ID:

ocu-mir-292a

Coordinate:

chrUn0226:216429-216508 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-54.6 -54.4 -54.3

Sense Strand Reads

CCAGGCGCAACCGTCAGCTTCCAGAAGCTTCCCCGGCAGGACCCCATCCTCTGCCTGCGGGACTCAAACCGTGGGGGCACTTTCTGGCGTCTGGAGTAGAGTGCCGCCAGGGTTTGAGTGTTGCCGGTGGGGAAGGCCGACGGGGGGCGACCCAGCGCACGATGCGCACACCTTCCCGGC
**********************************************(((.(((((.((((.(((((((((.(((.((((((((((((...)))))...))))))).))).))))))))).)))).))))))))...********************************************
Read size # Mismatch Hit Count Total Norm Total GSM1528821
Adult_testes_Mili_IP
GSM1528820
Adult_testes
.............................................................ACTCAAACCGTGGGGGCACTTT................................................................................................. 22 0 1 581.00 581 429 152
...................................................................................................AGTGCCGCCAGGGTTTGAGTGT........................................................... 22 0 1 415.00 415 11 404
.............................................................ACTCAAACCGTGGGGGCACTT.................................................................................................. 21 0 1 162.00 162 133 29
.............................................................ACTCAAACCGTGGGGGCACT................................................................................................... 20 0 1 116.00 116 104 12
.............................................................ACTCAAACCGTGGGGGCACTTTT................................................................................................ 23 1 1 111.00 111 68 43
...................................................................................................AGTGCCGCCAGGGTTTGAGT............................................................. 20 0 1 109.00 109 43 66
.............................................................ACTCAAACCGTGGGGGCACTTTA................................................................................................ 23 1 1 52.00 52 51 1
...................................................................................................AGTGCCGCCAGGGTTTGAGTG............................................................ 21 0 1 43.00 43 12 31
...................................................................................................AGTGCCGCCAGGGTTTGAGTGC........................................................... 22 1 1 41.00 41 3 38
.............................................................ACTCAAACCGTGGGGGCACTTA................................................................................................. 22 1 1 28.00 28 28 0
............................................................AACTCAAACCGTGGGGGCACTTT................................................................................................. 23 1 1 21.00 21 18 3
....................................................................................................GTGCCGCCAGGGTTTGAGTGT........................................................... 21 0 1 19.00 19 0 19
...................................................................................................AGTGCCGCCAGGGTTTGAG.............................................................. 19 0 1 18.00 18 1 17
.............................................................ACTCAAACCGTGGGGGCACTTTTT............................................................................................... 24 1 1 18.00 18 9 9
.............................................................ACTCAAACCGTGGGGGCACTTTAT............................................................................................... 24 1 1 16.00 16 8 8
.............................................................ACTCAAACCGTGGGGGCAC.................................................................................................... 19 0 1 10.00 10 7 3
...................................................................................................AGTGCCGCCAGGGTTTGAGTGTT.......................................................... 23 0 1 9.00 9 1 8
.............................................................ACTCAAACCGTGGGGGCACTTAA................................................................................................ 23 2 1 8.00 8 8 0
...................................................................................................AGTGCCGCCAGGGTTTGAGTGCT.......................................................... 23 1 1 8.00 8 1 7
.............................................................ACTCAAACCGTGGGGGCACTAT................................................................................................. 22 1 1 8.00 8 8 0
.............................................................ACTCAAACCGTGGGGGCAT.................................................................................................... 19 1 1 7.00 7 0 7
..................................................................................................AAGTGCCGCCAGGGTTTGAGT............................................................. 21 1 1 7.00 7 7 0
.....................................................................................................TGCCGCCAGGGTTTGAGTGTTT......................................................... 22 1 1 6.00 6 0 6
.............................................................ACTCAAACCGTGGGGGCACTTTAA............................................................................................... 24 2 1 6.00 6 6 0
......................................................................................................GCCGCCAGGGTTTGAGTGT........................................................... 19 0 1 6.00 6 0 6
.............................................................ACTCAAACCGTGGGGGCACTTAT................................................................................................ 23 2 1 6.00 6 3 3
.............................................................ACTCAAACCGTGGGGGCA..................................................................................................... 18 0 1 6.00 6 4 2
...................................................................................................AGTGCCGCCAGGGTTTGAGTGCC.......................................................... 23 2 1 6.00 6 0 6
.................................................................AAACCGTGGGGGCACTTT................................................................................................. 18 0 1 5.00 5 0 5
....................................................................................................GTGCCGCCAGGGTTTGAGT............................................................. 19 0 1 5.00 5 1 4
.............................................................ACTCAAACCGTGGGGGCACTTC................................................................................................. 22 1 1 5.00 5 4 1
.............................................................ACTCAAACCGTGGGGGCACTTAAA............................................................................................... 24 3 1 5.00 5 5 0
...................................................................................................AGTGCCGCCAGGGTTTGAGTGTTA......................................................... 24 1 1 4.00 4 4 0
.............................................................ACTCAAACCGTGGGGGC...................................................................................................... 17 0 1 4.00 4 4 0
............................................................AACTCAAACCGTGGGGGCACTTTT................................................................................................ 24 2 1 4.00 4 4 0
.............................................................ACTCAAACCGTGGGGGCACTTTTTT.............................................................................................. 25 2 1 4.00 4 4 0
.............................................................ACTCAAACCGCGGGGGCACTTT................................................................................................. 22 1 1 4.00 4 3 1
.............................................................ACTCAAACCGTGGGGGCACTAA................................................................................................. 22 2 1 4.00 4 4 0
....................................................................................................GTGCCGCCAGGGTTTGAG.............................................................. 18 0 2 3.50 7 0 7
.............................................................ACTCAAACCGTGGGGGCACTTTTA............................................................................................... 24 2 1 3.00 3 3 0
.................................................................................................AAAGTGCCGCCAGGTTTTGAGT............................................................. 22 2 1 3.00 3 0 3
................................................................CAAACCGTGGGGGCACTTT................................................................................................. 19 0 1 3.00 3 1 2
..............................................................CTCAAACCGTGGGGGCACT................................................................................................... 19 0 1 3.00 3 3 0
.............................................................ACTCAAACCGTGGGGGCACTATA................................................................................................ 23 2 1 3.00 3 3 0
...................................................................................................AGTGCCGCCAGGGCTTGAGTGT........................................................... 22 1 1 3.00 3 0 3
...................................................................................................AGTGCCGCCAGGGTTTGA............................................................... 18 0 1 3.00 3 1 2
.............................................................ACTCAAACCGTGGGGGCACTTTTAT.............................................................................................. 25 3 1 3.00 3 3 0
.............................................................ACTCAAACCGTGGGGGCACA................................................................................................... 20 1 1 3.00 3 0 3
.............................................................ACTCAAACCGTGGGGGCACTTCTT............................................................................................... 24 2 1 3.00 3 0 3
...................................................................................................AGTGCCGCCAGGGTTTGAGTGTTT......................................................... 24 1 1 3.00 3 0 3
.............................................................ACTCAAACCGTGGGGGCATTT.................................................................................................. 21 1 1 3.00 3 0 3
............................................................AACTCAAACCGTGGGGGCACTT.................................................................................................. 22 1 1 3.00 3 3 0
.............................................................ACTCAAACCGTGGGGGCACTTCT................................................................................................ 23 2 1 2.00 2 2 0
.............................................................ACTCAAGCCGTGGGGGCACTTTT................................................................................................ 23 2 1 2.00 2 0 2
............................................................AACTCAAACCGTGGGGGCACT................................................................................................... 21 1 1 2.00 2 0 2
.............................................................ACTCAAACCGTGGGGGCACAT.................................................................................................. 21 1 1 2.00 2 2 0
..............................................................CTCAAACCGTGGGGGCACTTT................................................................................................. 21 0 1 2.00 2 1 1
....................................................CCCCGCCGGACTCAAACCGTGGGGGCACTTT................................................................................................. 31 3 1 2.00 2 0 2
.....................................................................................................TGCCGCCAGGGTTTGAGTGT........................................................... 20 0 1 2.00 2 0 2
...................................................................................................AGGGCCGCCAGGGTTTGAGTGT........................................................... 22 1 1 2.00 2 0 2
.............................................................ACTCAAACCGTGGGGGCACTATT................................................................................................ 23 2 1 2.00 2 2 0
.............................................................ACTCCAACCGTGGGGGCACTT.................................................................................................. 21 1 1 2.00 2 2 0
.............................................................ACTCAAACCGTGGGGGCACTTTG................................................................................................ 23 1 1 2.00 2 2 0
.............................................................ACTCAAACCGTGGGGGCACTA.................................................................................................. 21 1 1 2.00 2 2 0
...................................................................................................AGTGCCGCCCGGGTTTGAGTGT........................................................... 22 1 1 2.00 2 0 2
...............................................................TCAAACCGTGGGGGCACTTT................................................................................................. 20 0 1 2.00 2 1 1
.............................................................ACTCAAACCGGGGGGGCACTTT................................................................................................. 22 1 1 2.00 2 2 0
...................................................................................................AGTGCCGCCGGGGTTTGAGTGT........................................................... 22 1 1 2.00 2 0 2
.............................................................ACTCAAACCGTGGGGGCACTATTT............................................................................................... 24 2 1 2.00 2 2 0
..............................................................CTCAAACCGTGGGGGCACTTTT................................................................................................ 22 1 1 2.00 2 2 0
...................................................................................................AGTGCCGCCAGGGTTTGAGTGAT.......................................................... 23 1 1 2.00 2 0 2
.............................................................ACTCAAACCGCGGGGGCACTT.................................................................................................. 21 1 1 1.00 1 1 0
...................................................................................................AGTGCCGCCATGGTTTGAGTGT........................................................... 22 1 1 1.00 1 0 1
.............................................................ACTCAAACCGAGGGGGCACTTT................................................................................................. 22 1 1 1.00 1 1 0
.............................................................ACTCAACCCGTGGGGGCACTTT................................................................................................. 22 1 1 1.00 1 1 0
...............................................................TCAAACCGTGGGGGCACT................................................................................................... 18 0 1 1.00 1 1 0
..............................................................CTCAAACCGTGGGGGCACTTA................................................................................................. 21 1 1 1.00 1 1 0
.............................................................ACTCAAACCGGGGGGGCACT................................................................................................... 20 1 1 1.00 1 1 0
...................................................................................................AGAGCCGCCAGGGTTTGAGTGT........................................................... 22 1 1 1.00 1 0 1
...................................................................................................AGAGCCGCCAGGGTTTGAGTG............................................................ 21 1 1 1.00 1 0 1
...................................................................................................AGTGCCGCCAGGGTTTGAGTGTAA......................................................... 24 2 1 1.00 1 1 0
.............................................................ACTCAAACCGTGGGGGCACTTTGT............................................................................................... 24 1 1 1.00 1 1 0
.......................................................................................................CCGCCAGGGTTTGAGTGT........................................................... 18 0 1 1.00 1 0 1
...................................................................................................AGTGCCGCCAGGTTTTGAGTGT........................................................... 22 1 1 1.00 1 0 1
.............................................................ACTCAAACCGTGGGGGCAATTT................................................................................................. 22 1 1 1.00 1 1 0
...................................................................................................AGTGCCGCCCGGGTTTGAGT............................................................. 20 1 1 1.00 1 0 1
.............................................................ACTCAAACCGTGCGGGCACTTTT................................................................................................ 23 2 1 1.00 1 1 0
................................................................CAAACCGTGGGGGCACTTTAT............................................................................................... 21 1 1 1.00 1 0 1
.............................................................ACTCAAACCGGGGGGGCACTT.................................................................................................. 21 1 1 1.00 1 1 0
.............................................................TCTCAAACCGTGGGGGCACTT.................................................................................................. 21 1 1 1.00 1 1 0
............................................................AACTCAAACCGTGGGGGCACTTA................................................................................................. 23 2 1 1.00 1 1 0
.............................................................ATTCAAACCGTGGGGGCACTTT................................................................................................. 22 1 1 1.00 1 1 0
................................................................CAAACCGTGGGGGCACTTTTTT.............................................................................................. 22 2 1 1.00 1 0 1
.............................................................ACTCAAACCGTGGGGGCACAATTT............................................................................................... 24 3 1 1.00 1 1 0
...................................................................................................AGTGCCGCCAGGGCTTGAGT............................................................. 20 1 1 1.00 1 1 0
...................................................................................................AGTGGCGCCAGGGTTTGAGT............................................................. 20 1 1 1.00 1 1 0
.................................................................AAACCGTGGGGGCACTT.................................................................................................. 17 0 1 1.00 1 0 1
...................................................................................................AGTGCCGCCAGGGTT.................................................................. 15 0 1 1.00 1 0 1
...................................................CCCCCGCGGGACTCAAACCGTGGGGGCACTTT................................................................................................. 32 3 1 1.00 1 0 1
.............................................................ACTCAAACCGTGGGGGCACTTTCGTA............................................................................................. 26 3 1 1.00 1 1 0
.................................................................................................GTAGTGCCGCCAGGGTTTGAGT............................................................. 22 2 2 1.00 2 0 2
..............................................................CTTAAACCGTGGGGGCACT................................................................................................... 19 1 1 1.00 1 1 0
......................................................................................................GCCGCCAGGGTTTGAGT............................................................. 17 0 1 1.00 1 0 1
.............................................................ACTCAAACCGTGGGGGCACTAG................................................................................................. 22 2 1 1.00 1 1 0
...................................................................................................AGTGCCGCCAGGGTTTGAGGGT........................................................... 22 1 1 1.00 1 0 1
.............................................................ACTCAAACCGTGGGGGCACTTGA................................................................................................ 23 2 1 1.00 1 1 0
...................................................................................................AGTGCCGCCAGGGTTTGAGTGAG.......................................................... 23 2 1 1.00 1 0 1
...................................................................................................AGCGCCGCCAGGGTTTGAGTG............................................................ 21 1 1 1.00 1 0 1
...............................................................TCAAACCGTGGGGGCACTTTA................................................................................................ 21 1 1 1.00 1 1 0
.............................................................ACTCAACCCGTGGGGGCACT................................................................................................... 20 1 1 1.00 1 1 0
...................................................................................................AGTGCCGCCAGGGTTTTAGT............................................................. 20 1 1 1.00 1 1 0
.............................................................ACTCAAACCGTGGGGGCACTAAT................................................................................................ 23 3 1 1.00 1 1 0
....................................................................................................GGGCCGCCAGGGTTTGAGTGT........................................................... 21 1 1 1.00 1 0 1
.............................................................ACTCAAACCGTGGGGGCTCTTA................................................................................................. 22 2 1 1.00 1 1 0
........................................................................................................CGCCAGGGTTTGAGTGT........................................................... 17 0 1 1.00 1 0 1
.............................................................ACTCAAACCGTGGGGGCACAA.................................................................................................. 21 2 1 1.00 1 1 0
.............................................................ACTCAAACCGTGGGGGCATATT................................................................................................. 22 2 1 1.00 1 1 0
...................................................................................................AGTGCCGCCAGGTTTTGAG.............................................................. 19 1 1 1.00 1 0 1
.............................................................ACTCAAACCGTGGGGGCAATT.................................................................................................. 21 1 1 1.00 1 1 0
.............................................................ACTCAAACCGTGGGGGCACTTAAT............................................................................................... 24 2 1 1.00 1 0 1
.................................................................................................ACAGTGCCGCCAGGGTTTGAGTGTAG......................................................... 26 2 1 1.00 1 1 0
...................................................................................................AGCGCCGCCAGGGTTTGAGTGT........................................................... 22 1 1 1.00 1 0 1
...................................................................................................AGTGCCGCCAGGGTTTGAGTGCTTT........................................................ 25 3 1 1.00 1 0 1
.............................................................ACTCAAACCGTGGGGGCACGT.................................................................................................. 21 1 1 1.00 1 1 0
.............................................................ACTCAAACCGTGGGGGCACCTTTT............................................................................................... 24 2 1 1.00 1 0 1
.............................................................ACTCAAACCGTGGGGGCACTTTTAGC............................................................................................. 26 3 1 1.00 1 1 0
..................................................................................................AAGTGCCGCCAGGGTTTGAGTGT........................................................... 23 1 1 1.00 1 1 0
.............................................................ACTCAAACCGTGGGGGCACAAT................................................................................................. 22 2 1 1.00 1 1 0
.............................................................ACTCAAACCGTGGGGGCACTTCCT............................................................................................... 24 1 1 1.00 1 1 0
............................................................AACTCAAACCGTGGGGGCACTTTTA............................................................................................... 25 3 1 1.00 1 1 0
......................................................................................................GCCGCCAGGGTTCGAGTGT........................................................... 19 1 1 1.00 1 0 1
................................................................CAAACCGTGGGGGCACT................................................................................................... 17 0 1 1.00 1 0 1
..............................................................CTCAAACCGTGGGGGCACTT.................................................................................................. 20 0 1 1.00 1 1 0
.............................................................ACTCAAACCGTGGGGGCACTTTTGA.............................................................................................. 25 3 1 1.00 1 1 0
.................................................................AAACCGTGGGGGCACT................................................................................................... 16 0 1 1.00 1 0 1
.............................................................ACTCAAACCGGGGGGGCACTTTTA............................................................................................... 24 3 1 1.00 1 1 0
...................................................................................................AGAGCCGCCAGGGTTTGAGT............................................................. 20 1 1 1.00 1 0 1
.............................................................................................GGGACGAGTGCCGCCAGGGTTTGAGT............................................................. 26 3 1 1.00 1 0 1
..........................................................ACTACTCAAACCGTGGGGGCACT................................................................................................... 23 3 1 1.00 1 1 0
.............................................................ACTCAAACAGTGGGGGCACTTT................................................................................................. 22 1 1 1.00 1 1 0
...................................................................................................AGTGCCGACAGGGTTTGAGTG............................................................ 21 1 1 1.00 1 0 1
...................................................................................................AGTGCCGCCAGGGTTTGAGTGTA.......................................................... 23 1 1 1.00 1 1 0
..................................................................................................AAGTGCCGCCAGGGTTTGAGTG............................................................ 22 1 1 1.00 1 1 0
.............................................................ACTCAAACCGTGGGGGAACTTTTT............................................................................................... 24 2 1 1.00 1 0 1
.............................................................ACTCAAACCGTGGGGGCACTTATA............................................................................................... 24 3 1 1.00 1 1 0
...................................................................................................AGTGCCTCCAGGGTTTGAGTGT........................................................... 22 1 1 1.00 1 0 1
.............................................................ACTCGAACCGTGGGGGCACTT.................................................................................................. 21 1 1 1.00 1 1 0
.............................................................ACTCAACCCGTGGGGGCACTT.................................................................................................. 21 1 1 1.00 1 1 0
...................................................................................................AGTGCCGCCAGGGATTGAGT............................................................. 20 1 1 1.00 1 1 0
...................................................................ACCGTGGGGGCACTTTA................................................................................................ 17 1 6 0.83 5 0 5
................................................................CAAACCGTGGGGGCAC.................................................................................................... 16 0 3 0.67 2 0 2
...................................................................................................AGTGCCGCCAGGGTTTGAGTGCCA......................................................... 24 3 2 0.50 1 1 0
...................................................................................................AGTGCCGCCAGGGTTTGAGA............................................................. 20 1 2 0.50 1 0 1
...................................................................................................AGTGCCGCCAGGGTTTGAGTGTAAT........................................................ 25 3 2 0.50 1 1 0
...................................................................................................AGGGCCGCCAGGGTTTGAG.............................................................. 19 1 2 0.50 1 0 1
..................................................................AACCGTGGGGGCACTTTA................................................................................................ 18 1 2 0.50 1 0 1
.....................................................................................................TGCCGCCAGGGTTTGAG.............................................................. 17 0 2 0.50 1 0 1
............................................................AACTCAAACCGTGGGGGCACTTAA................................................................................................ 24 3 2 0.50 1 1 0
.............................................................ACTCAAACCGTGGGGGCACTTCA................................................................................................ 23 2 2 0.50 1 1 0
....................................................................................................GTGCCGCCAGGGTTTGA............................................................... 17 0 2 0.50 1 0 1
.............................................................ACTCAAACCGTGGGGGCACTCCT................................................................................................ 23 3 2 0.50 1 1 0
.............................................................ACTCAAACCGTGGCGGCACTTAA................................................................................................ 23 3 2 0.50 1 1 0
...................................................................................................AGTGACGCCAGGGTTTGAGT............................................................. 20 1 2 0.50 1 0 1
.............................................................TCTCAAACCGTGGGGGCACTTA................................................................................................. 22 2 2 0.50 1 1 0
...................................................................................................AGTGCCGCCAGGGTTTGAGTGCCT......................................................... 24 3 2 0.50 1 1 0
...................................................................................................AGTGCCGCCAGGGTTTGAGTGCA.......................................................... 23 2 2 0.50 1 0 1
.............................................................ACTCATACCGTGGGGGCACTTTTA............................................................................................... 24 3 2 0.50 1 1 0
.................................................................AAACCGTGGGGGCACTTTAT............................................................................................... 20 1 2 0.50 1 0 1
.............................................................ACTCAAACCGTGGGGGAAATTT................................................................................................. 22 2 2 0.50 1 1 0
.................................................................AAACCGGGGGGGCACTTTTT............................................................................................... 20 2 3 0.33 1 0 1
.............................................................ACTCTAACCGTGGGGGCCCT................................................................................................... 20 2 3 0.33 1 1 0
............................................................AACTCAAACCTTGGGGGCACT................................................................................................... 21 2 3 0.33 1 1 0
...................................................................................................AGAGCCGCCAGGGTTTGAG.............................................................. 19 1 3 0.33 1 0 1
....................................................................CCGTGGGGGCACTTT................................................................................................. 15 0 4 0.25 1 0 1
................................................................CAAACCGTGGGGGCACTTAA................................................................................................ 20 2 4 0.25 1 1 0
.........................................................GGAAACTCAAACCGTGGGGGCACT................................................................................................... 24 3 4 0.25 1 1 0
.................................................................AAACCGTGGGGGCACTTAT................................................................................................ 19 2 10 0.20 2 0 2
...........................................................................................TTGAGTGTAGTGCCGCCAGGGT................................................................... 22 3 6 0.17 1 0 1
...............................................................................................ATTTAGTGCCGCCAGGGTTTGA............................................................... 22 3 7 0.14 1 1 0
.............................................................ACTCAAACCGTGGGGGCAAAAT................................................................................................. 22 3 9 0.11 1 1 0
.............................................................ACTCAAACCGTGGGGGCACAAA................................................................................................. 22 3 10 0.10 1 1 0
.............................................................ACTCAAACCGTGGTGGCATAT.................................................................................................. 21 3 16 0.06 1 1 0

Anti-sense strand reads

GGTCCGCGTTGGCAGTCGAAGGTCTTCGAAGGGGCCGTCCTGGGGTAGGAGACGGACGCCCTGAGTTTGGCACCCCCGTGAAAGACCGCAGACCTCATCTCACGGCGGTCCCAAACTCACAACGGCCACCCCTTCCGGCTGCCCCCCGCTGGGTCGCGTGCTACGCGTGTGGAAGGGCCG
********************************************(((.(((((.((((.(((((((((.(((.((((((((((((...)))))...))))))).))).))))))))).)))).))))))))...**********************************************
Read size # Mismatch Hit Count Total Norm Total GSM1528821
Adult_testes_Mili_IP
................................................................................................AATTCACGGCGGTGCCAAACTCA............................................................. 23 3 2 0.50 1 1

Generated: 05/16/2015 at 12:56 AM