ID:

ocu-mir-222

 Coordinate:

chrX:30973567-30973645 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-41.2 -41.1

Sense Strand Reads

GTTCCTGCCCAGAAGGCTGCAGATTGCCCAGCTGTCAGATGGTCTAGGTACCCTCAATGGCTCAGTAGCCAGTGTAGATCCTGTCTTTTGTAATCAGTAGCTACATCTGGCTACTGGGTCTCTGATGGCATCTTCTAGCTTCTGTTATAGTCTCCTGAGCAAGGCCATTGGCTAGCACA
*******************************************..((((.((.(((..(((((((((((((((((((...(((...........)))...))))).))))))))))))))..))).)).)))).********************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
..................................................................................................AGCTACATCTGGCTACTGGGT............................................................ 21 0 1 487.00 487 463 24
..................................................................................................AGCTACATCTGGCTACTGGGTCT.......................................................... 23 0 1 274.00 274 258 16
..................................................................................................AGCTACATCTGGCTACTGGGTC........................................................... 22 0 1 70.00 70 47 23
.................................................................................................AAGCTACATCTGGCTACTGGGTCT.......................................................... 24 1 1 37.00 37 36 1
..................................................................................................AGCTACATCTGGCTACTGGGTCTT......................................................... 24 1 1 21.00 21 21 0
...................................................................................................GCTACATCTGGCTACTGGGT............................................................ 20 0 1 18.00 18 17 1
..................................................................................................AGCTACATCTGGCTACTGGGTCTC......................................................... 24 0 1 11.00 11 10 1
..................................................................................................AGCTACATCTGGCTACTGGGTCTCT........................................................ 25 0 1 11.00 11 9 2
..................................................................................................AGCTACATCTGGCTACTGG.............................................................. 19 0 1 10.00 10 3 7
.................................................................................................AAGCTACATCTGGCTACTGGGTC........................................................... 23 1 1 9.00 9 6 3
..................................................................................................AGCTACATCTGGCTACTGGG............................................................. 20 0 1 6.00 6 5 1
..................................................................................................AGCTACATCTGGCTACTGGGTAT.......................................................... 23 1 1 6.00 6 6 0
..................................................................................................AGCTACATCTGGCTACTGGGTCTTT........................................................ 25 1 1 6.00 6 6 0
.................................................................................................AAGCTACATCTGGCTACTGGGT............................................................ 22 1 1 5.00 5 4 1
..................................................................................................AGCTACATCTGGCTACTGGGTTT.......................................................... 23 1 1 4.00 4 4 0
..................................................................................................AGCTACATCTGGCTACTGGGTCTAT........................................................ 25 1 1 4.00 4 4 0
..................................................................................................AGCTATATCTGGCTACTGGGTCT.......................................................... 23 1 1 4.00 4 4 0
..................................................................................................AGCTACATCTGGCTACTGGGTCTCA........................................................ 25 1 1 4.00 4 2 2
..................................................................................................AGCTACATCTGGCTACTGGGG............................................................ 21 1 1 4.00 4 4 0
..........................................................GGCTCAGTAGCCAGTGTAGAT.................................................................................................... 21 0 1 4.00 4 4 0
..................................................................................................AGCTACATCTGGCTACTGGGA............................................................ 21 1 1 4.00 4 4 0
...................................................................................................GCTACATCTGGCTACTGGGTC........................................................... 21 0 1 3.00 3 1 2
..................................................................................................AGCTACATCTGGCTACTGGGTCTA......................................................... 24 1 1 3.00 3 1 2
..................................................................................................AGCTACATCTGGCTACTGGGTA........................................................... 22 1 1 3.00 3 1 2
..................................................................................................AGCTACATCTGGCTACTGGGTCTCTT....................................................... 26 1 1 3.00 3 3 0
...................................................................................................GCTACATCTGGCTACTGGGTCT.......................................................... 22 0 1 2.00 2 2 0
..................................................................................................AGCTACATCTGTCTACTGGGT............................................................ 21 1 1 2.00 2 2 0
.................................................................................................TAGCTACATCTGGCTACTGGGT............................................................ 22 0 1 2.00 2 2 0
.................................................................................................AAGCTACATCTGGCTACTGGGCCT.......................................................... 24 2 1 2.00 2 2 0
..................................................................................................AGCTACAACTGGCTACTGGGTCT.......................................................... 23 1 1 2.00 2 2 0
..................................................................................................AGCTACTTCTGGCTACTGGGTC........................................................... 22 1 1 2.00 2 2 0
..................................................................................................AGCTACATCTGGCTACTGGGC............................................................ 21 1 2 1.50 3 3 0
........................................................................................................ATCTGGCTACTGGGTCTCT........................................................ 19 0 1 1.00 1 1 0
..................................................................................................AGATACATCTGGCTACTGGGT............................................................ 21 1 1 1.00 1 1 0
..................................................................................................AGCTTCATCTGGCTACTGGGTCT.......................................................... 23 1 1 1.00 1 1 0
.....................................................................................................TACATCTGGCTACTGGGTCTTT........................................................ 22 1 1 1.00 1 1 0
.................................................................................................AAGCTACATCTGGCTACTGGGGCT.......................................................... 24 2 1 1.00 1 1 0
.....................................................................................................TACATCTGGCTACTGG.............................................................. 16 0 1 1.00 1 0 1
....................................................................................................CTACATCTGGCTACTGGGTCT.......................................................... 21 0 1 1.00 1 1 0
.................................................................................................AAGCTAAATCTGGCTACTGGGTCT.......................................................... 24 2 1 1.00 1 1 0
..................................................................................................AGCTACATCTGGCTACTGGGTCTCTGC...................................................... 27 1 1 1.00 1 0 1
.......................................................................................................CATCTGGCTACTGGGT............................................................ 16 0 1 1.00 1 1 0
..................................................................................................AGCTACATCTGGCTACTG............................................................... 18 0 1 1.00 1 1 0
..................................................................................................AGCAACATCTGGCTACTGGGT............................................................ 21 1 1 1.00 1 1 0
............................................................................................ATTTGTAGCTACATCTGGCTACTGG.............................................................. 25 2 1 1.00 1 0 1
..................................................................................................AGCTGCATCTGGCTACTGGGTCTT......................................................... 24 2 1 1.00 1 1 0
.......................................................................................................CATCTGGCTACTGGGTCT.......................................................... 18 0 1 1.00 1 1 0
..................................................................................................AGCTACATCTGGCTAATGGGT............................................................ 21 1 1 1.00 1 1 0
..................................................................................................AGCTACAACTGGCTACTGGGT............................................................ 21 1 1 1.00 1 1 0
..................................................................................................AGCTACATCTGGCTCCTGGGT............................................................ 21 1 1 1.00 1 1 0
.................................................................................................AAGCTACATCTGGCTACTGGGTCTTT........................................................ 26 2 1 1.00 1 0 1
...............................................................................................GAAAGCTACATCTGGCTACTGGGTCT.......................................................... 26 3 1 1.00 1 0 1
..................................................................................................ATCTACATCTGGCTACTGGGT............................................................ 21 1 1 1.00 1 0 1
...................................................................................................GCTACATCTGGCTACCGGGT............................................................ 20 1 1 1.00 1 1 0
..................................................................................................AGCTACATCTGGCTACTGGGTCC.......................................................... 23 1 1 1.00 1 1 0
....................................................................................................CTACATCTGGCTACTGGGT............................................................ 19 0 1 1.00 1 0 1
..................................................................................................AGCTACATCTGGCTACTGGGTCGT......................................................... 24 2 1 1.00 1 1 0
..................................................................................................AGCTACATCTGGCTAC................................................................. 16 0 1 1.00 1 1 0
..................................................................................................AGCTACATCTGGCTACTGGGGCT.......................................................... 23 1 1 1.00 1 1 0
..................................................................................................AGCTACGTCTGGCTACTGGGTCT.......................................................... 23 1 1 1.00 1 1 0
...................................................................................................GCTACATCTGGCTACTGGGTCTC......................................................... 23 0 1 1.00 1 0 1
..................................................................................................AGCTACATCTGGCTACCGGGT............................................................ 21 1 1 1.00 1 1 0
..................................................................................................AGCTACATCTGGCTACTGGGTT........................................................... 22 1 1 1.00 1 0 1
........................................................................................................ATCTGGCTACTGGGTCT.......................................................... 17 0 1 1.00 1 1 0
..................................................................................................AGCTACATCTGGCTACTGGGTCTAAT....................................................... 26 3 1 1.00 1 1 0
..................................................................................................AGCTACATCTGGCTACTGGGTCAT......................................................... 24 2 1 1.00 1 1 0
..................................................................................................AGCTACATCTGGCTACT................................................................ 17 0 1 1.00 1 1 0
.......................................................................................................CATCTGGCTACTGGGTCTT......................................................... 19 1 2 1.00 2 2 0
..................................................................................................AGCTACATCTGGCTACTGGGTCTCG........................................................ 25 1 1 1.00 1 0 1
..................................................................................................ACCTACATCTGGCTACTGGGT............................................................ 21 1 1 1.00 1 1 0
..................................................................................................AGCTACATCTCGCTACTGGGTCT.......................................................... 23 1 1 1.00 1 1 0
......................................................................................................ACATCTGGCTACTGGGT............................................................ 17 0 1 1.00 1 0 1
..................................................................................................AGCTCCATCTGGCTACTGGGT............................................................ 21 1 3 0.67 2 1 1
..................................................................................................AGCTACATCTGGCTACTGGGTAA.......................................................... 23 2 2 0.50 1 1 0
..................................................................................................ATCTACATCTGGCTACTGGGC............................................................ 21 2 2 0.50 1 1 0
..................................................................................................AGCTGCATCTGGCTACTGGGT............................................................ 21 1 2 0.50 1 1 0
..................................................................................................AGCCACATCTGGCTACTGGGTCTT......................................................... 24 2 2 0.50 1 1 0
...............................................................................................GAAAGCTACATCTGGCTACTGGGT............................................................ 24 3 3 0.33 1 0 1
..................................................................................................AGCTACATCTGGCTACTGGT............................................................. 20 1 3 0.33 1 1 0

Anti-sense strand reads

CAAGGACGGGTCTTCCGACGTCTAACGGGTCGACAGTCTACCAGATCCATGGGAGTTACCGAGTCATCGGTCACATCTAGGACAGAAAACATTAGTCATCGATGTAGACCGATGACCCAGAGACTACCGTAGAAGATCGAAGACAATATCAGAGGACTCGTTCCGGTAACCGATCGTGT
*********************************************..((((.((.(((..(((((((((((((((((((...(((...........)))...))))).))))))))))))))..))).)).)))).******************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 01:01 AM