ID:

ocu-mir-23b

 Coordinate:

chr1:74102150-74102223 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-31.7 -31.1 -31.0

Sense Strand Reads

CGTGTGCGCGTGCGGACGGGGGCCGGGCAGGCGCTGCCCTCTGGTGCTCTGGCTGCTTGGGTTCCTGGCATGCTGATTTGTGACTTAAGATTAAAATCACATTGCCAGGGATTACCACGCAACCACGACCTTGGCTGCTCCTCCAGAGACCCGCAGTCGCGCTCTCCCTCTGCG
*******************************************....(((((.(((.(((((((((((((((.((((((..............)))))))).))))))))))..))).))).))).))....****************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
...............................................................................................ATCACATTGCCAGGGATTACCA......................................................... 22 0 1 710.00 710 501 209
...............................................................................................ATCACATTGCCAGGGATTTCCA......................................................... 22 1 1 458.00 458 458 0
...............................................................................................ATCACATTGCCAGGGATTACC.......................................................... 21 0 1 215.00 215 142 73
...............................................................................................ATCACATTGCCAGGGATTAC........................................................... 20 0 1 120.00 120 88 32
...............................................................................................ATCACATTGCCAGGGATTTCC.......................................................... 21 1 1 91.00 91 91 0
...............................................................................................ATCACATTGCCAGGGATTTC........................................................... 20 1 1 69.00 69 69 0
...............................................................................................ATCACATTGCCAGGGATTACCAC........................................................ 23 0 1 26.00 26 19 7
...............................................................................................ATCACATTGCCAGGGATTA............................................................ 19 0 2 24.50 49 14 35
...............................................................................................ATCACATTGCCAGGGATT............................................................. 18 0 2 20.50 41 19 22
...............................................................................................ATCACATTGCCAGGGAATTCCA......................................................... 22 2 2 18.50 37 8 29
................................................................................................TCACATTGCCAGGGATTACCA......................................................... 21 0 1 18.00 18 14 4
................................................................................................TCACATTGCCAGGGATTAC........................................................... 19 0 1 11.00 11 11 0
..............................................................................................AATCACATTGCCAGGGATTACCA......................................................... 23 0 1 10.00 10 2 8
...............................................................................................ATCACATTGCCAGGGATTACCAT........................................................ 23 1 1 10.00 10 8 2
...............................................................................................ATCACATTGCCAGGGAATTCC.......................................................... 21 2 3 9.33 28 0 28
...............................................................................................ATCACATTGCCAGGGATTACCACT....................................................... 24 1 1 9.00 9 9 0
.................................................................................................CACATTGCCAGGGATTACCA......................................................... 20 0 1 9.00 9 8 1
................................................................................................TCACATTGCCAGGGATTACC.......................................................... 20 0 1 5.00 5 4 1
...............................................................................................ATCACATTGCCAGGGATTACCAA........................................................ 23 1 1 5.00 5 3 2
...............................................................................................ATCACATTGCCAGGGATTCCCA......................................................... 22 1 1 4.00 4 4 0
...............................................................................................ATCACATTGCCAGGGATTTCCAA........................................................ 23 2 1 4.00 4 4 0
..............................................................................................AATCACATTGCCAGGGATTACC.......................................................... 22 0 1 4.00 4 3 1
...............................................................................................ATCACATTGCCAGGTATTACCA......................................................... 22 1 1 4.00 4 4 0
...............................................................................................ATCACATTGCCAGGGAT.............................................................. 17 0 2 3.00 6 4 2
...............................................................................................ATCACATTGCCAGGGATTT............................................................ 19 1 4 3.00 12 12 0
...............................................................................................ATCACATTGCCAGGGATTACCATTA...................................................... 25 3 3 3.00 9 9 0
................................................................................................TCACATTGCCAGGGATTACCAC........................................................ 22 0 1 2.00 2 1 1
................................................................................................TCACATTGCCAGGGATTTC........................................................... 19 1 1 2.00 2 2 0
...............................................................................................ATCACATTGCCAGTGATTAC........................................................... 20 1 1 2.00 2 2 0
..............................................................................................AATCACATTGCCAGGGAATTCC.......................................................... 22 2 2 2.00 4 0 4
...............................................................................................ATCACATTGCCAGGGATTACCC......................................................... 22 1 1 2.00 2 1 1
..............................................................................................AATCACATTGCCAGGGATTA............................................................ 20 0 1 2.00 2 0 2
..........................................................................................CAAAAATCACATTGCCAGGGATTACC.......................................................... 26 2 1 2.00 2 2 0
...................................................................................................CATTGCCAGGGATTACCAC........................................................ 19 0 1 2.00 2 2 0
..............................................................................................AATCACATTGCCAGGGAATTCCA......................................................... 23 2 2 1.50 3 0 3
..............................................................................................AATCACATTGCCAGGGAATTC........................................................... 21 2 4 1.50 6 0 6
...............................................................................................ATCACATTGCCAGGGAATTCCAT........................................................ 23 3 10 1.40 14 13 1
...............................................................................................TTCACATTGCCAGGGATTACCA......................................................... 22 1 1 1.00 1 0 1
...............................................................................................ATCACATTGCCAGAGATTAC........................................................... 20 1 1 1.00 1 1 0
...............................................................................................ATCACATTGCCAGGGATTACCATGA...................................................... 25 2 1 1.00 1 0 1
...............................................................................................ATCACATTGCCAGTGATTACCA......................................................... 22 1 1 1.00 1 0 1
...............................................................................................ATCACCTTGCCAGGGATTAC........................................................... 20 1 1 1.00 1 0 1
...............................................................................................ATCACATTGCCAGCGATTACCA......................................................... 22 1 1 1.00 1 1 0
...............................................................................................ATCACATAGCCAGGGATTACC.......................................................... 21 1 1 1.00 1 0 1
..............................................................................................AATCACATTGCCAGGGATT............................................................. 19 0 1 1.00 1 0 1
..........................................................................................TCGGAATCACATTGCCAGGGATTACCAC........................................................ 28 3 1 1.00 1 0 1
...............................................................................................ATCACATTTCCAGGGATTACCA......................................................... 22 1 1 1.00 1 0 1
................................................................................................TCACATTGCCAGGGATTACCACTAAA.................................................... 26 2 1 1.00 1 0 1
.............................................................................................TCATCACATTGCCAGGGATTACCA......................................................... 24 2 1 1.00 1 0 1
..........................................................................................TGACTATCACATTGCCAGGGATTACCA......................................................... 27 3 1 1.00 1 0 1
...............................................................................................ATCCCATTGCCAGGGATTACCA......................................................... 22 1 1 1.00 1 1 0
..........................................................GGGTTCCTGGCATGCTGATTTGTGAC.......................................................................................... 26 0 1 1.00 1 1 0
..........................................................GGGTTCCTGGCATGCTGATTT............................................................................................... 21 0 1 1.00 1 1 0
...............................................................................................ATCACATTGTCAGGGATTACCA......................................................... 22 1 1 1.00 1 1 0
...................................................................................................CATTGCCAGGGATTACC.......................................................... 17 0 1 1.00 1 1 0
..................................................................................................ACATTGCCAGGGATTAC........................................................... 17 0 1 1.00 1 0 1
...............................................................................................ATCACTTTGCCAGGGATTTCCA......................................................... 22 2 1 1.00 1 1 0
...............................................................................................ATCACATTGCCAGGGGTTACCA......................................................... 22 1 1 1.00 1 1 0
...............................................................................................ATCGCATTGCCAGGGATTACCA......................................................... 22 1 1 1.00 1 1 0
...............................................................................................ATCACATCGCCAGGGATTTCCA......................................................... 22 2 1 1.00 1 1 0
...............................................................................................ATCACATTGCCAGGGAATTCCACGC...................................................... 25 2 1 1.00 1 0 1
...............................................................................................ATCATATTGCCAGGGATTACCA......................................................... 22 1 1 1.00 1 1 0
...............................................................................................ATCACATTGCTAGGGATTAC........................................................... 20 1 1 1.00 1 0 1
...............................................................................................ATCAAATTGCCAGGGATTACC.......................................................... 21 1 1 1.00 1 1 0
...............................................................................................ATCACATCGCCAGGGATTACC.......................................................... 21 1 1 1.00 1 0 1
...............................................................................................ATCACATTGCCAGGGATTACCG......................................................... 22 1 1 1.00 1 1 0
...............................................................................................ATCACATTGACAGGGATTACCA......................................................... 22 1 1 1.00 1 1 0
....................................................................................................ATTGCCAGGGATTACC.......................................................... 16 0 1 1.00 1 1 0
...............................................................................................ATCAAATTGCCAGGGATTAC........................................................... 20 1 1 1.00 1 1 0
...............................................................................................ATCACATTGCCGGGGATTACC.......................................................... 21 1 1 1.00 1 0 1
...............................................................................................ATCACATTGCCAGGGATTGCCAT........................................................ 23 2 1 1.00 1 1 0
...............................................................................................ATCACATTGCCAGGGCTTAC........................................................... 20 1 1 1.00 1 1 0
...............................................................................................ATCACATTGCCAGGGAAT............................................................. 18 1 11 0.91 10 0 10
..............................................................................................AATCACATTGCCAGGGAATT............................................................ 20 2 20 0.70 14 0 14
...............................................................................................ATCACATTGCCAGGGAATTCCAAG....................................................... 24 3 2 0.50 1 0 1
...............................................................................................ATCACCTTGCCAGGGATTTCCA......................................................... 22 2 2 0.50 1 1 0
..............................................................................................AATCACATTGCCAGGGATTACCACTAG..................................................... 27 3 2 0.50 1 0 1
...............................................................................................ATCACATTGCCAGGGGTTTCCA......................................................... 22 2 2 0.50 1 1 0
...............................................................................................ATCACATTACCAGGGATTAC........................................................... 20 1 2 0.50 1 1 0
.................................................................................................CACATTGCCAGGGATTTCCA......................................................... 20 1 2 0.50 1 1 0
...............................................................................................ATCACATTGACAGGGATTTCCA......................................................... 22 2 2 0.50 1 1 0
................................................................................................TCACATTGCCAGGGATTA............................................................ 18 0 2 0.50 1 0 1
...............................................................................................ATCACATTGCCAGGGATTACCT......................................................... 22 1 2 0.50 1 0 1
............................................................................................CCCATCACATTGCCAGGGATTACCA......................................................... 25 3 2 0.50 1 0 1
.........................................................TGGGTTCCTGGCATGCTGAG................................................................................................. 20 1 2 0.50 1 1 0
..................................................................................................ACATTGTCAGGGATTACCA......................................................... 19 1 5 0.40 2 2 0
....................................................................................................ATTGCCAGGGATTACCAT........................................................ 18 1 5 0.40 2 2 0
.............................................................................................AAATCACATTGCCAGGGAAT............................................................. 20 1 3 0.33 1 0 1
...............................................................................................ATCACCTTGCCAGGGATTA............................................................ 19 1 3 0.33 1 0 1
...............................................................................................ATCACATTGCCAGGGATTTCTA......................................................... 22 2 3 0.33 1 1 0
...............................................................................................ATCACATTGCCAGGGATTACCCT........................................................ 23 2 3 0.33 1 0 1
...............................................................................................TTCACATTGCCAGGGATTA............................................................ 19 1 3 0.33 1 0 1
...............................................................................................ATCACATTGGCAGGGATTTCCA......................................................... 22 2 4 0.25 1 1 0
...............................................................................................ATCACATTGCCAGGGAATTCCAA........................................................ 23 3 14 0.21 3 0 3
...............................................................................................ATCACATTCCCAGGGATTTCCA......................................................... 22 2 5 0.20 1 1 0
...............................................................................................ATCACATTGCAAGGGATTTC........................................................... 20 2 5 0.20 1 1 0
...............................................................................................ATCACCTTGCCAGGGATT............................................................. 18 1 5 0.20 1 0 1
................................................................................................TCACATTGCCAGGGATTT............................................................ 18 1 7 0.14 1 1 0
..................................................................................................ACATTGCCAGGGATT............................................................. 15 0 8 0.13 1 1 0
..........................................................................................TTCACATCACATTGCCAGGGAAT............................................................. 23 3 9 0.11 1 0 1
...............................................................................................ATCACATTGCCAGGGCTTTC........................................................... 20 2 9 0.11 1 1 0
.............................................................................................AAATCACATTGCCAGGGAATT............................................................ 21 2 13 0.08 1 0 1
............................................................................................ACTGTCACATTGCCAGGGATTA............................................................ 22 3 17 0.06 1 0 1

Anti-sense strand reads

GCACACGCGCACGCCTGCCCCCGGCCCGTCCGCGACGGGAGACCACGAGACCGACGAACCCAAGGACCGTACGACTAAACACTGAATTCTAATTTTAGTGTAACGGTCCCTAATGGTGCGTTGGTGCTGGAACCGACGAGGAGGTCTCTGGGCGTCAGCGCGAGAGGGAGACGC
******************************************....(((((.(((.(((((((((((((((.((((((..............)))))))).))))))))))..))).))).))).))....******************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:27 AM