ID:

ocu-mir-29a

 Coordinate:

chr7:9515477-9515564 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-33.4 -32.7

Sense Strand Reads

GTTCAAGGACCAAGTGCGCGAAGGACCTCCAGCCCTCGCGTCCTCCCGTGACCCCTTAGAGGATGACTGATTTCTTTTGGTGTTCAGAGTCAATAGAATTTTCTAGCACCATCTGAAATCGGTTATAATGATCGGGGAAGAGCATCATGCTGCTGACGGCTGAGAGAAGACGCACAGCTGAGCTTTGG
**************************************************.((((.......((((((((((((...(((((((.((((...........)))))))))))...)))))))))))).......)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528821
Adult_testes_Mili_IP		 GSM1528820
Adult_testes
.......................................................................................................TAGCACCATCTGAAATCGGT................................................................. 20 0 1 706.00 706 675 31
.......................................................................................................TAGCACCATCTGAAATCGGTT................................................................ 21 0 1 187.00 187 131 56
.......................................................................................................TAGCACCATCTGAAATCGGTTA............................................................... 22 0 1 145.00 145 20 125
.......................................................................................................TAGCACCATCTGAAATCGG.................................................................. 19 0 1 99.00 99 92 7
.................................................................ACTGATTTCTTTTGGTGTTCAGT.................................................................................................... 23 1 1 77.00 77 0 77
......................................................................................................ATAGCACCATCTGAAATCGGT................................................................. 21 1 1 44.00 44 44 0
...........................................................................................................ACCATCTGAAATCGGTTA............................................................... 18 0 1 44.00 44 0 44
........................................................................................................AGCACCATCTGAAATCGGT................................................................. 19 0 1 36.00 36 36 0
.................................................................ACTGATTTCTTTTGGTGTTCAG..................................................................................................... 22 0 1 30.00 30 5 25
......................................................................................................CTAGCACCATCTGAAATCGGT................................................................. 21 0 1 30.00 30 22 8
.................................................................ACTGATTTCTTTTGGTGTTCA...................................................................................................... 21 0 1 27.00 27 27 0
..........................................................................................................CACCATCTGAAATCGGTTA............................................................... 19 0 1 23.00 23 0 23
......................................................................................................CTAGCACCATCTGAAATCGG.................................................................. 20 0 1 22.00 22 21 1
.................................................................ACTGATTTCTTTTGGTGTTCAGA.................................................................................................... 23 0 1 21.00 21 7 14
......................................................................................................CTAGCACCATCTGAAATCGGTT................................................................ 22 0 1 17.00 17 8 9
........................................................................................................AGCACCATCTGAAATCGGTT................................................................ 20 0 1 15.00 15 6 9
...........................................................................................................ACCATCTGAAATCGGTT................................................................ 17 0 1 12.00 12 0 12
.......................................................................................................TAGCACCATCTGAAATCGGTTAT.............................................................. 23 0 1 12.00 12 0 12
......................................................................................................ATAGCACCATCTGAAATCGGTT................................................................ 22 1 1 11.00 11 6 5
.......................................................................................................TAGCACCATCTGAAATCGGTTAA.............................................................. 23 1 1 11.00 11 6 5
.........................................................................................................GCACCATCTGAAATCGGT................................................................. 18 0 1 10.00 10 7 3
.......................................................................................................TAGCACCATCTGAAATCG................................................................... 18 0 1 9.00 9 8 1
.................................................................ACTGATTTCTTTTGGTGTTC....................................................................................................... 20 0 1 9.00 9 2 7
.......................................................................................................TAGCACCATCTGAAATCGGTTT............................................................... 22 1 1 8.00 8 0 8
.................................................................ACTGATTTCTTTTGGTGTT........................................................................................................ 19 0 1 7.00 7 2 5
..........................................................................................................CACCATCTGAAATCGGTT................................................................ 18 0 1 6.00 6 0 6
..........................................................................................................CACCATCTGAAATCGGTTAT.............................................................. 20 0 1 5.00 5 0 5
........................................................................................................AGCACCATCTGAAATCGGTTA............................................................... 21 0 1 5.00 5 0 5
.........................................................................................................GCACCATCTGAAATCGGTTA............................................................... 20 0 1 5.00 5 0 5
........................................................................................................AGCACCATCTGAAATCGGTTATCGTA.......................................................... 26 3 1 5.00 5 5 0
..........................................................................................................CACCATCTGAAATCGGT................................................................. 17 0 1 5.00 5 3 2
.................................................................ACTGATTTCTTTTGGTGTTCAGAT................................................................................................... 24 1 1 4.00 4 0 4
.....................................................................................................ACTAGCACCATCTGAAATCGGTTG............................................................... 24 2 1 4.00 4 0 4
.................................................................ACTGATTTCTTTTGGTGTTCAGAG................................................................................................... 24 0 1 4.00 4 0 4
......................................................................................................ATAGCACCATCTGAAATCGGTTA............................................................... 23 1 1 4.00 4 0 4
......................................................................................................ATAGCACCATCTGAAATCGG.................................................................. 20 1 1 4.00 4 4 0
.......................................................................................................TAGCACCATCTGAAATCGGG................................................................. 20 1 1 4.00 4 4 0
...........................................................................................................ACCATCTGAAATCGGTTT............................................................... 18 1 2 3.50 7 0 7
.................................................................ACTGATTTCTTTTGGTGT......................................................................................................... 18 0 3 3.33 10 0 10
...........................................................................................................ACCATCTGAAATCGGTTAT.............................................................. 19 0 1 3.00 3 0 3
......................................................................................................CTAGCACCATCTGAAATCGGTTT............................................................... 23 1 1 3.00 3 0 3
.........................................................................................................ACACCATCTGAAATCGGTTAT.............................................................. 21 1 1 3.00 3 0 3
.................................................................ACTGCTTTCTTTTGGTGTTCAGA.................................................................................................... 23 1 1 2.00 2 1 1
.................................................................ACTGATTTCTTTTGGTGTTCAGAGT.................................................................................................. 25 0 1 2.00 2 0 2
.......................................................................................................TAGCACCATCTGAAATCGGCT................................................................ 21 1 1 2.00 2 2 0
.....................................................................................................GATAGCACCATCTGAAATCGGT................................................................. 22 2 1 2.00 2 2 0
.......................................................................................................TAGCACCATCTGAAATCGGTAT............................................................... 22 2 1 2.00 2 0 2
............................................................................................................CCATCTGAAATCGGTTA............................................................... 17 0 1 2.00 2 0 2
.......................................................................................................TAGCACCATCTGAAATC.................................................................... 17 0 1 2.00 2 2 0
...........................................................................................................ACCATCTGAAATCGGT................................................................. 16 0 1 2.00 2 1 1
........................................................................................................AGCACCATCTGAAATCGG.................................................................. 18 0 1 2.00 2 2 0
............................................................................................................CCATCTGAAATCGGTTAT.............................................................. 18 0 1 2.00 2 0 2
.............................................................................................................CATCTGAAATCGGTTA............................................................... 16 0 1 2.00 2 0 2
.......................................................................................................CAGCACCATCTGAAATCGGTT................................................................ 21 1 1 2.00 2 1 1
.................................................................ACTGATTTCTTTTGGTGTTCAGAGTC................................................................................................. 26 0 1 2.00 2 0 2
.......................................................................................................TAGCACCCTCTGAAATCGGT................................................................. 20 1 1 2.00 2 2 0
.........................................................................................................GCACCATCTGAAATCGG.................................................................. 17 0 1 2.00 2 1 1
............................................................................................................CCATCTGAAATCGGTT................................................................ 16 0 2 1.50 3 0 3
.................................................................................................ATTTTTTAGCACCATCTGAAATCGGT................................................................. 26 1 1 1.00 1 1 0
......................................................................................................CTACCACCATCTGAAATCGGTT................................................................ 22 1 1 1.00 1 1 0
..................................................................................................GTTACTAGCACCATCTGAAATCG................................................................... 23 2 1 1.00 1 1 0
.......................................................................................................TAGCACCGTCTGAAATCGG.................................................................. 19 1 1 1.00 1 1 0
...................................................................TGATTTCTTTTGGTGTTCAG..................................................................................................... 20 0 1 1.00 1 0 1
.......................................................................................................TAGCCCCATCTGAAATCGG.................................................................. 19 1 1 1.00 1 1 0
.......................................................................................................TAGCACAATCTGAAATCGGT................................................................. 20 1 1 1.00 1 1 0
..................................................................................................CTTGTTAGCACCATCTGAAATCGGT................................................................. 25 3 1 1.00 1 1 0
.......................................................................................................TAGCACCCTCTGAAATCGGTTA............................................................... 22 1 1 1.00 1 0 1
.......................................................................................................TAGCACCATCCGAAATCGGT................................................................. 20 1 1 1.00 1 1 0
..........................................................................................................CACCATCTGAAATCGGTTT............................................................... 19 1 1 1.00 1 0 1
..............................................................................................................ATCTGAAATCGGTTAT.............................................................. 16 0 1 1.00 1 0 1
.......................................................................TTCTTTTGGTGTTCAGAG................................................................................................... 18 0 1 1.00 1 0 1
.......................................................................................................TAGCACCGTCTGAAATCGGT................................................................. 20 1 1 1.00 1 1 0
...................................................................................................GCCCTAGCACCATCTGAAATCGGT................................................................. 24 3 1 1.00 1 1 0
.......................................................................................................TAGCACCAGCTGAAATCGGTT................................................................ 21 1 1 1.00 1 0 1
.................................................................ACTGATATCTTTTGGTGTT........................................................................................................ 19 1 1 1.00 1 1 0
................................................................................................GATCTTATAGCACCATCTGAAATCGG.................................................................. 26 3 1 1.00 1 1 0
........................................................................................................AACACCATCTGAAATCGGTT................................................................ 20 1 1 1.00 1 0 1
..................................................................................................TGGTGTAGCACCATCTGAAATCGGT................................................................. 25 3 2 1.00 2 2 0
......................................................................................................CTAGCACCATCTGAAATCGGTTG............................................................... 23 1 1 1.00 1 0 1
........................................................................................................AGCACCATCGGAAATCGG.................................................................. 18 1 1 1.00 1 1 0
.......................................................................................................TAGCACCATCTGAAATCGGTTAGCC............................................................ 25 3 1 1.00 1 1 0
..................................................................................................ATACCTAGCACCATCTGAAATCGGT................................................................. 25 3 1 1.00 1 1 0
.....................................................................................................ACTAGCACCATCTGAAATCGG.................................................................. 21 1 1 1.00 1 1 0
.......................................................................................................CAGCACCATCTGAAATCGGT................................................................. 20 1 1 1.00 1 1 0
.......................................................................................................AAGCACCATCTGAAATCGGT................................................................. 20 1 1 1.00 1 0 1
.......................................................................................................TATCACCATCTGAAATCGGTTT............................................................... 22 2 1 1.00 1 0 1
....................................................................................................AAATAGCACCATCTGAAATCGGTTA............................................................... 25 3 1 1.00 1 0 1
...........................................................................................................ACCATCTGAAATCGGTTC............................................................... 18 1 2 1.00 2 0 2
.......................................................................................................TCGCACCATCTGAAATCGGTT................................................................ 21 1 1 1.00 1 1 0
.........................................................................................................GCACCATCTGAAATCG................................................................... 16 0 1 1.00 1 0 1
.......................................................................................................TAGCACCATCTGAAATCGGA................................................................. 20 1 1 1.00 1 1 0
......................................................................................................CTAGCACCATCTGAAATCGGTTA............................................................... 23 0 1 1.00 1 1 0
.......................................................................................................TTGCACCATCTGAAATCGGT................................................................. 20 1 1 1.00 1 1 0
.......................................................................................................TAGCACCATCTGAAATCGGGT................................................................ 21 1 1 1.00 1 1 0
..................................................................................................TGCCCTAGCACCATCTGAAATCGGT................................................................. 25 3 1 1.00 1 1 0
......................................................................................................ATAGCACCATCTGAAATCGGTTAT.............................................................. 24 1 1 1.00 1 0 1
..................................................................................................TTGCGTAGCACCATCTGAAATCGG.................................................................. 24 3 2 1.00 2 2 0
.....................................................................................................GTTAGCACCATCTGAAATCGGT................................................................. 22 2 1 1.00 1 1 0
.................................................................ACTGATTTCTTTTGGTGGTCAGT.................................................................................................... 23 2 1 1.00 1 0 1
..........................................................................................................TACCATCTGAAATCGGTTA............................................................... 19 1 1 1.00 1 0 1
.......................................................................................................TAGCACCATCTTAAATCGGT................................................................. 20 1 1 1.00 1 1 0
......................................................................................................CTAGCACCATCTGAACTCGGT................................................................. 21 1 1 1.00 1 1 0
...........................................................................................................ACCATCTGACATCGGTTA............................................................... 18 1 1 1.00 1 0 1
......................................................................................................CTAGCACCATCTGAAATCG................................................................... 19 0 1 1.00 1 1 0
.................................................................ACTGATTTCTTTTGGTGTTCAGAGTTCGTA............................................................................................. 30 3 1 1.00 1 1 0
.......................................................................................................TAGCACCATCTGAAATCGC.................................................................. 19 1 1 1.00 1 1 0
.................................................................ACTGATTTCTTTTGGGGTTCAG..................................................................................................... 22 1 1 1.00 1 0 1
.................................................................ACTGATTTCTTTTGGTG.......................................................................................................... 17 0 3 0.67 2 1 1
...................................................................................................TTTTTAGCACCATTTGAAATCGGT................................................................. 24 2 2 0.50 1 1 0
.................................................................ACTGCTTTCTTTTGGTGTTCAG..................................................................................................... 22 1 2 0.50 1 0 1
............................................................................................................CCATCTGAAATCGGT................................................................. 15 0 2 0.50 1 1 0
.........................................................................CTTTTGGTGTTCAGAG................................................................................................... 16 0 2 0.50 1 0 1
.......................................................................................................TAGCACCATCTTAAATCGGTTT............................................................... 22 2 2 0.50 1 0 1
.....................................................................................................AATAGCACCATCTGAAATCGG.................................................................. 21 2 2 0.50 1 1 0
.......................................................................................................TAGCACCATCTGAAATCCGT................................................................. 20 1 2 0.50 1 1 0
.................................................................ACTGATTTCTTTTGGGGTTC....................................................................................................... 20 1 2 0.50 1 0 1
.......................................................................................................TAGCACCATCTGAAATCGGTTACGG............................................................ 25 3 2 0.50 1 1 0
.......................................................................................................TAGCACCATCTGAAATTGGT................................................................. 20 1 2 0.50 1 0 1
......................................................................................................ATAGCACCATATGAAATCGGTT................................................................ 22 2 2 0.50 1 1 0
..................................................................................................CTGCCTAGCACCATCTGAAATCGGT................................................................. 25 3 2 0.50 1 1 0
....................................................................................................TGGTAGCACCATTTGAAATCGGTT................................................................ 24 3 2 0.50 1 0 1
.......................................................................................................TAGCACCATCTGAAATCGGTTATG............................................................. 24 1 2 0.50 1 1 0
...................................................................................................TGAATAGCACCATCTGAAATCGGT................................................................. 24 3 2 0.50 1 1 0
...........................................................................................................ACCATCTGAAATCGGTTTT.............................................................. 19 1 2 0.50 1 0 1
............................................................................................................ACATCTGAAATCGGTTA............................................................... 17 1 5 0.40 2 0 2
....................................................................................................GAATAGCACCATCTGAAATCGGT................................................................. 23 3 3 0.33 1 1 0
.............................................................................................................CATCTGAAATCGGTT................................................................ 15 0 3 0.33 1 1 0
..................................................................CTGATTTCTTTTGGTGTT........................................................................................................ 18 0 3 0.33 1 0 1
.................................................................ACTGCTTTCTTTTGGTGTTCAGT.................................................................................................... 23 2 4 0.25 1 0 1
.................................................................ACTGATTTCTTTTGGTGTTCT...................................................................................................... 21 1 4 0.25 1 0 1
.................................................................ACTGATTTCTTCTGGTGTTCA...................................................................................................... 21 1 4 0.25 1 0 1

Anti-sense strand reads

CAAGTTCCTGGTTCACGCGCTTCCTGGAGGTCGGGAGCGCAGGAGGGCACTGGGGAATCTCCTACTGACTAAAGAAAACCACAAGTCTCAGTTATCTTAAAAGATCGTGGTAGACTTTAGCCAATATTACTAGCCCCTTCTCGTAGTACGACGACTGCCGACTCTCTTCTGCGTGTCGACTCGAAACC
**************************************************.((((.......((((((((((((...(((((((.((((...........)))))))))))...)))))))))))).......)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:47 AM