ID:

ocu-mir-25

 Coordinate:

chrUn0062:103165-103248 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-36.3 -36.3 -36.3

Sense Strand Reads

GAGTTCGGAAGGGTCTGGTCTCCCTCACAGGACAGCTGAACACCGGGACTGGCCAGTGTTGAGAGGCGGAGACTTGGGCAATTGCTGGACGCTGCCCTGGGCATTGCACTTGTCTCGGTCTGACAGTGCCGGCCCTACACTGCGGATGTGGGGGAGCAGGGGAGGGGTCCCTGCTCCTTTTGCG
************************************************..((((.((((((..((((.(((((..(((((((..((((........))))..))))).)).))))).))))..)))))).))))....********************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
.....................................................................................................CATTGCACTTGTCTCGGTCTGA............................................................. 22 0 1 459.00 459 444 15
.....................................................................................................CATTGCACTTGTCTCGGTCT............................................................... 20 0 1 83.00 83 67 16
.....................................................................................................CATTGCACTTGTCTCGGTCTGAT............................................................ 23 1 1 53.00 53 53 0
......................................................................................................ATTGCACTTGTCTCGGTCTGA............................................................. 21 0 1 24.00 24 22 2
.....................................................................................................CATTGCACTTGTCTCGGTCTG.............................................................. 21 0 1 20.00 20 7 13
....................................................................................................ACATTGCACTTGTCTCGGTCTGA............................................................. 23 1 1 15.00 15 2 13
.....................................................................................................CATTGCACTTGTCTCGGTCTGT............................................................. 22 1 1 12.00 12 11 1
...........................................................................................................ACTTGTCTCGGTCTGA............................................................. 16 0 1 10.00 10 10 0
.....................................................................................................CATTGCACTTGTCTCGGT................................................................. 18 0 1 7.00 7 7 0
.....................................................................................................CATTGCACTTGTCTCGGTCTGAA............................................................ 23 1 1 6.00 6 1 5
....................................................................................................ACATTGCACTTGTCTCGGTCTGAA............................................................ 24 2 1 5.00 5 0 5
..........................................................................................................CACTTGTCTCGGTCTGA............................................................. 17 0 1 4.00 4 4 0
.....................................................................................................CATTGCACTTGTCTCGGTC................................................................ 19 0 1 4.00 4 3 1
.........................................................................................................GCACTTGTCTCGGTCT............................................................... 16 0 1 3.00 3 3 0
.....................................................................................................CATTGCACTTGTCTCGGGCTGA............................................................. 22 1 1 3.00 3 3 0
....................................................................................................ACATTGCACTTGTCTCGGTCTGT............................................................. 23 2 1 2.00 2 1 1
.................................................................................................TGGGCATTGCACTTGTCTCGGTCTGA............................................................. 26 0 1 2.00 2 2 0
................................................................................................CTGGGCATTGCACTTGTCTCGGTCTGA............................................................. 27 0 1 2.00 2 2 0
............................................................................................................CTTGTCTCGGTCTGA............................................................. 15 0 2 2.00 4 4 0
......................................................................................................ATTGCACTTGTCTCGGTCTGAT............................................................ 22 1 1 2.00 2 2 0
.....................................................................................................CATTGCACTTGTCTCGGCCTGA............................................................. 22 1 1 2.00 2 2 0
.....................................................................................................CATCGCACTTGTCTCGGTCTGA............................................................. 22 1 1 1.00 1 0 1
......................................................................................................ATTGCACTTGTCTCGGTCT............................................................... 19 0 1 1.00 1 1 0
..........................................CCGGGACTGGCCAGTGTTGAG......................................................................................................................... 21 0 1 1.00 1 1 0
.....................................................................................................CATTGCACTTGTCTCGGTCTGG............................................................. 22 1 1 1.00 1 1 0
.....................................................................................................TATTGCACTTGTCTCGGTCTGAA............................................................ 23 2 1 1.00 1 0 1
.....................................................................................................CATTGCCCTTGTCTCGGTCTGA............................................................. 22 1 1 1.00 1 1 0
................................................................................................AGGGGCATTGCACTTGTCTCGGTC................................................................ 24 2 1 1.00 1 0 1
.....................................................................................................CATTGCACTTGTCTCGGTCTGAAAA.......................................................... 25 2 1 1.00 1 0 1
..........................................................................................................CACTTGTCTCGGTCTTA............................................................. 17 1 1 1.00 1 1 0
...............................................................AGGCGGAGACACGGGCAATTG.................................................................................................... 21 2 1 1.00 1 1 0
......................................................................................................ATTGCACTTGTCTCGGTCTG.............................................................. 20 0 1 1.00 1 0 1
.....................................................................................................CATTGCACTTGTCTCGGTCTGAAA........................................................... 24 1 1 1.00 1 0 1
................................................................................................CCGAGCATTGCACTTGTCTCGGTCT............................................................... 25 2 1 1.00 1 0 1
.....................................................................................................CATTGCACTTGCCTCGGTCTGA............................................................. 22 1 1 1.00 1 1 0
.....................................................................................................CATTGCACTTGTCTCGGTCCGAAT........................................................... 24 3 1 1.00 1 1 0
.....................................................................................................CATTGCACTTGTCTCGGGCT............................................................... 20 1 1 1.00 1 1 0
....................................................................................................ACATTGCACTTGTCTCGGTCTGTT............................................................ 24 3 1 1.00 1 0 1
......................................................................................................ATTGCACTTGTCTCGGTCTGT............................................................. 21 1 1 1.00 1 1 0
.....................................................................................................CATTGCACTTGTCTCGGTCTGAAT........................................................... 24 2 1 1.00 1 1 0
...................................................................................................GACATTGCACTTGTCTCGGT................................................................. 20 1 1 1.00 1 1 0
.....................................................................................................CATTGCACTTGTCTCGGTCCGAT............................................................ 23 2 1 1.00 1 1 0
.....................................................................................................CATTGCACTTGTCTCAGTCTGA............................................................. 22 1 1 1.00 1 1 0
.....................................................................................................CATTGCATTTGTCTCGGTCTGA............................................................. 22 1 1 1.00 1 0 1
....................................................................................................ACATTGCACTTGTCTCGGTCTGAAT........................................................... 25 3 1 1.00 1 0 1
..........................................CCGGGACTGGTCAGTGTTGAG......................................................................................................................... 21 1 1 1.00 1 1 0
...............................................................AGGCGGAGACTTGGGCAATTGCT.................................................................................................. 23 0 1 1.00 1 1 0
...............................................................AGGCGGAGACACGGGCAAT...................................................................................................... 19 2 8 0.38 3 3 0
..........................................................................................................CACTTGTCTCGGTCTGAT............................................................ 18 1 3 0.33 1 1 0
..................................................................................................AAACATTGCACTTGTCTCGGTCT............................................................... 23 3 3 0.33 1 0 1
............................................................................................................CTTGTCTCGGTCTGAT............................................................ 16 1 20 0.20 4 4 0
............................................................................................................CTTGTCTCGGTCTGAA............................................................ 16 1 20 0.10 2 2 0
...........................................................................................................AATTGTCTCGGTCTGA............................................................. 16 1 12 0.08 1 1 0

Anti-sense strand reads

CTCAAGCCTTCCCAGACCAGAGGGAGTGTCCTGTCGACTTGTGGCCCTGACCGGTCACAACTCTCCGCCTCTGAACCCGTTAACGACCTGCGACGGGACCCGTAACGTGAACAGAGCCAGACTGTCACGGCCGGGATGTGACGCCTACACCCCCTCGTCCCCTCCCCAGGGACGAGGAAAACGC
**********************************************..((((.((((((..((((.(((((..(((((((..((((........))))..))))).)).))))).))))..)))))).))))....************************************************ 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:54 AM