTGACTGGAAGCTAT.................................................................................................... 20 1 2 1.00 2 2 0
...................................................................ATAAACATCCTTGACTGGATGCT...................................................................................................... 23 2 1 1.00 1 0 1
.............................................................................................................TTTCAGTCGGATGTTTACAG............................................................... 20 0 1 1.00 1 0 1
..................................................................TGTAACCATCCTTGACTGGAAG........................................................................................................ 22 1 1 1.00 1 0 1
..........................................................................TCCTTGACTGGAAGC....................................................................................................... 15 0 4 1.00 4 4 0
............................................................................................................CTTTCTGTCGGATGTTTACAGA.............................................................. 22 2 1 1.00 1 0 1
......................................................................AACATCCTTGACTGGAA......................................................................................................... 17 0 1 1.00 1 0 1
.................................................................ATGTAAACATCCTTGATTGGAA......................................................................................................... 22 2 1 1.00 1 0 1
.....................................................................AAACATCCTTGACTGGAAGCTT..................................................................................................... 22 1 1 1.00 1 0 1
..............................................................................................................TTCAGTCGGATGTTTACAG............................................................... 19 0 1 1.00 1 1 0
..................................................................TGTACACATCCTTGACTGG........................................................................................................... 19 1 1 1.00 1 0 1
.......................................................................ACATCCTTGACTGGAAGC....................................................................................................... 18 0 1 1.00 1 1 0
..................................................................TGTAAACATCCTTGACTGGAAGCTAAAAG................................................................................................. 29 2 1 1.00 1 0 1
..................................................................CGTAAACATCCTTGACTGGAA......................................................................................................... 21 1 1 1.00 1 0 1
....................................................................TAAACATCCTTGACTGGAA......................................................................................................... 19 0 1 1.00 1 1 0
.................................................................ATGTAAACATCCTTGACTGGAAGCTA..................................................................................................... 26 2 1 1.00 1 0 1
..................................................................TGTAAACATCCTTGACTGGAAA........................................................................................................ 22 1 1 1.00 1 1 0
...................................................................ATAAACATCCTTGACTGGAAGCT...................................................................................................... 23 1 1 1.00 1 0 1
..................................................................TGTAAACATCCTTGACTGGAAGCTCGAAAG................................................................................................ 30 3 1 1.00 1 0 1
............................................................................................................CTTTCAGTCGGATGTTTAAAA............................................................... 21 2 3 0.67 2 2 0
................................................................AATGTAAACATCCTTGACTGGAAGCT...................................................................................................... 26 2 2 0.50 1 0 1
.........................................................................ATCCTTGACTGGAAGC....................................................................................................... 16 0 2 0.50 1 1 0
..........................................................................................................ACCTTTCAGTCGGATGTTTGCA................................................................ 22 2 2 0.50 1 0 1
............................................................................................................GTTTCAGTCGGATGTTTACAGT.............................................................. 22 2 2 0.50 1 1 0
......................................................................AACATCCTTGACTGG........................................................................................................... 15 0 2 0.50 1 0 1
.........................................................................ATCCTTGACTGGAAG........................................................................................................ 15 0 6 0.33 2 1 1
..................................................................TGTAAACATCCTTGACTGGAAAAA...................................................................................................... 24 3 3 0.33 1 0 1
.....................................................................AAACATCCTTGACTGGATGT....................................................................................................... 20 2 10 0.30 3 3 0
........................................................................CATCCTTGACTGGAATCT...................................................................................................... 18 1 4 0.25 1 1 0
...........................................................................CCTTGACTGGAAGCT...................................................................................................... 15 0 7 0.14 1 1 0
.........................................................................ATCCTTGACTGGAAGCC...................................................................................................... 17 1 16 0.06 1 1 0
..........................................................................TCGTTGACTGGAAGCT...................................................................................................... 16 1 19 0.05 1 1 0
........................................................................CATCCTTGACTGGAAGT....................................................................................................... 17 1 20 0.05 1 1 0
..........................................................................ACCTTGACTGGAAGCTGTAAAC................................................................................................ 22 3 20 0.05 1 0 1

Anti-sense strand reads

ACTACAGAATTGGCCTCGTGGCACGCGGAGTGACGTCGAGGCGAGAGGGACCCGTCAGAAACGACGACATTTGTAGGAACTGACCTTCGACATTCCACAATTCTCCTCGAAAGTCAGCCTACAAATGTCGCCGTCCGACGGTGCCAGCAGGGGCCGACGAGTAGCGGGACTTAGTACCGTCCAAACACGGGG
*************************************************((((((((..((((((((((((((((..(((((((((((................)))))))))))))))))))))))))))))))))))..*************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:32 AM