ID:

ocu-mir-19b-2

 Coordinate:

chrX:108518495-108518578 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-41.7 -41.5 -41.4
mature
  1. chr8:93068345-93068365 +
  2. chrX:108518505-108518525 -
star

Sense Strand Reads

CTGGGATAATGAGTCTCCTGTTGATGGCCAGGATGTTCAGAATCAATGCTACTCACAATTAGTTTTGCAGGTTTGCATTTCAGCGTATACCTGTATACATGGCTGTGCAAATCCATGCAAAACTGATTGTGATCACGTGTGCTTTCTACATTTTGTGGACACCTCCGTGTACATACCAGCATTC
***********************************...((((...((((...(((((((((((((((((((((((((...(((((((((....)))))...)))))))))).)).)))))))))))))))))....))))...))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
.......................................................................................................TGTGCAAATCCATGCAAAACT............................................................ 21 0 2 134.00 268 206 62
.......................................................................................................TGTGCAAATCCATGCAAAACTGA.......................................................... 23 0 2 52.00 104 51 53
.......................................................................................................TGTGCAAATCCATGCAAAACTG........................................................... 22 0 2 33.50 67 31 36
.......................................................................................................TGTGCAAATCCATGCAAAAC............................................................. 20 0 3 10.00 30 14 16
.......................................................................................................TGTGCAAATCCATGCAAAACTGAT......................................................... 24 0 1 10.00 10 10 0
........................................................................................................GTGCAAATCCATGCAAAACT............................................................ 20 0 2 9.00 18 17 1
.......................................................................................................TGTGCAAATCCATGCAAAA.............................................................. 19 0 3 7.33 22 7 15
.......................................................................................................TGTGCAAATCCATGCAAAACTGT.......................................................... 23 1 2 5.50 11 9 2
.......................................................................................................TGTGCAAATCCATGCA................................................................. 16 0 9 3.56 32 32 0
......................................................................................................ATGTGCAAATCCATGCAAAACT............................................................ 22 1 2 3.50 7 2 5
........................................................................................................GTGCAAATCCATGCAAAACTGA.......................................................... 22 0 2 3.50 7 3 4
.......................................................................................................TGTGCAAATCCATGCAAAACTGAA......................................................... 24 1 2 3.00 6 1 5
........................................................................................................GTGCAAATCCATGCAAAACTGAT......................................................... 23 0 1 2.00 2 2 0
........................................................................................................GTGCAAATCCATGCAAAACTG........................................................... 21 0 2 1.50 3 0 3
......................................................................................................ATGTGCAAATCCATGCAAAACTGA.......................................................... 24 1 2 1.50 3 0 3
.........................................................................................................TGCAAATCCATGCAAAA.............................................................. 17 0 3 1.33 4 4 0
.......................................................................................................TGAGCAAATCCATGCAAAACT............................................................ 21 1 2 1.00 2 1 1
.......................................................................................................TGTGCAAATCCATGCAAA............................................................... 18 0 4 1.00 4 0 4
......................................................................................................ATGTGCAAATCCATGCAAAACTG........................................................... 23 1 2 1.00 2 2 0
.......................................................................................................TGGGCAAATCCATGCAAAACT............................................................ 21 1 3 1.00 3 2 1
.........................................................................................................TGCAAATCCATGCAAAACTGTG......................................................... 22 2 6 0.67 4 4 0
........................................................................................................GTGCAAATCCATGCAAAA.............................................................. 18 0 3 0.67 2 0 2
.......................................................................................................TGTGCAAATCCATTCAAAACTGA.......................................................... 23 1 2 0.50 1 0 1
.......................................................................................................TGTGCAACTCCATGCAAAACT............................................................ 21 1 2 0.50 1 1 0
.......................................................................................................TGTGCAAATCCATGCAAAATT............................................................ 21 1 2 0.50 1 1 0
............................................................................................................AAATCCATGCAAAACTGA.......................................................... 18 0 4 0.50 2 2 0
.......................................................................................................TGTGCAAATCCATGCAAAACTGAGA........................................................ 25 2 2 0.50 1 0 1
.......................................................................................................GGTGCAAATCCATGCAAAACTG........................................................... 22 1 2 0.50 1 0 1
.......................................................................................................GGCGCAAATCCATGCAAAACTGAA......................................................... 24 3 2 0.50 1 0 1
......................................................................................................ATGTGCAAATCCATGCAAAACTGAA......................................................... 25 2 2 0.50 1 0 1
........................................................................................................GCGCAAATCCATGCAAAACT............................................................ 20 1 2 0.50 1 1 0
.......................................................................................................TGTGAAAATCCATGCAAAACTG........................................................... 22 1 2 0.50 1 1 0
.......................................................................................................TGTGCAAATCCATCCAAAACT............................................................ 21 1 2 0.50 1 1 0
.......................................................................................................TGGGCAAATCCATGCAAAACTGA.......................................................... 23 1 2 0.50 1 0 1
.......................................................................................................TGTGCAAATCCATGCAA................................................................ 17 0 4 0.50 2 1 1
.......................................................................................................TGTGCAAATCCATGCAAAACTGAATTT...................................................... 27 2 2 0.50 1 0 1
.......................................................................................................TGTGCAAATCCATGCAAAACCGA.......................................................... 23 1 2 0.50 1 0 1
.....................................................................................................GATGTGCAACTCCATGCAAAACT............................................................ 23 2 2 0.50 1 1 0
.......................................................................................................TGCGCAAATCCATGCAAAACT............................................................ 21 1 2 0.50 1 0 1
.......................................................................................................TGTTCAAATCCATGCAAAACTGA.......................................................... 23 1 2 0.50 1 0 1
........................................................................................................GTGTAAATCCATGCAAAACT............................................................ 20 1 2 0.50 1 1 0
......................................................................................................GTGTGCAAATCCATGCAAAACT............................................................ 22 1 2 0.50 1 1 0
........................................................................................................GTGCAAATCCATGCAAAACTGAAT........................................................ 24 1 2 0.50 1 1 0
........................................................................................................GTGCAAATCCATGAAAAACT............................................................ 20 1 3 0.33 1 1 0
.......................................................................................................CGTGCAAATCCATGCAAAAC............................................................. 20 1 3 0.33 1 1 0
........................................................................................................GTGCAAATCCATGCAAAAC............................................................. 19 0 3 0.33 1 0 1
.......................................................................................................TGTACAAATCCATGCAAAACT............................................................ 21 1 3 0.33 1 0 1
......................................................................................................ATGGGCAAATCCATGCAAAACT............................................................ 22 2 4 0.25 1 0 1
......................................................................................................ATGTGCAAATCCATGCAAAAC............................................................. 21 1 4 0.25 1 1 0
......................................................................................................ATGAGCAAATCCATGCAAAACT............................................................ 22 2 4 0.25 1 0 1
.............................................................................................................AATCCATGCAAAACTGA.......................................................... 17 0 4 0.25 1 1 0
.......................................................................................................TGCGCAAATCCATGCAAAAC............................................................. 20 1 4 0.25 1 0 1
.......................................................................................................TGTGCACATCCATGCAAAACT............................................................ 21 1 5 0.20 1 0 1
.......................................................................................................AGTGCAAATCCATGCAAAAC............................................................. 20 1 5 0.20 1 0 1
.......................................................................................................TGTGCAAATCCATGCAAAC.............................................................. 19 1 6 0.17 1 0 1
.......................................................................................................TGTGCAAATCCATGCAAAT.............................................................. 19 1 12 0.08 1 1 0
......................................................................................................ATGTGCAAATCCATGCAAA............................................................... 19 1 12 0.08 1 0 1
.......................................................................................................TATGTAAATCCATGCAAAACT............................................................ 21 2 14 0.07 1 0 1
......................................................................................................ATGTGCAAATCCATGCAA................................................................ 18 1 20 0.05 1 0 1

Anti-sense strand reads

GACCCTATTACTCAGAGGACAACTACCGGTCCTACAAGTCTTAGTTACGATGAGTGTTAATCAAAACGTCCAAACGTAAAGTCGCATATGGACATATGTACCGACACGTTTAGGTACGTTTTGACTAACACTAGTGCACACGAAAGATGTAAAACACCTGTGGAGGCACATGTATGGTCGTAAG
***********************************...((((...((((...(((((((((((((((((((((((((...(((((((((....)))))...)))))))))).)).)))))))))))))))))....))))...))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 01:03 AM