ID:

ocu-mir-221

 Coordinate:

chrX:30972897-30972991 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-36.9 -36.9 -36.9

Sense Strand Reads

GCAGGCAATTGTGTCTTAAGTATTATGTCAGGATATCCTCCAGGCCAAATGTCCAGGTCTGGGGCATGAACCTGGCATACAATGTAGATTTCTGTGTTTTTTGGGCAACAGCTACATTGTCTGCTGGGTTTCAGGCTACCTGGAAGCATGTTCTCCATTGGTCATTTCATCAGTACTGCACCTGTAATGTTTCTG
******************************************************...((((((((.(((((((((((.(((((((((....((((((((...)))).))))))))))))).))))))).)))).))..))))))..************************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
.............................................................................................................AGCTACATTGTCTGCTGGGTTT................................................................ 22 0 1 335.00 335 318 17
.............................................................................................................AGCTACATTGTCTGCTGGGT.................................................................. 20 0 1 142.00 142 111 31
.............................................................................................................AGCTACATTGTCTGCTGGGTT................................................................. 21 0 1 102.00 102 61 41
.............................................................................................................AGCTACATTGTCTGCTGGGTTTT............................................................... 23 1 1 53.00 53 53 0
............................................................................................................AAGCTACATTGTCTGCTGGGTTT................................................................ 23 1 1 21.00 21 19 2
.............................................................................................................AGCTACATTGTCTGCTGGGTTTC............................................................... 23 0 1 14.00 14 14 0
............................................................................................................AAGCTACATTGTCTGCTGGGTT................................................................. 22 1 1 10.00 10 3 7
...............................................................................................................CTACATTGTCTGCTGGGTTT................................................................ 20 0 1 7.00 7 7 0
.....................................................................ACCTGGCATACAATGTAGATTT........................................................................................................ 22 0 1 5.00 5 5 0
.............................................................................................................AGCTACATTGTCTGCTGGGTTTCT.............................................................. 24 1 1 5.00 5 5 0
............................................................................................................AAGCTACATTGTCTGCTGGGT.................................................................. 21 1 1 4.00 4 0 4
.............................................................................................................AGCTACATTGTCTGCTGGG................................................................... 19 0 1 4.00 4 4 0
.............................................................................................................AGCTACATTGTCTGCTGGGTTTA............................................................... 23 1 1 4.00 4 3 1
.............................................................................................................AGCTACATTGTCTGCTGGTTT................................................................. 21 1 1 3.00 3 3 0
..........................................................................................................CCCAGCTACATTGTCTGCTGGGTTTC............................................................... 26 2 1 2.00 2 2 0
...............................................................................................................CTACATTGTCTGCTGGGT.................................................................. 18 0 1 2.00 2 2 0
..............................................................................................................GCTACATTGTCTGCTGGGTTT................................................................ 21 0 1 2.00 2 2 0
.............................................................................................................AGCTACATTGTCTGCTGGGGTT................................................................ 22 1 1 2.00 2 2 0
.............................................................................................................AGCTCCATTGTCTGCTGGGTT................................................................. 21 1 1 2.00 2 2 0
.............................................................................................................AGCTACATTGTCTGCTG..................................................................... 17 0 1 2.00 2 2 0
...................................................................................................................ATTGTCTGCTGGGTTTC............................................................... 17 0 1 2.00 2 2 0
.............................................................................................................AGCTACATTGTCTGCTGAGT.................................................................. 20 1 1 2.00 2 2 0
.............................................................................................................AGCTACATTGTCTGCTGG.................................................................... 18 0 1 2.00 2 2 0
.......................................................................................................GACGATAGCTACATTGTCTGCTGGGTT................................................................. 27 3 1 1.00 1 0 1
.............................................................................................................AGCTACATTGTCTGCTGGGCT................................................................. 21 1 1 1.00 1 1 0
.............................................................................................................AGCTACATTGTGTGCTGGGTTT................................................................ 22 1 1 1.00 1 1 0
.............................................................................................................AGCTACATTGTCTGTTGGGTTTC............................................................... 23 1 1 1.00 1 1 0
..............................................................................................................GCTACATTGTCTGCTGGGTT................................................................. 20 0 1 1.00 1 1 0
.............................................................................................................AGCTAGATTGTCTGCTGGGT.................................................................. 20 1 1 1.00 1 0 1
.....................................................................ACCTGGCATACAATGTAGATTTCT...................................................................................................... 24 0 1 1.00 1 0 1
.............................................................................................................AGCTCCATTGTCTGCTGGGTTT................................................................ 22 1 1 1.00 1 1 0
.............................................................................................................AGCTACATTGTCTGCTGGGTTC................................................................ 22 1 1 1.00 1 1 0
............................................................................................................AAGCTACATTGTCTGCTGGGTTTT............................................................... 24 2 1 1.00 1 0 1
.............................................................................................................AGCTACATTGTCTGCTGGGTTAT............................................................... 23 2 1 1.00 1 1 0
..........................................................................................................GAAAGCTACATTGTCTGCTGGGT.................................................................. 23 2 1 1.00 1 0 1
.............................................................................................................AGCTACATCGTCTGCTGGGTTT................................................................ 22 1 1 1.00 1 1 0
.............................................................................................................AGCTTCATTGTCTGCTGGGTTTT............................................................... 23 2 1 1.00 1 1 0
.............................................................................................................AGCTACATTGTCTGCTGGCTTTA............................................................... 23 2 1 1.00 1 1 0
.....................................................................ACCTGGCATACAATGTAGAT.......................................................................................................... 20 0 1 1.00 1 0 1
.............................................................................................................AGCTACATTGTCTGCTGGGTTTG............................................................... 23 1 1 1.00 1 1 0
................................................................................................................TACATTGTCTGCTGGGTTTC............................................................... 20 0 1 1.00 1 1 0
.............................................................................................................AGCTACGTTGTCTGCTGGGT.................................................................. 20 1 1 1.00 1 1 0
.............................................................................................................AGCTACATTGTCTGCTGGGCTTT............................................................... 23 2 1 1.00 1 1 0
..........................................................................................................CTCAGCTACATTGTCTGCTGGGTTT................................................................ 25 2 1 1.00 1 1 0
.............................................................................................................AGCTACATTGTCTGCTGGGC.................................................................. 20 1 2 0.50 1 1 0
...............................................................................................................CTAAATTGTCTGCTGGGTTT................................................................ 20 1 2 0.50 1 0 1
...................................................................................................................ATTGTCTGCTGGGTTT................................................................ 16 0 2 0.50 1 1 0
.............................................................................................................GGCTACATTGTCTGCTGGGT.................................................................. 20 1 2 0.50 1 1 0
.............................................................................................................AGCTACATTGTCTGCTGGGG.................................................................. 20 1 2 0.50 1 1 0
.............................................................................................................AGCTACATTGACTGCTGGGTTTT............................................................... 23 2 2 0.50 1 1 0
..................................................................................................................CATTGTCTGCTGGGTTT................................................................ 17 0 2 0.50 1 0 1
....................................................................................................................TTGTCTGCTGGGTTTC............................................................... 16 0 6 0.33 2 2 0
.............................................................................................................AGCTACATTGTCTGCTGGGCCT................................................................ 22 2 3 0.33 1 1 0
...................................................................................................................ATTGTCTGCTGGGTTTA............................................................... 17 1 20 0.20 4 4 0
.............................................................................................................TGCTACAATGTCTGCTGGGTT................................................................. 21 2 7 0.14 1 0 1

Anti-sense strand reads

CGTCCGTTAACACAGAATTCATAATACAGTCCTATAGGAGGTCCGGTTTACAGGTCCAGACCCCGTACTTGGACCGTATGTTACATCTAAAGACACAAAAAACCCGTTGTCGATGTAACAGACGACCCAAAGTCCGATGGACCTTCGTACAAGAGGTAACCAGTAAAGTAGTCATGACGTGGACATTACAAAGAC
*************************************************...((((((((.(((((((((((.(((((((((....((((((((...)))).))))))))))))).))))))).)))).))..))))))..****************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 01:01 AM