ID:

ocu-mir-30a

 Coordinate:

chr12:58159839-58159908 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-37.9 -37.9 -37.5

Sense Strand Reads

CAGGTTAAGCAAACAGAAAGTTAAAGAAGGCGTGTGGCTGCTGGCAGTGAGCGACTGTAAACATCCTCGACTGGAAGCTGTGAGGCGCAGACGGGCTTTCAGTCGGATGTTTGCAGCTGCCGACTGCCCCCGACTTCCAGGAGCTACTCCAGGTGCCCTGGCGTTGTGTG
***********************************************...(((.((((((((((((..(((((((((((((.........)).))))))))))))))))))))))).)))..........**************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
..............................................................ATCCTCGACTGGAAGCT........................................................................................... 17 0 1 176.00 176 176 0
.......................................................TGTAAACATCCTCGACTGGAAG............................................................................................. 22 0 1 103.00 103 61 42
.............................................................CATCCTCGACTGGAAGCT........................................................................................... 18 0 1 44.00 44 44 0
.......................................................TGTAAACATCCTCGACTGGAAGCT........................................................................................... 24 0 1 39.00 39 32 7
..............................................................ATCCTCGACTGGAAGC............................................................................................ 16 0 1 34.00 34 34 0
.......................................................TGTAAACATCCTCGACTGGAAGC............................................................................................ 23 0 1 28.00 28 15 13
.......................................................TGTAAACATCCTCGACTGGAA.............................................................................................. 21 0 1 21.00 21 12 9
.............................................................CATCCTCGACTGGAAGC............................................................................................ 17 0 1 17.00 17 17 0
.......................................................TGTAAACATCCTCGACTGGA............................................................................................... 20 0 1 17.00 17 14 3
...............................................................................................CTTTCAGTCGGATGTTTGCAGT..................................................... 22 1 1 14.00 14 12 2
........................................................GTAAACATCCTCGACTGGAAG............................................................................................. 21 0 1 12.00 12 9 3
...............................................................TCCTCGACTGGAAGCT........................................................................................... 16 0 1 9.00 9 9 0
..............................................................ATCCTCGACTGGAAGCTT.......................................................................................... 18 1 1 9.00 9 9 0
...............................................................................................CTTTCAGTCGGATGTTTGCA....................................................... 20 0 1 8.00 8 2 6
.......................................................TGTAAACATCCTCGACTGGAAGCTT.......................................................................................... 25 1 1 7.00 7 4 3
...............................................................................................CTTTCAGTCGGATGTTTGC........................................................ 19 0 1 7.00 7 6 1
.......................................................TGTAAACATCCTCGACTGG................................................................................................ 19 0 1 6.00 6 4 2
............................................................ACATCCTCGACTGGAAGCTAAGC....................................................................................... 23 3 1 6.00 6 6 0
...............................................................................................CTTTCAGTCGGATGTTTGCAGC..................................................... 22 0 1 6.00 6 1 5
......................................................ATGTAAACATCCTCGACTGGAAG............................................................................................. 23 1 1 5.00 5 0 5
............................................................ACATCCTCGACTGGAAGCT........................................................................................... 19 0 1 5.00 5 5 0
............................................................ACATCCTCGACTGGA............................................................................................... 15 0 1 5.00 5 5 0
.............................................................CATCCTCGACTGGAAGCTT.......................................................................................... 19 1 1 5.00 5 5 0
...............................................................................................CTTTCAGTCGGATGTTTGCAG...................................................... 21 0 1 4.00 4 3 1
.......................................................TGTAAACATCCTCGACTGGAAGCA........................................................................................... 24 1 1 4.00 4 4 0
.............................................................CATCCTCGACTGGAAG............................................................................................. 16 0 2 4.00 8 7 1
..............................................................ATCCTCGACTGGAAG............................................................................................. 15 0 2 3.00 6 6 0
........................................................GTAAACATCCTCGACTGGAAGC............................................................................................ 22 0 1 3.00 3 0 3
..............................................................ATCCTCGACTGGAAGCTA.......................................................................................... 18 1 1 3.00 3 3 0
........................................................GTAAACATCCTCGACTGGAAGCTT.......................................................................................... 24 1 1 3.00 3 3 0
...............................................................................................CTTTCAGTCGGACGTTTGCAG...................................................... 21 1 1 3.00 3 3 0
................................................................................................TTTCAGTCGGATGTTTGCAGCA.................................................... 22 1 1 3.00 3 3 0
.......................................................TGTAAACATCCTCGACTGGAAGCTTA......................................................................................... 26 2 1 3.00 3 2 1
......................................................ATGTAAACATCCTCGACTGGAAGC............................................................................................ 24 1 1 2.00 2 0 2
................................................................................................TTTCAGTCGGATGTTTG......................................................... 17 0 1 2.00 2 2 0
........................................................GTAAACATCCTCGACTGGAA.............................................................................................. 20 0 1 2.00 2 2 0
........................................................GTAAACATCCTCGACTGGAAGCT........................................................................................... 23 0 1 2.00 2 2 0
...................................................AAAATGTAAACATCCTCGACTGGAA.............................................................................................. 25 3 1 2.00 2 2 0
.........................................................AAAACATCCTCGACTGGAAGCT........................................................................................... 22 1 1 2.00 2 2 0
.......................................................TGTAAACATCCTCGACTG................................................................................................. 18 0 1 2.00 2 2 0
............................................................ACATCCTCGACTGGAAGCC........................................................................................... 19 1 1 2.00 2 2 0
................................................................................................TTTCAGTCGGATGTTTGCAG...................................................... 20 0 1 2.00 2 2 0
.......................................................TGTAAACATCCTCGACTGGAAGCTTT......................................................................................... 26 1 1 2.00 2 0 2
...............................................................................................CTTTCAGTCGGATGTTTACAGTT.................................................... 23 2 2 1.50 3 3 0
...............................................................................................CTTTCAGTCGGATGTTT.......................................................... 17 0 2 1.50 3 1 2
........................................................GTAAACATCCTCGACTGGAAGCTTC......................................................................................... 25 2 1 1.00 1 0 1
..............................................................................................ACTTTCAGTCGGATGTTTGCAGT..................................................... 23 2 1 1.00 1 1 0
...........................................................AACATCCTCGACTGGAA.............................................................................................. 17 0 1 1.00 1 0 1
...............................................................................................CTTTCAGTCGGATGTTTGCAGCCTA.................................................. 25 3 1 1.00 1 0 1
...............................................................................................CTTTCAGTCGGATGTTTGCAGCA.................................................... 23 1 1 1.00 1 0 1
...............................................................................................CTTTCAGCCGGATGTTTGCAG...................................................... 21 1 1 1.00 1 1 0
..........................................................AAACATCCTCGACTGGAAGCT........................................................................................... 21 0 1 1.00 1 1 0
..............................................................ATCCTCGACTGGAAGCTAT......................................................................................... 19 1 1 1.00 1 1 0
......................................................ATGTAAACATCCTCGACTGGAAGCT........................................................................................... 25 1 1 1.00 1 0 1
......................................................ATGTAAACATCCTCGACTGGAAGCTT.......................................................................................... 26 2 1 1.00 1 0 1
.......................................................TGTAAACATCCTCGACTGGAAAA............................................................................................ 23 2 1 1.00 1 0 1
...............................................................................................CTTTCAGTCGGATGTTTGCAGTAA................................................... 24 3 1 1.00 1 0 1
...................................................CCTCTGTAAACATCCTCGACTGGAA.............................................................................................. 25 2 1 1.00 1 0 1
.......................................................TGGAAACATCCTCGACTGGAAG............................................................................................. 22 1 1 1.00 1 1 0
......................................................ATGTAAACATCCTCGACTGGAAGCTTA......................................................................................... 27 3 1 1.00 1 0 1
.......................................................TGTAAACATCCTCGACTGGAAGCTAA......................................................................................... 26 2 1 1.00 1 0 1
.......................................................TGTAAACATCCTCGACTGGAAGCTA.......................................................................................... 25 1 1 1.00 1 1 0
..............................................................................................ACTTTCAGTCGGATGTTTGCAG...................................................... 22 1 1 1.00 1 1 0
.......................................................TGTAAACATCCTCCACTGGAAG............................................................................................. 22 1 1 1.00 1 1 0
...............................................................................................CTTTCAGTCGGATGTTTGCAGTA.................................................... 23 2 1 1.00 1 0 1
..............................................................ATCCTCGACTGGAAGCTTT......................................................................................... 19 1 1 1.00 1 1 0
.......................................................TGTAAAAATCCTCGACTGG................................................................................................ 19 1 1 1.00 1 1 0
.......................................................TGTAAACATCGTCGACTGGAAGCTATT........................................................................................ 27 3 1 1.00 1 1 0
...............................................................................................CTTTCAGTCGGATGTTTGCAGA..................................................... 22 1 1 1.00 1 1 0
.......................................................TGTAAACATCCTCGACTGGAAGCTTAT........................................................................................ 27 3 1 1.00 1 1 0
.......................................................TGTTAACATCCTCGACTGGAAGCTT.......................................................................................... 25 2 1 1.00 1 1 0
................................................................................................TTTCAGTCGGATGTTTGCAGT..................................................... 21 1 1 1.00 1 0 1
...........................................................AACATCCTCGACTGGAAGCT........................................................................................... 20 0 1 1.00 1 1 0
........................................................GGAAACATCCTCGACTGGAA.............................................................................................. 20 1 1 1.00 1 0 1
.....................................................AATGTAAACATCCCCGACTGGAAGCT........................................................................................... 26 2 2 1.00 2 1 1
.......................................................TGTAAACATCCTCAACTGGAAGCT........................................................................................... 24 1 1 1.00 1 1 0
..........................................................AAACATCCTCGACTGGAAGCTTGT........................................................................................ 24 3 1 1.00 1 1 0
................................................................................................TTTCAGTCGGATGTTTGC........................................................ 18 0 1 1.00 1 1 0
........................................................................................AGACCACCTTTCAGTCGGATGTTTGCA....................................................... 27 3 1 1.00 1 0 1
.....................................................AATGTAAACATCCCCGACTGGAAGC............................................................................................ 25 2 2 1.00 2 2 0
..........................................................AAACATCCTCGACTGGAAG............................................................................................. 19 0 1 1.00 1 1 0
.................................................AAGGACTGTAAACATCCTCGACTGGAAGCTT.......................................................................................... 31 3 1 1.00 1 0 1
......................................................CTGTAAACATCCCCGACTGGAAG............................................................................................. 23 1 2 0.50 1 1 0
.....................................................AATGTAAACATCCTTGACTGGAAGCT........................................................................................... 26 2 2 0.50 1 0 1
.......................................................GGTAAAAATCCTCGACTGGAA.............................................................................................. 21 2 2 0.50 1 1 0
.............................................................................................ACCTTTCAGTCGGATGTTTGCA....................................................... 22 2 2 0.50 1 0 1
......................................................CTGGAAACATCCCCGACTGGAAG............................................................................................. 23 2 2 0.50 1 1 0
..........................................................AAACATCCTCGACTGGATGT............................................................................................ 20 2 2 0.50 1 1 0
...................................................................................................CAGTCGGATGTTTGCAGT..................................................... 18 1 3 0.33 1 1 0
..............................................................ATCCTCGACTGGACGCT........................................................................................... 17 1 3 0.33 1 1 0
..............................................................ATCCTCGACTGGAAGCC........................................................................................... 17 1 3 0.33 1 1 0
...................................................AGCTTGTAAACATCCTCGACTG................................................................................................. 22 3 9 0.11 1 0 1

Anti-sense strand reads

GTCCAATTCGTTTGTCTTTCAATTTCTTCCGCACACCGACGACCGTCACTCGCTGACATTTGTAGGAGCTGACCTTCGACACTCCGCGTCTGCCCGAAAGTCAGCCTACAAACGTCGACGGCTGACGGGGGCTGAAGGTCCTCGATGAGGTCCACGGGACCGCAACACAC
****************************************...(((.((((((((((((..(((((((((((((.........)).))))))))))))))))))))))).)))..........*********************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:30 AM