ID:

ocu-mir-30d

 Coordinate:

chr3:150424937-150425016 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-29.2 -29.1 -28.9

Sense Strand Reads

TGCCTGGTGACGTTTGTGTCTCTTCTTCCGGTTTTAAGTTGTTGTTCAGAAAGTCTGTTGTTGTAAACATCCCCGACTGGAAGCTGTAAAACAACTAAGCTTTCAGTCAGATGTTTGCTGCTACCGGCTATTCACAGACGTCATCTAGCTATAACTGTACGTAAGGATTGAAGTTGAGGA
*****************************************************.(((..((.(((((((((...(((((((((((............))))))))))).))))))))).))...)))........********************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528821
Adult_testes_Mili_IP		 GSM1528820
Adult_testes
............................................................ATGTAAACATCCCCGACTGGAAG................................................................................................. 23 1 1 222.00 222 219 3
....................................................................ATCCCCGACTGGAAGCT............................................................................................... 17 0 1 189.00 189 0 189
.............................................................TGTAAACATCCCCGACTGGAAG................................................................................................. 22 0 1 145.00 145 36 109
............................................................ATGTAAACATCCCCGACTGGAA.................................................................................................. 22 1 1 85.00 85 84 1
.............................................................TGTAAACATCCCCGACTGGAAGCT............................................................................................... 24 0 1 52.00 52 2 50
............................................................ATGTAAACATCCCCGACTGGAAGC................................................................................................ 24 1 1 44.00 44 43 1
.............................................................TGTAAACATCCCCGACTGGAA.................................................................................................. 21 0 1 34.00 34 6 28
............................................................ATGTAAACATCCCCGACTGGA................................................................................................... 21 1 1 29.00 29 29 0
...................................................................CATCCCCGACTGGAAGCT............................................................................................... 18 0 1 29.00 29 0 29
.............................................................TGTAAACATCCCCGACTGGAAGC................................................................................................ 23 0 1 26.00 26 10 16
.............................................................TGTAAACATCCCCGACTGGA................................................................................................... 20 0 1 26.00 26 1 25
............................................................ATGTAAACATCCCCGACTGGAAGCT............................................................................................... 25 1 1 21.00 21 21 0
............................................................ATGTAAACATCCCCGACTGG.................................................................................................... 20 1 1 20.00 20 20 0
............................................................ATGTAAACATCCCCGACTG..................................................................................................... 19 1 1 12.00 12 12 0
..........................................................GCTTGTAAACATCCCCGACTGG.................................................................................................... 22 2 1 8.00 8 0 8
....................................................................ATCCCCGACTGGAAGC................................................................................................ 16 0 2 8.00 16 0 16
............................................................ATGTAAACATCCCCGACTGGAAGCTT.............................................................................................. 26 2 1 7.00 7 7 0
...................................................................................................CTTTCAGTCAGATGTTTGCTG............................................................ 21 0 1 7.00 7 0 7
.............................................................TGTAAACATCCCCGACTGG.................................................................................................... 19 0 1 6.00 6 4 2
...................................................................................................CTTTCAGTCAGATGTTTGCTGT........................................................... 22 1 1 6.00 6 0 6
.............................................................TGTAAACATCCCCGACTGGAAGCTT.............................................................................................. 25 1 1 4.00 4 3 1
.............................................................TGTAAACATCCCCGACTG..................................................................................................... 18 0 1 4.00 4 3 1
...................................................................CATCCCCGACTGGAAGC................................................................................................ 17 0 2 3.00 6 0 6
..................................................................AAATCCCCGACTGGAAGCT............................................................................................... 19 1 1 3.00 3 0 3
................................................................AAACATCCCCGACTGGAAG................................................................................................. 19 0 1 3.00 3 3 0
...................................................................CATCCCCGACTGGAAG................................................................................................. 16 0 2 3.00 6 0 6
............................................................ATGTAGACATCCCCGACTGGAAG................................................................................................. 23 2 1 3.00 3 3 0
..............................................................GTAAACATCCCCGACTGGAA.................................................................................................. 20 0 1 3.00 3 1 2
.............................................................TGTAAACATCCCCGACTGGAAGCTA.............................................................................................. 25 1 1 3.00 3 0 3
............................................................ATGTAAACATCCCCGACTGGAAGCTGT............................................................................................. 27 1 1 3.00 3 3 0
............................................................ATGGAAACATCCCCGACTGGAAG................................................................................................. 23 2 1 3.00 3 3 0
..................................................................ACATCCCCGACTGGAAGCT............................................................................................... 19 0 1 3.00 3 0 3
............................................................ATGTAAACATCCCCGACTGGAAGCTTT............................................................................................. 27 2 1 3.00 3 3 0
.............................................................TGTAAACATCCCCGACTGGAAGCTAT............................................................................................. 26 1 1 3.00 3 0 3
.................................................................AACATCCCCGACTGGAAG................................................................................................. 18 0 1 3.00 3 0 3
..............................................................GTAAACATCCCCGACTGGAAGCT............................................................................................... 23 0 1 2.00 2 0 2
............................................................ATGTAAACATCCCCGACTGGAAGCTTTT............................................................................................ 28 3 1 2.00 2 2 0
...............................................................AAAACATCCCCGACTGGAAG................................................................................................. 20 1 1 2.00 2 2 0
.............................................................TGTAAACATCCCCGACTGGAAGT................................................................................................ 23 1 1 2.00 2 0 2
................................................................AAACATCCCCGACTGGAAGC................................................................................................ 20 0 1 2.00 2 0 2
....................................................................ATCCCCGACTGGAAG................................................................................................. 15 0 2 2.00 4 0 4
.............................................................TGTAAACATCCCCGACTGGAAGCA............................................................................................... 24 1 1 2.00 2 0 2
.................................................................AACATCCCCGACTGGAAGC................................................................................................ 19 0 1 2.00 2 0 2
....................................................................................................TTTCAGTCAGATGTTTGCT............................................................. 19 0 1 2.00 2 0 2
....................................................................ATCCCCGACTGTAAGCT............................................................................................... 17 1 4 1.25 5 0 5
....................................................................ATCCCCGACTGGAAGCTT.............................................................................................. 18 1 4 1.25 5 0 5
............................................................AAGTAAACATCCCCGACTGGAAG................................................................................................. 23 2 1 1.00 1 1 0
............................................................ATGGAAACATCCCCGACTGGCAG................................................................................................. 23 3 1 1.00 1 1 0
...........................................................CTTGTAAACATCCCCGACTGGAA.................................................................................................. 23 1 1 1.00 1 1 0
............................................................ATGTAAACATCCCCGACTGGAAGCTATT............................................................................................ 28 3 1 1.00 1 1 0
............................................................TTGTAAACATCCCCGACTGGA................................................................................................... 21 0 1 1.00 1 1 0
.................................................................AACATCCCCGACTGGAA.................................................................................................. 17 0 1 1.00 1 0 1
............................................................ATGTAAACATCCCCGACTGGAAA................................................................................................. 23 2 1 1.00 1 1 0
..........................................................AGATGTAAACATCCCCGACTGGAAG................................................................................................. 25 2 1 1.00 1 1 0
...................................................................................................CTTTCAGTCAGATGTTTGCTGC........................................................... 22 0 1 1.00 1 0 1
........................................................CCTGTTGTAAACATCCCCGACTGGAAG................................................................................................. 27 2 1 1.00 1 1 0
.........................................................GTTTTGTAAACATCCTCGACTGGAA.................................................................................................. 25 3 1 1.00 1 1 0
............................................................ATGTAAACATCCCCGACTGGAAGCTA.............................................................................................. 26 2 1 1.00 1 1 0
....................................................................................................TTTCAGTCAGATGTTTGCTGCTT......................................................... 23 1 1 1.00 1 0 1
............................................................ATGTAAACACCCCCGACTGGAAG................................................................................................. 23 2 1 1.00 1 1 0
..................................................................ACATCCCCGACTGGAA.................................................................................................. 16 0 2 1.00 2 0 2
............................................................ATGTAAACATCCCCGCCTGGAAG................................................................................................. 23 2 1 1.00 1 1 0
.............................................................TGTACACATCCCCGACTGGAAG................................................................................................. 22 1 1 1.00 1 0 1
............................................................ATGTAAACATCCCCGACTGGAAGCTTCA............................................................................................ 28 3 1 1.00 1 1 0
............................................................ATGTAAACATCCCCGACTAGAAG................................................................................................. 23 2 1 1.00 1 1 0
.............................................................TGTAAACATCCCCGACTGGAAGCTTTTT........................................................................................... 28 3 1 1.00 1 1 0
............................................................ATGTAAACATCCCCGACGGGAAG................................................................................................. 23 2 1 1.00 1 0 1
.............................................................GGTAAACATCCCCGACTGGAAG................................................................................................. 22 1 1 1.00 1 0 1
.......................................................GGGTGGTGTAAACATCCCCGAC....................................................................................................... 22 3 1 1.00 1 0 1
.........................................................TGGATGTAAACATCCCCGAC....................................................................................................... 20 2 1 1.00 1 0 1
............................................................ATGTAAACATCCCAGACTGGAAGC................................................................................................ 24 2 1 1.00 1 1 0
.............................................................TGTAAACATCCCCGACTGGAAA................................................................................................. 22 1 1 1.00 1 1 0
.............................................................TGTAAACATCCCCGACTGAAAG................................................................................................. 22 1 1 1.00 1 0 1
.............................................................TGGAAACATCCCCGACTGGAAG................................................................................................. 22 1 1 1.00 1 0 1
..............................................................GTAAACATCCCCGACTGGA................................................................................................... 19 0 1 1.00 1 1 0
.............................................................TGTTAACATCCCCGACTGGA................................................................................................... 20 1 1 1.00 1 0 1
.............................................................TGTAAACATCCCCGACTGGAAGCTTT............................................................................................. 26 1 1 1.00 1 1 0
............................................................ATGTAAACCTCCCCGACTGGAAG................................................................................................. 23 2 1 1.00 1 1 0
............................................................ATGTAAAAATCCCCGACTGGAAG................................................................................................. 23 2 1 1.00 1 1 0
....................................................................ATCCTCGACTGGAAGCTGTAAAC......................................................................................... 23 2 1 1.00 1 0 1
............................................................ATGTAAACATCCCCGACTGGGAG................................................................................................. 23 2 1 1.00 1 1 0
............................................................ATGTAAACACCCCCGACTGGAA.................................................................................................. 22 2 1 1.00 1 1 0
............................................................ATGTAAACATCCCCGACTGGAAGCTGTAAT.......................................................................................... 30 2 1 1.00 1 1 0
............................................................ATGTAAACATCCCCGACTGGAAGCTTTAG........................................................................................... 29 3 1 1.00 1 1 0
................................................................AAACATCCCCGACTAGAAGCT............................................................................................... 21 1 1 1.00 1 0 1
..............................................................GTAAACATCCCCGACTGGAAGC................................................................................................ 22 0 1 1.00 1 1 0
.................................................................AACATCCCCGACTGGAAGCTTGTA........................................................................................... 24 3 1 1.00 1 0 1
............................................................ATGAAAACATCCCCGACTGGAAGC................................................................................................ 24 2 1 1.00 1 1 0
...........................................................AATGTAAACATCCCCGACTGGAAGCT............................................................................................... 26 2 2 1.00 2 1 1
...................................................................................................CTTTCAGTCAGATGTTTGCT............................................................. 20 0 1 1.00 1 0 1
..............................................................GTAAACATCCCCGACTGGAAG................................................................................................. 21 0 1 1.00 1 1 0
...........................................................AATGTAAACATCCCCGACTGGAAGC................................................................................................ 25 2 2 1.00 2 0 2
.............................................................TGTAAACATCCCCGACTGGAAGCTGAT............................................................................................ 27 2 1 1.00 1 1 0
............................................................TTGTAAACATCCCCGACTGGAAG................................................................................................. 23 0 1 1.00 1 1 0
.............................................................AGTAAACATCCCCGACTGGAA.................................................................................................. 21 1 1 1.00 1 1 0
................................................................TAACATCCCCGACTGGAAG................................................................................................. 19 1 1 1.00 1 1 0
............................................................ATGTAAACATCCCCCACTGGAAG................................................................................................. 23 2 1 1.00 1 1 0
..............................................................GTAAAAATCCCCGACTGGAAG................................................................................................. 21 1 1 1.00 1 0 1
.............................................................TGTAAACATCCCAGACTGGAAG................................................................................................. 22 1 1 1.00 1 0 1
.............................................................TGTAAACCTCCCCGACTGGAAG................................................................................................. 22 1 1 1.00 1 0 1
............................................................ATGTAAACATCCCCGACTGGAAGCTATTA........................................................................................... 29 3 1 1.00 1 1 0
.............................................................TGTAAACATCCCCGACTGGTAG................................................................................................. 22 1 1 1.00 1 0 1
............................................................ATGTAAACATCCCCGACTGGAAGCTGTA............................................................................................ 28 1 1 1.00 1 1 0
................................................................AAACATCCCCGACTGGAAGCT............................................................................................... 21 0 1 1.00 1 1 0
............................................................CTGTAAACATCCCCGACTGGAAG................................................................................................. 23 1 2 0.50 1 0 1
............................................................CTGGAAACATCCCCGACTGGAAG................................................................................................. 23 2 2 0.50 1 0 1
.....................................................................TCCCCGACTGGAAGCT............................................................................................... 16 0 2 0.50 1 0 1
................................................................AAACATCCCCGACTGGATGT................................................................................................ 20 2 3 0.33 1 0 1
..........................................................GTTTGTAAACATCCCCGACTG..................................................................................................... 21 2 3 0.33 1 1 0
....................................................................ATCCCCGACTGGAACCT............................................................................................... 17 1 7 0.29 2 0 2
....................................................................ATCCCCGACTGGAAGCA............................................................................................... 17 1 7 0.29 2 0 2
............................................................ATGCAAACATCCCCGACTGGA................................................................................................... 21 2 4 0.25 1 1 0
............................................................ATGGAAATATCCCCGACTGGAAG................................................................................................. 23 3 4 0.25 1 1 0
...................................................................CATCCCCGACTGGAA.................................................................................................. 15 0 4 0.25 1 0 1
............................................................ATGTAAACATCCCCGACTGGAATA................................................................................................ 24 3 4 0.25 1 1 0
....................................................................ATCCCCGACAGGAAGCT............................................................................................... 17 1 9 0.11 1 0 1
..............................................CAGAAAGTCTGTTGT....................................................................................................................... 15 0 16 0.06 1 0 1
...................................................................CATCCCCGACTGGAAA................................................................................................. 16 1 20 0.05 1 0 1

Anti-sense strand reads

ACGGACCACTGCAAACACAGAGAAGAAGGCCAAAATTCAACAACAAGTCTTTCAGACAACAACATTTGTAGGGGCTGACCTTCGACATTTTGTTGATTCGAAAGTCAGTCTACAAACGACGATGGCCGATAAGTGTCTGCAGTAGATCGATATTGACATGCATTCCTAACTTCAACTCCT
*********************************************.(((..((.(((((((((...(((((((((((............))))))))))).))))))))).))...)))........***************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:43 AM