ID:

ocu-mir-30b

 Coordinate:

chr3:150418837-150418932 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.3 -39.9 -39.8

Sense Strand Reads

TTGCGTCAAGGACCAGTATAAACATAATAAAGCATTCCCTAAGTCCTACTCTAAACCAAGTTTCAGTTCATGTAAACATCCTACACTCAGCTGTAATACATGAATTGGCTGGGAGGTGGATGTTTACGTCAGCTGACTTGGAATACCAACCAATACTGCTAAGAGATTTGGCAAGAAAAATACAGAGGCTTGTTTT
*******************************************************(((((..((((((.((((((((((((.((.((((((((............))))))))..)))))))))))))).)))))))))))....*************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
......................................................................TGTAAACATCCTACACTCAGCT........................................................................................................ 22 0 1 249.00 249 226 23
......................................................................TGTAAACATCCTACACTCAG.......................................................................................................... 20 0 1 106.00 106 43 63
......................................................................TGTAAACATCCTACACTCAGC......................................................................................................... 21 0 1 34.00 34 23 11
......................................................................TGTAAACATCCTACACTCAGCTT....................................................................................................... 23 1 1 19.00 19 10 9
......................................................................TGTAAACATCCTACACTCAGCTA....................................................................................................... 23 1 1 16.00 16 5 11
.....................................................................ATGTAAACATCCTACACTCAG.......................................................................................................... 21 0 1 15.00 15 0 15
......................................................................TGTAAACATCCTACACTCAGCTAA...................................................................................................... 24 2 1 11.00 11 0 11
.......................................................................GTAAACATCCTACACTCAG.......................................................................................................... 19 0 1 9.00 9 0 9
.....................................................................ATGTAAACATCCTACACTCAGCT........................................................................................................ 23 0 1 9.00 9 3 6
......................................................................TGTAAACATCCTACACTCA........................................................................................................... 19 0 1 6.00 6 3 3
......................................................................TGTAAACATTCTACACTCAGCT........................................................................................................ 22 1 1 5.00 5 5 0
..........................................................................AACATCCTACACTCAG.......................................................................................................... 16 0 1 5.00 5 1 4
......................................................................TGTAAACATCCTACACTCAGCTGA...................................................................................................... 24 1 1 3.00 3 0 3
......................................................................TGTAAACATCCTACACTCAGCTTT...................................................................................................... 24 1 1 3.00 3 0 3
......................................................................TGTAAACATCCTACACTCAGCTC....................................................................................................... 23 1 1 2.00 2 1 1
.....................................................................ATGTAAACATCCTACACTCA........................................................................................................... 20 0 1 2.00 2 0 2
.......................................................................GTAAACATCCTACACTCAGCT........................................................................................................ 21 0 1 2.00 2 1 1
.......................................................................GTAAACATCCTACACTCAGCTA....................................................................................................... 22 1 1 2.00 2 0 2
......................................................................TGCAAACATCCTACACTCAG.......................................................................................................... 20 1 1 2.00 2 1 1
.......................................................................GTAAACATCCTACACTCA........................................................................................................... 18 0 1 2.00 2 0 2
......................................................................TGTAAACATCCTACACTCAGCTG....................................................................................................... 23 0 1 2.00 2 0 2
......................................................................TGTAAACATCCTACACTCAGCTGT...................................................................................................... 24 0 1 2.00 2 2 0
............................................................................................................CTGGGAGGTGGATGTTTACGTC.................................................................. 22 0 1 2.00 2 2 0
.............................................................................ATCCTACACTCAGCT........................................................................................................ 15 0 5 1.40 7 7 0
......................................................................TGTAAACATCCTACACTCAGCTATT..................................................................................................... 25 2 1 1.00 1 0 1
......................................................................TGTAAACATCCTACACTCAGCTAT...................................................................................................... 24 1 1 1.00 1 1 0
.....................................................................ATGTAAAGATCCTACACTCAGCTGA...................................................................................................... 25 2 1 1.00 1 0 1
.....................................................................ATGTAAACATCCTACACTCAGCTGA...................................................................................................... 25 1 1 1.00 1 0 1
.....................................................................ATGTAAACATCCTACACTCAGC......................................................................................................... 22 0 1 1.00 1 0 1
.........................................................................AAACATCCTACACTCAG.......................................................................................................... 17 0 1 1.00 1 0 1
......................................................................TGTGAACATCCTACACTCAG.......................................................................................................... 20 1 1 1.00 1 0 1
......................................................................TGTAAACATCCTACACTTAGCT........................................................................................................ 22 1 1 1.00 1 1 0
.....................................................................ATGTAAACATCCTACACTCAGCTAA...................................................................................................... 25 2 1 1.00 1 0 1
......................................................................TGTAAACATCCTACACTCAGCAA....................................................................................................... 23 2 1 1.00 1 0 1
............................................................................CATCCTACACTCAGCT........................................................................................................ 16 0 1 1.00 1 1 0
.....................................................................ATGTAAACATCCTACACTCAGCTGAA..................................................................................................... 26 1 1 1.00 1 0 1
.....................................................................ATGTAAACATCCTACACTCAGCTAAA..................................................................................................... 26 2 1 1.00 1 0 1
......................................................................TGTAAACATCCTACACTCAGT......................................................................................................... 21 1 1 1.00 1 1 0
........................................................................TAAACATCCTACACTCAG.......................................................................................................... 18 0 1 1.00 1 0 1
....................................................................AATGTAAACATCCTACACTCAGCTGTA..................................................................................................... 27 1 1 1.00 1 0 1
....................................................................AATGTAAACATCCTACACTCAG.......................................................................................................... 22 1 1 1.00 1 0 1
......................................................................TGTAAACATCCTACACTCAGCTAAT..................................................................................................... 25 3 1 1.00 1 0 1
......................................................................TGTAAACATCCTACACTCAGCTTAAG.................................................................................................... 26 3 1 1.00 1 0 1
.......................................................................GTAAACATCCTACACTCAGCTAA...................................................................................................... 23 2 1 1.00 1 0 1
......................................................................TGTAAACATCCTACACTCAGCTTA...................................................................................................... 24 2 1 1.00 1 0 1
.....................................................................ATGTAAACATCCTACACTCAGCTA....................................................................................................... 24 1 1 1.00 1 0 1
..........................................................................AACATCCTACACTCAGCT........................................................................................................ 18 0 1 1.00 1 0 1
......................................................................TGTAAACATCCTACAATCAGCT........................................................................................................ 22 1 1 1.00 1 1 0
.................................................................GGCCCTGTAAACATCCTACACTCAG.......................................................................................................... 25 3 1 1.00 1 0 1
......................................................................TATAAACATCCTACACTCAG.......................................................................................................... 20 1 1 1.00 1 0 1
......................................................................TGTAAACATACTACACTCAGC......................................................................................................... 21 1 1 1.00 1 1 0
................................................................TGGTCTTGTAAACATCCTACACTCAGCT........................................................................................................ 28 3 1 1.00 1 0 1
.....................................................................ATGTAAACATCCTACACTCT........................................................................................................... 20 1 3 0.67 2 0 2
......................................................................TGTAAACATCCTATACTCAG.......................................................................................................... 20 1 2 0.50 1 1 0
...........................................................................ACATCCTACACTCAGC......................................................................................................... 16 0 2 0.50 1 0 1
........................................................................AAAACATCCTACACTCAGCTA....................................................................................................... 21 2 3 0.33 1 0 1
...........................................................................ACATCCTACACTCAG.......................................................................................................... 15 0 4 0.25 1 1 0
...................................................................ATGTGTAAACATCCTACACTCAG.......................................................................................................... 23 3 5 0.20 1 0 1
............................................................................CATCCTACACTCAGCTA....................................................................................................... 17 1 11 0.09 1 0 1

Anti-sense strand reads

AACGCAGTTCCTGGTCATATTTGTATTATTTCGTAAGGGATTCAGGATGAGATTTGGTTCAAAGTCAAGTACATTTGTAGGATGTGAGTCGACATTATGTACTTAACCGACCCTCCACCTACAAATGCAGTCGACTGAACCTTATGGTTGGTTATGACGATTCTCTAAACCGTTCTTTTTATGTCTCCGAACAAAA
***************************************************(((((..((((((.((((((((((((.((.((((((((............))))))))..)))))))))))))).)))))))))))....******************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:43 AM