ID:

ocu-mir-28a

 Coordinate:

chr14:84299157-84299242 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-41.4 -41.1 -41.1

Sense Strand Reads

ACAGTAGATACCATGTTTAGTGCTGAAGACATGAGAAAGAATAAAAAATTGGTCCTTGCCCCCAAGGAGCTCACAGTCTATTGAGTTGCCATTCTGACTTCCCCACTAGATTATGAGCTCCTGGAGGGCAGGCACTTTTATTCATCTGAAATAGAACATACAGTTCAGAGTGAAATTTGTCTTACA
************************************************..(((.((((((((((.((((((((.((((((.((((((........))))....)).)))))).))))))))))).))))))).)))...*********************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
...............................................................AAGGAGCTCACAGTCTATTGAG..................................................................................................... 22 0 1 110.00 110 109 1
...............................................................AAGGAGCTCACAGTCTATTGA...................................................................................................... 21 0 1 25.00 25 16 9
...............................................................AAGGAGCTCACAGTCTATTG....................................................................................................... 20 0 1 24.00 24 13 11
...............................................................AAGGAGCTCACAGTCTATTGAGT.................................................................................................... 23 0 1 14.00 14 14 0
...............................................................AAGGAGCTCACAGTCTATT........................................................................................................ 19 0 1 9.00 9 6 3
...............................................................AAGGACCTCACAGTCTATTGAG..................................................................................................... 22 1 1 3.00 3 3 0
..................................................................GAGCTCACAGTCTATTGAGT.................................................................................................... 20 0 1 2.00 2 2 0
.......................................................................................................CACTAGATTATGAGCTCCTGG.............................................................. 21 0 1 2.00 2 0 2
.......................................................................................................CACTAGATTATGAGCTCCTGGT............................................................. 22 1 1 2.00 2 2 0
..............................................................CAAGGAGCTCACAGTCTAT......................................................................................................... 19 0 1 2.00 2 2 0
......................................................................................................CCACTAGATTATGAGCTCCTG............................................................... 21 0 1 2.00 2 0 2
...............................................................AAGGAGCTCACAGTCTATTGAT..................................................................................................... 22 1 2 1.50 3 3 0
......................................................................................................CCACTAGATTATGAGCTCCTGG.............................................................. 22 0 1 1.00 1 0 1
................................................................AGGAGCTCACAGTCTATTGAG..................................................................................................... 21 0 1 1.00 1 1 0
.......................................................................................................CACTAGATTATGAGCTCCTG............................................................... 20 0 1 1.00 1 0 1
...................................................................AGCTCACAGTCTATTGAG..................................................................................................... 18 0 1 1.00 1 1 0
.......................................................................................................CACTAGATTATGAGCTCCTGGA............................................................. 22 0 1 1.00 1 0 1
...............................................................AAGGAGCTCACAGTCTAT......................................................................................................... 18 0 2 1.00 2 1 1
..............................................................AAAGGAGCTCACAGTCTATTGAG..................................................................................................... 23 1 1 1.00 1 1 0
...............................................................AAGGCGCTCACAGTCTATTGAG..................................................................................................... 22 1 1 1.00 1 1 0
.......................................................................................................CACTAGATTGTGAGCTCCTGG.............................................................. 21 1 5 0.60 3 3 0
...............................................................AAGGAGCTCACAGTCTATTGAA..................................................................................................... 22 1 2 0.50 1 1 0
.......................................................................................................CACTAGATTGTGAGCTCCTG............................................................... 20 1 10 0.10 1 1 0

Anti-sense strand reads

TGTCATCTATGGTACAAATCACGACTTCTGTACTCTTTCTTATTTTTTAACCAGGAACGGGGGTTCCTCGAGTGTCAGATAACTCAACGGTAAGACTGAAGGGGTGATCTAATACTCGAGGACCTCCCGTCCGTGAAAATAAGTAGACTTTATCTTGTATGTCAAGTCTCACTTTAAACAGAATGT
***********************************************..(((.((((((((((.((((((((.((((((.((((((........))))....)).)))))).))))))))))).))))))).)))...************************************************ 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:34 AM