ID:

ocu-mir-22

 Coordinate:

chr19:16435640-16435734 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.8 -40.5 -40.5

Sense Strand Reads

TTCCTGTCTTTCTCCCCTTCCCTGTAGGAAACCGTACCTCTCCAGTTCTCACCTGGCTGAGCCGCAGTAGTTCTTCAGTGGCAAGCTTTATGTCCTGACCCAGCTAAAGCTGCCAGTTGAAGAACTGTTGCCCTCTGCCCCTGGCTTCGAGGAAGAAGAGCAAGAGGAGGAGCAGCAGCTGCTATCCCCGTCTTC
*****************************************************.(((.(((..((((((((((((((((((((.((((((.((.........))))))))))))).))))))))))))))).))).)))....**************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
..........................................................................................................AAGCTGCCAGTTGAAGAACTGT................................................................... 22 0 1 596.00 596 577 19
..........................................................................................................AAGCTGCCAGTTGAAGAACT..................................................................... 20 0 1 251.00 251 125 126
..........................................................................................................AAGCTGCCAGTTGAAGAACTG.................................................................... 21 0 1 50.00 50 38 12
....................................................................AGTTCTTCAGTGGCAAGCTTT.......................................................................................................... 21 0 1 49.00 49 30 19
....................................................................AGTTCTTCAGTGGCAAGCTT........................................................................................................... 20 0 1 36.00 36 10 26
..........................................................................................................AAGCTGCCAGTTGAAGAACTGA................................................................... 22 1 1 24.00 24 24 0
...........................................................................................................AGCTGCCAGTTGAAGAACTGT................................................................... 21 0 1 15.00 15 14 1
....................................................................AGTTCTTCAGTGGCAAGCTTTA......................................................................................................... 22 0 1 12.00 12 7 5
..........................................................................................................AAGCTGCCAGTTGAAGAAC...................................................................... 19 0 1 10.00 10 9 1
....................................................................AGTTCTTCAGTGGCAAGCT............................................................................................................ 19 0 1 9.00 9 2 7
....................................................................AGTTCTTCAGTGGCAAGCTTTT......................................................................................................... 22 1 1 9.00 9 9 0
.........................................................................................................AAAGCTGCCAGTTGAAGAACTGT................................................................... 23 0 1 8.00 8 7 1
..........................................................................................................AAGCTGCCAGTTGAAGAACTGC................................................................... 22 1 1 7.00 7 7 0
..........................................................................................................AAGCTGCCAGTTGAAGAACTGTA.................................................................. 23 1 1 5.00 5 3 2
...........................................................................................................AGCTGCCAGTTGAAGAACTGTT.................................................................. 22 0 1 5.00 5 5 0
..........................................................................................................AAGCTGCCAGTTGAAGA........................................................................ 17 0 1 4.00 4 3 1
.....................................................................GTTCTTCAGTGGCAAGCTTT.......................................................................................................... 20 0 1 4.00 4 4 0
..........................................................................................................AAGCTGCCAGTTTAAGAACTGT................................................................... 22 1 1 4.00 4 4 0
...........................................................................................................AGCTGCCAGTTGAAGAACT..................................................................... 19 0 1 3.00 3 2 1
.........................................................................................................AAAGCTGCCAGTTGAAGAACT..................................................................... 21 0 1 3.00 3 0 3
..........................................................................................................AAGCTGCCAGTTGAAGAACTGTT.................................................................. 23 0 1 3.00 3 3 0
..........................................................................................................AAGCTCCCAGTTGAAGAACTGT................................................................... 22 1 1 3.00 3 3 0
.........................................................................................................AAATCTGCCAGTTGAAGAACTGT................................................................... 23 1 1 3.00 3 3 0
..........................................................................................................AAGCTGCCAGTTGAAGAA....................................................................... 18 0 1 3.00 3 1 2
..........................................................................................................AAGCTGCCAGTTGAAGAACTGTG.................................................................. 23 1 1 3.00 3 3 0
....................................................................AGTTCTTCAGTGGCAAGCTTTTT........................................................................................................ 23 1 1 3.00 3 3 0
........................................................................CTTCAGTGGCAAGCTTT.......................................................................................................... 17 0 1 2.00 2 2 0
...................................................................AAGTTCTTCAGTGGCAAGCTT........................................................................................................... 21 1 1 2.00 2 0 2
..........................................................................................................AAGCTGCCTGTTGAAGAACTGT................................................................... 22 1 1 2.00 2 2 0
..........................................................................................................AAGCTGCCAGTTGAAGAACTGTAT................................................................. 24 2 1 2.00 2 2 0
.....................................................................................................GACGAAAGCTGCCAGTTGAAGAACT..................................................................... 25 3 1 2.00 2 1 1
...................................................................AAGTTCTTCAGTGGCAAGCTTT.......................................................................................................... 22 1 1 2.00 2 2 0
...................................................................AAGTTCTTCAGTGGCAAGCT............................................................................................................ 20 1 1 2.00 2 0 2
.........................................................................................................CAAGCTGCCAGTTGAAGAACTGT................................................................... 23 1 1 1.00 1 1 0
............................................................................................................GCTGCCAGTTGAAGAACTG.................................................................... 19 0 1 1.00 1 1 0
...................................................................TAGTTCTTCAGTGGCAAGCTTTAT........................................................................................................ 24 0 1 1.00 1 1 0
....................................................................AGTTCTTCAGTGGCAAGCTTTAA........................................................................................................ 23 1 1 1.00 1 0 1
..............................................................................................................TGCCAGTTGAAGAACTGT................................................................... 18 0 1 1.00 1 1 0
.........................................................................................................GAAGCTGCCAGTTGAAGAACT..................................................................... 21 1 1 1.00 1 0 1
..........................................................................................................AAGCCGCCAGTTGAAGAACT..................................................................... 20 1 1 1.00 1 1 0
..........................................................................................................ACGCTGCCAGTTGAAGAACT..................................................................... 20 1 1 1.00 1 0 1
..........................................................................................................AAACTGCCAGTTGAAGAACTGT................................................................... 22 1 1 1.00 1 1 0
....................................................................AGTCCTTCAGTGGCAAGCTTTA......................................................................................................... 22 1 1 1.00 1 0 1
............................................................................................................GCTGCCAGTTGAAGAACTGT................................................................... 20 0 1 1.00 1 1 0
..........................................................................................................TAGCTGCCAGTTGAAGAACTG.................................................................... 21 1 1 1.00 1 0 1
..........................................................................................................AAGCTACCAGTTGAAGAACTGT................................................................... 22 1 1 1.00 1 1 0
..........................................................................................................AAGCTGCCAGTCGAAGAACTGT................................................................... 22 1 1 1.00 1 1 0
..........................................................................................................AAGCTGCCAGTTGAAGAACTGTAA................................................................. 24 2 1 1.00 1 0 1
...........................................................................................................ATCTGCCAGTTGAAGAACTGT................................................................... 21 1 1 1.00 1 1 0
........................................................................................................AAAAGCTGCCAGTTGAAGAACTGT................................................................... 24 1 1 1.00 1 1 0
..........................................................................................................ACGCTGCCAGTTGAAGAACTGT................................................................... 22 1 1 1.00 1 1 0
...............................................................................................................GCCAGTTGAAGAACTGT................................................................... 17 0 1 1.00 1 1 0
..........................................................................................................AAGCTGCGAGTTGAAGAACTG.................................................................... 21 1 1 1.00 1 1 0
..........................................................................................................AAGCTGCCAGTTGAAG......................................................................... 16 0 1 1.00 1 1 0
...........................................................................................................AGCTGCCAGTTGAAGAACTGAT.................................................................. 22 1 1 1.00 1 1 0
..........................................................................................................AAGCAGCCAGTTGAAGAACTGT................................................................... 22 1 1 1.00 1 1 0
..........................................................................................................AAGCTGCTAGTTGAAGAACTGT................................................................... 22 1 1 1.00 1 1 0
.......................................................................................................GAAAAGCTGCCAGTTGAAGAACT..................................................................... 23 2 1 1.00 1 0 1
...........................................................................................................AGCTGCCAGTTGAAGAA....................................................................... 17 0 2 0.50 1 0 1
.....................................................................GGTCTTCAGTGGCAAGCTTT.......................................................................................................... 20 1 2 0.50 1 1 0
......................................................................................................GACGAAGCTGCCAGTTGAAGAACT..................................................................... 24 3 2 0.50 1 0 1
..........................................................................................................AAGATGCCAGTTGAAGAACT..................................................................... 20 1 2 0.50 1 1 0
..........................................................................................................AAGCTGCCAGTTGAAAAACT..................................................................... 20 1 3 0.33 1 0 1
......................................................................................................GAGGAAGCTGCCAGTTGAAGAACT..................................................................... 24 3 3 0.33 1 0 1
.......................................................................................................GACAAGCTGCCAGTTGAAGAACT..................................................................... 23 3 7 0.14 1 0 1
......................................................................................................AGAAAAGCTGCCAGTTGAAGAACT..................................................................... 24 3 8 0.13 1 0 1

Anti-sense strand reads

AAGGACAGAAAGAGGGGAAGGGACATCCTTTGGCATGGAGAGGTCAAGAGTGGACCGACTCGGCGTCATCAAGAAGTCACCGTTCGAAATACAGGACTGGGTCGATTTCGACGGTCAACTTCTTGACAACGGGAGACGGGGACCGAAGCTCCTTCTTCTCGTTCTCCTCCTCGTCGTCGACGATAGGGGCAGAAG
****************************************************.(((.(((..((((((((((((((((((((.((((((.((.........))))))))))))).))))))))))))))).))).)))....***************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:39 AM