ID:

ocu-mir-3074-2

 Coordinate:

chrUn0990:23704-23789 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

CCGTCCCAGATGCACAGCCAGGTGAAGGCAGCGGCCGCCAGCGTCCAAGCGGGCTCGACTCCTGTTCCTGCTGAACTGAGCCAGTGTCCACGACATCAACTGTGTTTCAGCTCAGTAGGTACGGGAGGCGGAGCCCAGGGCGGCCGGGCGGCGGTGGGCAGTCAGGCGAGGTAGGGGCCAGAGGGC
***********************************((((..(((((....((((((..(((((((.((((((((.(((((((((((((...)))....)))).)).)))).)))))))).)))))))...)))))).)))))....)))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Anti-sense strand reads

GGCAGGGTCTACGTGTCGGTCCACTTCCGTCGCCGGCGGTCGCAGGTTCGCCCGAGCTGAGGACAAGGACGACTTGACTCGGTCACAGGTGCTGTAGTTGACACAAAGTCGAGTCATCCATGCCCTCCGCCTCGGGTCCCGCCGGCCCGCCGCCACCCGTCAGTCCGCTCCATCCCCGGTCTCCCG
***********************************((((..(((((....((((((..(((((((.((((((((.(((((((((((((...)))....)))).)).)))).)))))))).)))))))...)))))).)))))....)))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
..............................................................ACAAGGACGACTTGACTCGGT....................................................................................................... 21 0 2 194.50 389 112 277
...............................................................CAAGGACGACTTGACTCGGT....................................................................................................... 20 0 2 74.00 148 110 38
............................................................TGACAAGGACGACTTGACTCGGT....................................................................................................... 23 1 2 66.00 132 116 16
.............................................................GACAAGGACGACTTGACTCGGT....................................................................................................... 22 0 2 62.00 124 77 47
............................................................AGACAAGGACGACTTGACTCGGT....................................................................................................... 23 1 2 11.00 22 18 4
..............................................................ACAAGGACGACTTGACTCGGTA...................................................................................................... 22 1 2 8.50 17 1 16
................................................................AAGGACGACTTGACTCGGT....................................................................................................... 19 0 2 8.50 17 8 9
..............................................................ACAAGGACGACTTGACTCGG........................................................................................................ 20 0 2 6.50 13 0 13
.............................................................GACAAGGACGACTTGA............................................................................................................. 16 0 3 5.33 16 16 0
...........................................................TTGACAAGGACGACTTGACTCGGT....................................................................................................... 24 2 2 5.00 10 6 4
...............................................................CAAGGACGACTTGACTCGG........................................................................................................ 19 0 2 4.50 9 3 6
.............................................................GACAAGGACGACTTGACTCGG........................................................................................................ 21 0 2 4.00 8 4 4
.............................................................GACAAGGACGACTTGACTCGGTA...................................................................................................... 23 1 2 3.50 7 1 6
...............................................................TAAGGACGACTTGACTCGGT....................................................................................................... 20 1 2 3.50 7 7 0
.............................................................GACAAGGACGACTTGAC............................................................................................................ 17 0 3 3.33 10 10 0
.....................................................................................................CACAAAGTCGAGTCATCCATG................................................................ 21 0 1 3.00 3 0 3
.................................................................AGGACGACTTGACTCGGT....................................................................................................... 18 0 2 3.00 6 2 4
...........................................................TAGACAAGGACGACTTGACTCGGT....................................................................................................... 24 2 2 2.50 5 5 0
............................................................TGACAAGGACGACTTGACT........................................................................................................... 19 1 3 2.33 7 7 0
...........................................................TTGACAAGGACGACTTGACTCG......................................................................................................... 22 2 2 2.00 4 4 0
............................................................TGACAAGGACGACTTGACTCGG........................................................................................................ 22 1 2 2.00 4 4 0
....................................................................................................ACACAAAGTCGAGTCATCCATG................................................................ 22 0 1 2.00 2 0 2
................................................................TAGGACGACTTGACTCGGT....................................................................................................... 19 1 4 2.00 8 8 0
..........................................................TTTGACAAGGACGACTTGACTCGGT....................................................................................................... 25 3 2 2.00 4 3 1
.............................................................GACAAGGACGACTTGACTCG......................................................................................................... 20 0 2 2.00 4 0 4
.............................................................CACAAGGACGACTTGACTCGGT....................................................................................................... 22 1 2 1.50 3 2 1
..............................................................ACAAGGACGACTTGACTCGGTAA..................................................................................................... 23 1 2 1.50 3 0 3
...............................................................CAAGGACGACTTGACTCGGTA...................................................................................................... 21 1 2 1.50 3 1 2
...........................................................TGGACAAGGACGACTTGACTCG......................................................................................................... 22 1 2 1.50 3 2 1
...........................................................ATGACAAGGACGACTTGACTCGGT....................................................................................................... 24 1 2 1.50 3 0 3
..............................................................ACAAGGACGACTTGACTCGGA....................................................................................................... 21 1 2 1.50 3 3 0
.............................................................GACAATGACGACTTGACTCGGT....................................................................................................... 22 1 2 1.50 3 3 0
............................................................TGACAAGGACGACTTGAC............................................................................................................ 18 1 7 1.14 8 8 0
......................................................................................................TCAAAGTCGAGTCATCCATG................................................................ 20 1 1 1.00 1 0 1
...............................................................AAAGGACGACTTGACTCGGT....................................................................................................... 20 1 2 1.00 2 2 0
....................................................................................................ACACAAAGTCGAGTCATCCAT................................................................. 21 0 1 1.00 1 0 1
.............................................................GACAAGGACGACTTGACTC.......................................................................................................... 19 0 2 1.00 2 2 0
..............................................................ACAAGGACGACTTGACTCGGTCTAAGGG................................................................................................ 28 3 1 1.00 1 0 1
..............................................................ACAAGGACGACTTGACTAGGT....................................................................................................... 21 1 2 1.00 2 0 2
.............................................................GACAAGGACGACTTGACTCGGTGACAACT................................................................................................ 29 3 1 1.00 1 0 1
..............................................................ACAAGGACGACTTGACTCGGTCTGGG.................................................................................................. 26 3 1 1.00 1 0 1
............................................................TGACAAGGACGACTTGACTCG......................................................................................................... 21 1 2 1.00 2 2 0
..............................................................ACAAGGACGACTCGACTCGGT....................................................................................................... 21 1 2 1.00 2 0 2
.............................................................GACAAGGACGACTTGACTCGGA....................................................................................................... 22 1 2 1.00 2 1 1
..............................................................ACAAGGACGACTTGACTCGGTGTCAGGT................................................................................................ 28 2 1 1.00 1 0 1
...............................................................CAAGGACGACTTGACTCGGTC...................................................................................................... 21 0 2 1.00 2 2 0
.....................................................................................................CACAAAGTCGAGTCATCCAT................................................................. 20 0 1 1.00 1 0 1
............................................................TGACAAGGACGACTTGA............................................................................................................. 17 1 20 0.85 17 17 0
............................................................TGACAAGGACGACTTGACTCGGTA...................................................................................................... 24 2 3 0.67 2 2 0
............................................................AAACAAGGACGACTTGACTCGGT....................................................................................................... 23 2 3 0.67 2 0 2
............................................................TGACAATGACGACTTGACTCGGT....................................................................................................... 23 2 3 0.67 2 2 0
...............................................................CAAGGACGACTTGACTCGCT....................................................................................................... 20 1 2 0.50 1 1 0
..............................................................ACAAGGACGACTTGACTCGGTCTCGT.................................................................................................. 26 3 2 0.50 1 0 1
..............................................................ACAAGGACTACTTGACTCGGT....................................................................................................... 21 1 2 0.50 1 1 0
............................................................TGACAAGGACGACTTGCCTCGGT....................................................................................................... 23 2 2 0.50 1 1 0
.............................................................GACAAGGACGACTTTACTCGGT....................................................................................................... 22 1 2 0.50 1 0 1
............................................................CGACAAGGACGACTTGACTCGGT....................................................................................................... 23 1 2 0.50 1 1 0
..............................................................ACAAGGACGACTGGACTCGGT....................................................................................................... 21 1 2 0.50 1 0 1
.............................................................GTCAAGGACGACTTGACTCGGT....................................................................................................... 22 1 2 0.50 1 1 0
.............................................................GATAAGGACGACTTGACTCGGT....................................................................................................... 22 1 2 0.50 1 1 0
..............................................................TAAAGGACGACTTGACTCGGTCA..................................................................................................... 23 2 2 0.50 1 1 0
................................................................TAGGACGACTTGACTCGGTC...................................................................................................... 20 1 2 0.50 1 1 0
...........................................................TAGACAAGGATGACTTGACTCGGT....................................................................................................... 24 3 2 0.50 1 1 0
..............................................................ACAAGGATGACTTGACTCGGT....................................................................................................... 21 1 2 0.50 1 0 1
..............................................................ACAAGGACGACTTGACTCG......................................................................................................... 19 0 2 0.50 1 0 1
............................................................TGCCAAGGACGACTTGACTCGG........................................................................................................ 22 2 2 0.50 1 0 1
...............................................................CAAGGATGACTTGACTCGGT....................................................................................................... 20 1 2 0.50 1 1 0
..............................................................ATAAGGACGACTTGACTCGGT....................................................................................................... 21 1 2 0.50 1 0 1
.................................................................AGGACGACTTGACTCGG........................................................................................................ 17 0 2 0.50 1 0 1
..........................................................TATGACAAGAACGACTTGACTCGGT....................................................................................................... 25 3 2 0.50 1 1 0
...............................................................CAAGGACGACTTAACTCGGT....................................................................................................... 20 1 2 0.50 1 0 1
..............................................................GCAAGGACGACTTGACTCGGT....................................................................................................... 21 1 2 0.50 1 0 1
..............................................................ACAAGGCCGACTTGACTCGGT....................................................................................................... 21 1 2 0.50 1 1 0
...........................................................CAGACAAGGACGACTTGACTCGGT....................................................................................................... 24 2 2 0.50 1 1 0
..............................................................CCAAGGACGACTTGACTCGGT....................................................................................................... 21 1 2 0.50 1 0 1
.............................................................AACAAGGACGACTTGACTCGGT....................................................................................................... 22 1 2 0.50 1 1 0
..............................................................ACAAGGGCGACTTGACTCGGTA...................................................................................................... 22 2 2 0.50 1 0 1
..............................................................ACAAGGACGACTTGACT........................................................................................................... 17 0 4 0.50 2 2 0
.............................................................TTCAAGGACGACTTGACTCGGT....................................................................................................... 22 2 2 0.50 1 0 1
..............................................................ACAAGGACGACTTGACTCGGC....................................................................................................... 21 1 2 0.50 1 0 1
...............................................................CAAGGACGACTTGACTCGGTTG..................................................................................................... 22 2 2 0.50 1 0 1
..............................................................ACAAGGAAGACTTGACTCGGT....................................................................................................... 21 1 2 0.50 1 1 0
............................................................TGACAAGGACGAATTGACTCGGT....................................................................................................... 23 2 2 0.50 1 1 0
..............................................................ACAAGGACGACTTGACTCGGTTTTA................................................................................................... 25 3 2 0.50 1 0 1
..............................................................ACAAGGACGACTTGACTCGGTATC.................................................................................................... 24 2 2 0.50 1 0 1
..................................................................GGACGACTTGACTCGGTCA..................................................................................................... 19 0 3 0.33 1 1 0
..............................................................ACAAGGACGACCTGACTCGGTA...................................................................................................... 22 2 3 0.33 1 1 0
...............................................................CAAGGACGACCTGACTCGGT....................................................................................................... 20 1 3 0.33 1 0 1
..............................................................CAAAGGACGACTTGACTCGGT....................................................................................................... 21 2 3 0.33 1 1 0
............................................................TGACAAGGACGACTTGACTC.......................................................................................................... 20 1 3 0.33 1 1 0
..............................................................ACAAGGACGACTTGACTCGGTAAGG................................................................................................... 25 3 3 0.33 1 0 1
...................................................................GACGACTTGACTCGGT....................................................................................................... 16 0 4 0.25 1 1 0
............................................................TGACAAGGACGACTTG.............................................................................................................. 16 1 20 0.25 5 5 0
..............................................................ATAAGGACGACTTGACTCG......................................................................................................... 19 1 8 0.13 1 0 1
..............................................................ACAAGGACGACTTGAC............................................................................................................ 16 0 9 0.11 1 1 0
...............................................................CAAGGACGACTTGAC............................................................................................................ 15 0 15 0.07 1 1 0
..............................................................ACAAGGACGACTTGA............................................................................................................. 15 0 20 0.05 1 1 0

Generated: 05/16/2015 at 01:01 AM