ID:

ocu-mir-3074-1

 Coordinate:

chr1:74102773-74102857 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-47.9 -47.8 -47.6

Sense Strand Reads

CAGCGCGTGGGGGGCCGCGGCGCGGAGGGCCGGCGAGGCTTTTGGCTCGAGGGCTCCACTCCTGTTCCTGCTGAACTGAGCCAGTGTGTGAAACGAGAACTGATATCAGCTCAGTAGGCACCGGAGGGCGGGTCCAATCGGCAGCCCGGAGAGGCGGGCCTCGGCGGCGGCGGGCGGCGGCGGCA
***********************************.((((....((.(((((((((..((((.((.((((((((.((((..((((.............))))...)))).)))))))).)).))))...))))))..)))))))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
.....................................................................................................GATATCAGCTCAGTAGGCACCG.............................................................. 22 0 1 3.00 3 3 0
.....................................................................................................GATATCAGCTCAGTAGGCACCGT............................................................. 23 1 1 1.00 1 0 1

Anti-sense strand reads

GTCGCGCACCCCCCGGCGCCGCGCCTCCCGGCCGCTCCGAAAACCGAGCTCCCGAGGTGAGGACAAGGACGACTTGACTCGGTCACACACTTTGCTCTTGACTATAGTCGAGTCATCCGTGGCCTCCCGCCCAGGTTAGCCGTCGGGCCTCTCCGCCCGGAGCCGCCGCCGCCCGCCGCCGCCGT
***********************************.((((....((.(((((((((..((((.((.((((((((.((((..((((.............))))...)))).)))))))).)).))))...))))))..)))))))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
..............................................................ACAAGGACGACTTGACTCGGT...................................................................................................... 21 0 2 194.50 389 112 277
...............................................................CAAGGACGACTTGACTCGGT...................................................................................................... 20 0 2 74.00 148 110 38
............................................................TGACAAGGACGACTTGACTCGGT...................................................................................................... 23 1 2 66.00 132 116 16
.............................................................GACAAGGACGACTTGACTCGGT...................................................................................................... 22 0 2 62.00 124 77 47
............................................................AGACAAGGACGACTTGACTCGGT...................................................................................................... 23 1 2 11.00 22 18 4
................................................................AAGGACGACTTGACTCGGT...................................................................................................... 19 0 2 8.50 17 8 9
..............................................................ACAAGGACGACTTGACTCGGTA..................................................................................................... 22 1 2 8.50 17 1 16
..............................................................ACAAGGACGACTTGACTCGG....................................................................................................... 20 0 2 6.50 13 0 13
.............................................................GACAAGGACGACTTGA............................................................................................................ 16 0 3 5.33 16 16 0
...........................................................TTGACAAGGACGACTTGACTCGGT...................................................................................................... 24 2 2 5.00 10 6 4
...............................................................CAAGGACGACTTGACTCGG....................................................................................................... 19 0 2 4.50 9 3 6
.............................................................GACAAGGACGACTTGACTCGG....................................................................................................... 21 0 2 4.00 8 4 4
......................................................................................................TATAGTCGAGTCATCCGTGG............................................................... 20 0 1 4.00 4 4 0
...............................................................TAAGGACGACTTGACTCGGT...................................................................................................... 20 1 2 3.50 7 7 0
.............................................................GACAAGGACGACTTGACTCGGTA..................................................................................................... 23 1 2 3.50 7 1 6
.............................................................GACAAGGACGACTTGAC........................................................................................................... 17 0 3 3.33 10 10 0
.................................................................AGGACGACTTGACTCGGT...................................................................................................... 18 0 2 3.00 6 2 4
...........................................................TAGACAAGGACGACTTGACTCGGT...................................................................................................... 24 2 2 2.50 5 5 0
............................................................TGACAAGGACGACTTGACT.......................................................................................................... 19 1 3 2.33 7 7 0
...........................................................TTGACAAGGACGACTTGACTCG........................................................................................................ 22 2 2 2.00 4 4 0
............................................................TGACAAGGACGACTTGACTCGG....................................................................................................... 22 1 2 2.00 4 4 0
.............................................................GACAAGGACGACTTGACTCG........................................................................................................ 20 0 2 2.00 4 0 4
..................................................................................................TGACTATAGTCGAGTCATCCGTG................................................................ 23 0 1 2.00 2 2 0
................................................................TAGGACGACTTGACTCGGT...................................................................................................... 19 1 4 2.00 8 8 0
..........................................................TTTGACAAGGACGACTTGACTCGGT...................................................................................................... 25 3 2 2.00 4 3 1
...........................................................ATGACAAGGACGACTTGACTCGGT...................................................................................................... 24 1 2 1.50 3 0 3
..............................................................ACAAGGACGACTTGACTCGGTAA.................................................................................................... 23 1 2 1.50 3 0 3
...........................................................TGGACAAGGACGACTTGACTCG........................................................................................................ 22 1 2 1.50 3 2 1
..............................................................ACAAGGACGACTTGACTCGGA...................................................................................................... 21 1 2 1.50 3 3 0
.............................................................GACAATGACGACTTGACTCGGT...................................................................................................... 22 1 2 1.50 3 3 0
.............................................................CACAAGGACGACTTGACTCGGT...................................................................................................... 22 1 2 1.50 3 2 1
...............................................................CAAGGACGACTTGACTCGGTA..................................................................................................... 21 1 2 1.50 3 1 2
............................................................TGACAAGGACGACTTGAC........................................................................................................... 18 1 7 1.14 8 8 0
.............................................................GACAAGGACGACTTGACTC......................................................................................................... 19 0 2 1.00 2 2 0
..............................................................ACAAGGACGACTCGACTCGGT...................................................................................................... 21 1 2 1.00 2 0 2
...............................................................CAAGGACGACTTGACTCGGTAAGGC................................................................................................. 25 3 1 1.00 1 0 1
..............................................................ACAAGGACGACTTGACTAGGT...................................................................................................... 21 1 2 1.00 2 0 2
.............................................................GACAAGGACGACTTGACTCGGA...................................................................................................... 22 1 2 1.00 2 1 1
.............................................................GACAAGGACGACTTGACTCGGTAAGGC................................................................................................. 27 3 1 1.00 1 0 1
..................................................................................................TGACTATAGTCGAGTCATCCGT................................................................. 22 0 1 1.00 1 1 0
............................................................TGACAAGGACGACTTGACTCG........................................................................................................ 21 1 2 1.00 2 2 0
........................................................GAAATGACAAGGACGACTTGACTCGGT...................................................................................................... 27 3 1 1.00 1 0 1
........................................................................................................TAGTCGAGTCATCCGTG................................................................ 17 0 1 1.00 1 1 0
...............................................................CAAGGACGACTTGACTCGGTC..................................................................................................... 21 0 2 1.00 2 2 0
.................................................................................................ATGACTATAGTCGAGTCATCCGT................................................................. 23 1 1 1.00 1 1 0
...............................................................AAAGGACGACTTGACTCGGT...................................................................................................... 20 1 2 1.00 2 2 0
............................................................TGACAAGGACGACTTGA............................................................................................................ 17 1 20 0.85 17 17 0
............................................................TGACAATGACGACTTGACTCGGT...................................................................................................... 23 2 3 0.67 2 2 0
............................................................AAACAAGGACGACTTGACTCGGT...................................................................................................... 23 2 3 0.67 2 0 2
............................................................TGACAAGGACGACTTGACTCGGTA..................................................................................................... 24 2 3 0.67 2 2 0
..............................................................ACAAGGACGACTTGACTCGGTATC................................................................................................... 24 2 2 0.50 1 0 1
..............................................................ATAAGGACGACTTGACTCGGT...................................................................................................... 21 1 2 0.50 1 0 1
.............................................................GTCAAGGACGACTTGACTCGGT...................................................................................................... 22 1 2 0.50 1 1 0
..............................................................ACAAGGACGACTTGACTCGGC...................................................................................................... 21 1 2 0.50 1 0 1
..........................................................TATGACAAGAACGACTTGACTCGGT...................................................................................................... 25 3 2 0.50 1 1 0
................................................................TAGGACGACTTGACTCGGTC..................................................................................................... 20 1 2 0.50 1 1 0
.............................................................AACAAGGACGACTTGACTCGGT...................................................................................................... 22 1 2 0.50 1 1 0
.............................................................TTCAAGGACGACTTGACTCGGT...................................................................................................... 22 2 2 0.50 1 0 1
..............................................................ACAAGGATGACTTGACTCGGT...................................................................................................... 21 1 2 0.50 1 0 1
..............................................................ACAAGGACGACTTGACT.......................................................................................................... 17 0 4 0.50 2 2 0
..............................................................ACAAGGACTACTTGACTCGGT...................................................................................................... 21 1 2 0.50 1 1 0
..............................................................ACAAGGACGACTTGACTCGGTTTTA.................................................................................................. 25 3 2 0.50 1 0 1
.............................................................GATAAGGACGACTTGACTCGGT...................................................................................................... 22 1 2 0.50 1 1 0
...............................................................CAAGGACGACTTGACTCGCT...................................................................................................... 20 1 2 0.50 1 1 0
............................................................CGACAAGGACGACTTGACTCGGT...................................................................................................... 23 1 2 0.50 1 1 0
..............................................................ACAAGGACGACTGGACTCGGT...................................................................................................... 21 1 2 0.50 1 0 1
..............................................................ACAAGGACGACTTGACTCG........................................................................................................ 19 0 2 0.50 1 0 1
..............................................................ACAAGGACGACTTGACTCGGTCTCGT................................................................................................. 26 3 2 0.50 1 0 1
...........................................................CAGACAAGGACGACTTGACTCGGT...................................................................................................... 24 2 2 0.50 1 1 0
..............................................................TAAAGGACGACTTGACTCGGTCA.................................................................................................... 23 2 2 0.50 1 1 0
..............................................................CCAAGGACGACTTGACTCGGT...................................................................................................... 21 1 2 0.50 1 0 1
..............................................................ACAAGGAAGACTTGACTCGGT...................................................................................................... 21 1 2 0.50 1 1 0
...............................................................CAAGGACGACTTAACTCGGT...................................................................................................... 20 1 2 0.50 1 0 1
.................................................................AGGACGACTTGACTCGG....................................................................................................... 17 0 2 0.50 1 0 1
...............................................................CAAGGACGACTTGACTCGGTTG.................................................................................................... 22 2 2 0.50 1 0 1
............................................................TGACAAGGACGAATTGACTCGGT...................................................................................................... 23 2 2 0.50 1 1 0
...............................................................CAAGGATGACTTGACTCGGT...................................................................................................... 20 1 2 0.50 1 1 0
............................................................TGCCAAGGACGACTTGACTCGG....................................................................................................... 22 2 2 0.50 1 0 1
...........................................................TAGACAAGGATGACTTGACTCGGT...................................................................................................... 24 3 2 0.50 1 1 0
.............................................................GACAAGGACGACTTTACTCGGT...................................................................................................... 22 1 2 0.50 1 0 1
..............................................................GCAAGGACGACTTGACTCGGT...................................................................................................... 21 1 2 0.50 1 0 1
..............................................................ACAAGGGCGACTTGACTCGGTA..................................................................................................... 22 2 2 0.50 1 0 1
..............................................................ACAAGGCCGACTTGACTCGGT...................................................................................................... 21 1 2 0.50 1 1 0
............................................................TGACAAGGACGACTTGCCTCGGT...................................................................................................... 23 2 2 0.50 1 1 0
..............................................................ACAAGGACGACTTGACTCGGTAAGG.................................................................................................. 25 3 3 0.33 1 0 1
..............................................................CAAAGGACGACTTGACTCGGT...................................................................................................... 21 2 3 0.33 1 1 0
...............................................................CAAGGACGACCTGACTCGGT...................................................................................................... 20 1 3 0.33 1 0 1
..................................................................GGACGACTTGACTCGGTCA.................................................................................................... 19 0 3 0.33 1 1 0
..............................................................ACAAGGACGACCTGACTCGGTA..................................................................................................... 22 2 3 0.33 1 1 0
............................................................TGACAAGGACGACTTGACTC......................................................................................................... 20 1 3 0.33 1 1 0
...........................................................................................................................................CCGTCGGGCCTCTCGGCCCGAAGA...................... 24 3 7 0.29 2 2 0
............................................................TGACAAGGACGACTTG............................................................................................................. 16 1 20 0.25 5 5 0
...................................................................GACGACTTGACTCGGT...................................................................................................... 16 0 4 0.25 1 1 0
..............................................................ATAAGGACGACTTGACTCG........................................................................................................ 19 1 8 0.13 1 0 1
..............................................................ACAAGGACGACTTGAC........................................................................................................... 16 0 9 0.11 1 1 0
...............................................................CAAGGACGACTTGAC........................................................................................................... 15 0 15 0.07 1 1 0
.............................................................................................................................................................CCGAGCCGGCGCCGCGCGCCGCC..... 23 3 20 0.05 1 1 0
..............................................................ACAAGGACGACTTGA............................................................................................................ 15 0 20 0.05 1 1 0

Generated: 05/16/2015 at 12:27 AM