ID:

ocu-mir-29c

 Coordinate:

chr16:64850333-64850420 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.7 -34.3 -34.0

Sense Strand Reads

TCAGACTTGTCACCTGCGCACAGGTGCAGCCCTGGGAGCGCCACCGGCCCATCTCTTACACAGGCTGACCGATTTCTCCTGGTGTTCAGAGTCTGTTTTTGTCTAGCACCATTTGAAATCGGTTATGATGTAGGGGGAAAAGCAGCGACCTCCACGCCTCGTGCCACCGCCTGTGGTGTCCTGGAAGA
***************************************************(((((((((((...(((((((((((...(((((((.(((...........))))))))))...))))))))))))).))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528821
Adult_testes_Mili_IP		 GSM1528820
Adult_testes
.......................................................................................................TAGCACCATTTGAAATCGGT................................................................. 20 0 1 561.00 561 530 31
.......................................................................................................TAGCACCATTTGAAATCGGTT................................................................ 21 0 1 112.00 112 88 24
..................................................................GACCGATTTCTCCTGGTGTT...................................................................................................... 20 0 1 69.00 69 0 69
.......................................................................................................TAGCACCATTTGAAATCGGTTA............................................................... 22 0 1 65.00 65 10 55
.......................................................................................................TAGCACCATTTGAAATCGG.................................................................. 19 0 1 45.00 45 45 0
......................................................................................................ATAGCACCATTTGAAATCGGT................................................................. 21 1 1 36.00 36 36 0
........................................................................................................AGCACCATTTGAAATCGGT................................................................. 19 0 1 35.00 35 34 1
..................................................................GACCGATTTCTCCTGGT......................................................................................................... 17 0 2 31.00 62 0 62
..............................................................................................................ATTTGAAATCGGTTA............................................................... 15 0 2 22.50 45 0 45
.................................................................TGACCGATTTCTCCTGGTGTT...................................................................................................... 21 0 1 20.00 20 0 20
...........................................................................................................ACCATTTGAAATCGGTTA............................................................... 18 0 1 20.00 20 0 20
........................................................................................................AGCACCATTTGAAATCGGTT................................................................ 20 0 1 17.00 17 5 12
..................................................................GACCGATTTCTCCTGGTGT....................................................................................................... 19 0 1 15.00 15 0 15
...................................................................ACCGATTTCTCCTGGTGTT...................................................................................................... 19 0 1 14.00 14 0 14
.......................................................................................................TAGCACCATTTGAAATCGGTTT............................................................... 22 1 1 14.00 14 0 14
...........................................................................................................ACCATTTGAAATCGGTT................................................................ 17 0 1 11.00 11 0 11
...................................................................ACCGATTTCTCCTGGTGTTCAGT.................................................................................................. 23 1 1 9.00 9 0 9
..................................................................GACCGATTTCTCCTGGTGTTT..................................................................................................... 21 1 1 9.00 9 0 9
...........................................................................................................ACCATTTGAAATCGGT................................................................. 16 0 1 8.00 8 3 5
.............................................................................................................CATTTGAAATCGGTTA............................................................... 16 0 2 8.00 16 0 16
......................................................................................................ATAGCACCATTTGAAATCGGTT................................................................ 22 1 1 8.00 8 8 0
.......................................................................................................TAGCACCATTTGAAATCGGTTAT.............................................................. 23 0 1 6.00 6 0 6
..................................................................GACCGATTTCTCCTGGTGTTC..................................................................................................... 21 0 1 6.00 6 0 6
............................................................................................................CCATTTGAAATCGGTTA............................................................... 17 0 1 6.00 6 0 6
........................................................................................................AGCACCATTTGAAATCGG.................................................................. 18 0 1 6.00 6 6 0
.........................................................................................................GCACCATTTGAAATCGGTTA............................................................... 20 0 1 6.00 6 6 0
..........................................................................................................CACCATTTGAAATCGGT................................................................. 17 0 1 5.00 5 5 0
.........................................................................................................GCACCATTTGAAATCGGT................................................................. 18 0 1 5.00 5 1 4
.................................................................TGACCGATTTCTCCTGGT......................................................................................................... 18 0 1 4.00 4 0 4
......................................................................................................ATAGCACCATTTGAAATCGGTTA............................................................... 23 1 1 4.00 4 0 4
.......................................................................................................TAGCACCATTTGAAATCGGTTAA.............................................................. 23 1 1 3.00 3 0 3
...................................................................ACCGATTTCTCCTGGTGTTT..................................................................................................... 20 1 1 3.00 3 0 3
........................................................................................................AGCACCATTTGAAATCGGTTA............................................................... 21 0 1 3.00 3 2 1
..............................................................................................................ATTTGAAATCGGTTAT.............................................................. 16 0 1 3.00 3 0 3
.......................................................................................................TAGCACCATTTGAAATCG................................................................... 18 0 1 3.00 3 3 0
.....................................................................................................AATAGCACCATTTGAAATCGGT................................................................. 22 2 1 3.00 3 3 0
...................................................................ACCGATTTCTCCTGGTGTTC..................................................................................................... 20 0 1 2.00 2 0 2
.......................................................................................................TATCACCATTTGAAATCGGTT................................................................ 21 1 1 2.00 2 0 2
...................................................................................................TGGATAGCACCATTTGAAATCGGTTA............................................................... 26 2 1 2.00 2 0 2
............................................................................................................CCATTTGAAATCGGTT................................................................ 16 0 1 2.00 2 1 1
........................................................................................................AGCACCATTTGAAATCGGTTATCGTA.......................................................... 26 3 1 2.00 2 2 0
.................................................................TGACCGATTTCTCCTGGTGTTCAGAGTCTGT............................................................................................ 31 0 1 2.00 2 0 2
............................................................................................................CCATTTGAAATCGGT................................................................. 15 0 1 2.00 2 2 0
.........................................................................................................GCACCATTTGAAATCGG.................................................................. 17 0 1 2.00 2 1 1
...................................................................ACCGATTTCTCCTGGTGT....................................................................................................... 18 0 1 2.00 2 0 2
.......................................................................................................TAGCACCATTTGAAATCGGTTTT.............................................................. 23 1 1 2.00 2 0 2
...................................................................ACCGATTTCTCCTGGTGTTCA.................................................................................................... 21 0 1 2.00 2 2 0
...................................................................................................GGAATAGCACCATTTGAAATCGGT................................................................. 24 3 1 2.00 2 2 0
.......................................................................................................AAGCACCATTTGAAATCGGT................................................................. 20 1 1 2.00 2 2 0
.......................................................................................................TAGCACCATTTGAAATCGGTAA............................................................... 22 1 1 2.00 2 1 1
.................................................................TGACCGATTTCTCCTGGTG........................................................................................................ 19 0 1 2.00 2 2 0
...................................................................ACCGATTTCTCCTGGT......................................................................................................... 16 0 2 1.50 3 0 3
.................................................................TGACCGATTTCTCCTGGTGC....................................................................................................... 20 1 1 1.00 1 0 1
.......................................................................................................TAGCACCATTTGAAAT..................................................................... 16 0 4 1.00 4 0 4
.......................................................................................................TAGCACCATTTGAAAACGGT................................................................. 20 1 1 1.00 1 1 0
.......................................................................................................TAGCACCATTTGAAATCGGTC................................................................ 21 1 1 1.00 1 0 1
....................................................................................................GTTTAGCACCATTTGAAATCGGT................................................................. 23 1 1 1.00 1 1 0
.....................................................................................................ACTAGCACCATTTGAAATCGGTT................................................................ 23 1 1 1.00 1 1 0
...........................................................................................................ACCATTTGAAATCGGTTAT.............................................................. 19 0 1 1.00 1 0 1
......................................................................................................CTAGCACCATTTGAAATCGGT................................................................. 21 0 1 1.00 1 1 0
.........................................................................................................GCACCATTTGAAATCGGTT................................................................ 19 0 1 1.00 1 1 0
..................................................................GAGCGATTTCTCCTGGTGTTT..................................................................................................... 21 2 1 1.00 1 0 1
..................................................................................................TTGCGTAGCACCATTTGAAATCGGT................................................................. 25 2 1 1.00 1 1 0
.................................................................CGACCGATTTCTCCTGGTGTT...................................................................................................... 21 1 1 1.00 1 0 1
.................................................................TGACCGATTTCTCCTGGTGTTAA.................................................................................................... 23 1 1 1.00 1 1 0
..................................................................GACCGATTTCTCCTGGTGTTA..................................................................................................... 21 1 1 1.00 1 0 1
......................................................................................................ATAGCACCATTTGAAATCGG.................................................................. 20 1 1 1.00 1 1 0
.......................................................................................................TAGAACCATTTGAAATCGGT................................................................. 20 1 1 1.00 1 1 0
.......................................................................................................TAGCACCATTTGAAATTGGT................................................................. 20 1 1 1.00 1 1 0
.......................................................................................................TAGCACCATTTGAAATC.................................................................... 17 0 3 1.00 3 1 2
.................................................................TGACCGATTTCTCCTGGCGTT...................................................................................................... 21 1 1 1.00 1 0 1
.........................................................................................................GCACCATTTGAAATCGGTTAGT............................................................. 22 2 1 1.00 1 0 1
.......................................................................................................TAGCACCATTTGAAATCGGTTTA.............................................................. 23 2 1 1.00 1 1 0
.........................................................................................................GCACAATTTGAAATCGGT................................................................. 18 1 1 1.00 1 0 1
.......................................................................................................TAGCACCATTTGAAATCGGG................................................................. 20 1 1 1.00 1 1 0
............................................................................................................CCATTTGAAATCGGTTAT.............................................................. 18 0 1 1.00 1 0 1
.........................................................................................................GCACCATTTGAAATCGGTTAT.............................................................. 21 0 1 1.00 1 0 1
.....................................................................................................GCTAGCACCATTTGAAATCGG.................................................................. 21 1 1 1.00 1 1 0
.........................................................................................................GCACCATTTGAAATCG................................................................... 16 0 1 1.00 1 0 1
..................................................................................................CTCCCTAGCACCATTTGAAATCGGTTAT.............................................................. 28 3 1 1.00 1 1 0
.................................................................TGACCGATTTCTCCTGGTGTTCT.................................................................................................... 23 1 1 1.00 1 0 1
..................................................................................................TTGCGTAGCACCATCTGAAATCGG.................................................................. 24 3 2 1.00 2 2 0
.......................................................................................................TGGCACCATTTGAAATCGGT................................................................. 20 1 1 1.00 1 1 0
.............................................................................................................CATTTGAAATCGGTTAT.............................................................. 17 0 1 1.00 1 0 1
..................................................................................................TGGTGTAGCACCATCTGAAATCGGT................................................................. 25 3 2 1.00 2 2 0
..........................................................................................................CACCATTTGAAATCGG.................................................................. 16 0 1 1.00 1 1 0
..................................................................................................TTCCATAGCACCATTTGAAATCGGT................................................................. 25 3 1 1.00 1 1 0
.......................................................................................................TAGCACCATTTGAAATCGGTTACT............................................................. 24 2 1 1.00 1 1 0
...................................................................................................TTTTTAGCACCATTTGAAATCGGT................................................................. 24 2 2 0.50 1 1 0
....................................................................................................AATTAGCACCATTTGAAATCGGT................................................................. 23 3 2 0.50 1 1 0
.......................................................................................................TAGCACCATCTGAAATCGGTTACGG............................................................ 25 3 2 0.50 1 1 0
..................................................................................................CTGCCTAGCACCATCTGAAATCGGT................................................................. 25 3 2 0.50 1 1 0
...................................................................ACCGATTTCTCCTGGTG........................................................................................................ 17 0 2 0.50 1 0 1
.................................................................AGACCGATTTCTCCTGGTGT....................................................................................................... 20 1 2 0.50 1 1 0
.......................................................................................................TAGCACCATCTGAAATCGGTTATG............................................................. 24 1 2 0.50 1 1 0
......................................................................................................ATAGCACCATATGAAATCGGTT................................................................ 22 2 2 0.50 1 1 0
...................................................................................................TGAATAGCACCATCTGAAATCGGT................................................................. 24 3 2 0.50 1 1 0
....................................................................................................TGGTAGCACCATTTGAAATCGGTT................................................................ 24 3 2 0.50 1 0 1
........................................................................................................TGCACCATTTGAAATCGGT................................................................. 19 1 2 0.50 1 0 1
...................................................................ACCGCTTTCTCCTGGTGTTCAGT.................................................................................................. 23 2 2 0.50 1 0 1
...........................................................................................................ACCATTTGAAATCGGTTT............................................................... 18 1 4 0.50 2 0 2
...................................................................ACCGATTTCTCCTGGGGTT...................................................................................................... 19 1 2 0.50 1 0 1
....................................................................................................GAATAGCACCATCTGAAATCGGT................................................................. 23 3 3 0.33 1 1 0
..................................................................GACCGATTTCTCCTG........................................................................................................... 15 0 3 0.33 1 0 1
....................................................................................................AGTTAGCACCATTTGAAATCGGT................................................................. 23 3 3 0.33 1 1 0
.............................................................................................................CATTTGAAATCGGTT................................................................ 15 0 4 0.25 1 0 1
...................................................................................................GGTTTAGCACCATTTGAAATC.................................................................... 21 2 4 0.25 1 0 1
............................................................................................................CCATTTGAAATCGGTTT............................................................... 17 1 12 0.08 1 0 1
.......................................................................................................TAGCACCATTTGAAA...................................................................... 15 0 20 0.05 1 0 1

Anti-sense strand reads

AGTCTGAACAGTGGACGCGTGTCCACGTCGGGACCCTCGCGGTGGCCGGGTAGAGAATGTGTCCGACTGGCTAAAGAGGACCACAAGTCTCAGACAAAAACAGATCGTGGTAAACTTTAGCCAATACTACATCCCCCTTTTCGTCGCTGGAGGTGCGGAGCACGGTGGCGGACACCACAGGACCTTCT
**************************************************(((((((((((...(((((((((((...(((((((.(((...........))))))))))...))))))))))))).))))))))).*************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
.....................................................................................AGTCTCAGACAAAAA........................................................................................ 15 0 20 0.25 5 3 2

Generated: 05/16/2015 at 12:36 AM