ID:

ocu-mir-19b-1

 Coordinate:

chr8:93068292-93068378 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.1 -38.9 -38.5
mature
  1. chr8:93068345-93068365 +
  2. chrX:108518505-108518525 -
star

Sense Strand Reads

TGTAGAACTCCAACTTCGGCTGTCGCGCAATCAAACTGTCCTGTTATGAACACTGTTCTATGGTTAGTTTTGCAGGTTTGCATCCAGCTGTGTGATATTCTGCTGTGCAAATCCATGCAAAACTGACTGTGGTGGTGAAAAGTCTGTAGAAAAGTAAGGGAAAATCAAACCCCTTTCTACACAGGTT
**************************************************((((...(((((((((((((((((((((((((..((((.............)))))))))).)).))))))))))))))))).))))..************************************************ 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
.......................................................................................................TGTGCAAATCCATGCAAAACT............................................................... 21 0 2 134.00 268 206 62
.......................................................................................................TGTGCAAATCCATGCAAAACTGA............................................................. 23 0 2 52.00 104 51 53
.......................................................................................................TGTGCAAATCCATGCAAAACTG.............................................................. 22 0 2 33.50 67 31 36
.......................................................................................................TGTGCAAATCCATGCAAAAC................................................................ 20 0 3 10.00 30 14 16
........................................................................................................GTGCAAATCCATGCAAAACT............................................................... 20 0 2 9.00 18 17 1
.......................................................................................................TGTGCAAATCCATGCAAAA................................................................. 19 0 3 7.33 22 7 15
.................................................................AGTTTTGCAGGTTTGCATCC...................................................................................................... 20 0 1 6.00 6 5 1
.......................................................................................................TGTGCAAATCCATGCAAAACTGT............................................................. 23 1 2 5.50 11 9 2
.......................................................................................................TGTGCAAATCCATGCA.................................................................... 16 0 9 3.56 32 32 0
........................................................................................................GTGCAAATCCATGCAAAACTGA............................................................. 22 0 2 3.50 7 3 4
......................................................................................................ATGTGCAAATCCATGCAAAACT............................................................... 22 1 2 3.50 7 2 5
.................................................................AGTTTTGCAGGTTTGCATCCA..................................................................................................... 21 0 1 3.00 3 0 3
.......................................................................................................TGTGCAAATCCATGCAAAACTGAA............................................................ 24 1 2 3.00 6 1 5
.................................................................AGTTTTGCAGGTTTGCATAC...................................................................................................... 20 1 1 3.00 3 3 0
.................................................................AGTTTTGCAGGTTTGCATC....................................................................................................... 19 0 1 2.00 2 2 0
........................................................................................................GTGCAAATCCATGCAAAACTG.............................................................. 21 0 2 1.50 3 0 3
......................................................................................................ATGTGCAAATCCATGCAAAACTGA............................................................. 24 1 2 1.50 3 0 3
.........................................................................................................TGCAAATCCATGCAAAA................................................................. 17 0 3 1.33 4 4 0
.................................................................AGTTTTGCAGGTTTGCATCCAGC................................................................................................... 23 0 1 1.00 1 1 0
.......................................................................................................TGTGCAAATCCATGCAAA.................................................................. 18 0 4 1.00 4 0 4
.......................................................................................................TGGGCAAATCCATGCAAAACT............................................................... 21 1 3 1.00 3 2 1
..................................................................GTTTTGCAGGTTTGCATC....................................................................................................... 18 0 1 1.00 1 1 0
.................................................................AGTTTTGCAGGTTTGCATCCAGT................................................................................................... 23 1 1 1.00 1 1 0
.......................................................................................................TGAGCAAATCCATGCAAAACT............................................................... 21 1 2 1.00 2 1 1
......................................................................................................ATGTGCAAATCCATGCAAAACTG.............................................................. 23 1 2 1.00 2 2 0
........................................................................................................GTGCAAATCCATGCAAAA................................................................. 18 0 3 0.67 2 0 2
.........................................................................................................TGCAAATCCATGCAAAACTGTG............................................................ 22 2 6 0.67 4 4 0
.......................................................................................................TGGGCAAATCCATGCAAAACTGA............................................................. 23 1 2 0.50 1 0 1
.......................................................................................................TGCGCAAATCCATGCAAAACT............................................................... 21 1 2 0.50 1 0 1
.......................................................................................................TGTGCAAATCCATGCAAAACTGAATTT......................................................... 27 2 2 0.50 1 0 1
.......................................................................................................TGTTCAAATCCATGCAAAACTGA............................................................. 23 1 2 0.50 1 0 1
.......................................................................................................GGCGCAAATCCATGCAAAACTGAA............................................................ 24 3 2 0.50 1 0 1
......................................................................................................GTGTGCAAATCCATGCAAAACT............................................................... 22 1 2 0.50 1 1 0
......................................................................................................ATGTGCAAATCCATGCAAAACTGAA............................................................ 25 2 2 0.50 1 0 1
.......................................................................................................TGTGCAAATCCATGCAAAACTGAGA........................................................... 25 2 2 0.50 1 0 1
.....................................................................................................GATGTGCAACTCCATGCAAAACT............................................................... 23 2 2 0.50 1 1 0
.......................................................................................................TGTGAAAATCCATGCAAAACTG.............................................................. 22 1 2 0.50 1 1 0
...................................................................................................GTCCTGTGCAAATCCATGCAAAAC................................................................ 24 2 2 0.50 1 0 1
.......................................................................................................TGTGCAAATCTATGCAAAACTGAC............................................................ 24 1 2 0.50 1 1 0
.......................................................................................................TGTGCAACTCCATGCAAAACT............................................................... 21 1 2 0.50 1 1 0
.......................................................................................................TGTGCAAATCCATTCAAAACTGA............................................................. 23 1 2 0.50 1 0 1
........................................................................................................GTGTAAATCCATGCAAAACT............................................................... 20 1 2 0.50 1 1 0
............................................................................................................AAATCCATGCAAAACTGA............................................................. 18 0 4 0.50 2 2 0
.......................................................................................................TGTGCAAATCCATGCAAAATT............................................................... 21 1 2 0.50 1 1 0
.......................................................................................................TGTGCAAATCCATCCAAAACT............................................................... 21 1 2 0.50 1 1 0
.......................................................................................................TGTGCAAATCCATGCAAAACCGA............................................................. 23 1 2 0.50 1 0 1
.......................................................................................................GGTGCAAATCCATGCAAAACTG.............................................................. 22 1 2 0.50 1 0 1
........................................................................................................GTGCAAATCCATGCAAAACTGAAT........................................................... 24 1 2 0.50 1 1 0
.......................................................................................................TGTGCAAATCCATGCAA................................................................... 17 0 4 0.50 2 1 1
........................................................................................................GCGCAAATCCATGCAAAACT............................................................... 20 1 2 0.50 1 1 0
.......................................................................................................TGTACAAATCCATGCAAAACT............................................................... 21 1 3 0.33 1 0 1
.......................................................................................................CGTGCAAATCCATGCAAAAC................................................................ 20 1 3 0.33 1 1 0
........................................................................................................GTGCAAATCCATGAAAAACT............................................................... 20 1 3 0.33 1 1 0
........................................................................................................GTGCAAATCCATGCAAAAC................................................................ 19 0 3 0.33 1 0 1
.............................................................................................................AATCCATGCAAAACTGA............................................................. 17 0 4 0.25 1 1 0
......................................................................................................ATGTGCAAATCCATGCAAAAC................................................................ 21 1 4 0.25 1 1 0
......................................................................................................ATGGGCAAATCCATGCAAAACT............................................................... 22 2 4 0.25 1 0 1
.......................................................................................................TGCGCAAATCCATGCAAAAC................................................................ 20 1 4 0.25 1 0 1
......................................................................................................ATGAGCAAATCCATGCAAAACT............................................................... 22 2 4 0.25 1 0 1
.......................................................................................................AGTGCAAATCCATGCAAAAC................................................................ 20 1 5 0.20 1 0 1
.......................................................................................................TGTGCACATCCATGCAAAACT............................................................... 21 1 5 0.20 1 0 1
.......................................................................................................TGTGCAAATCCATGCAAAC................................................................. 19 1 6 0.17 1 0 1
......................................................................................................ATGTGCAAATCCATGCAAA.................................................................. 19 1 12 0.08 1 0 1
.......................................................................................................TGTGCAAATCCATGCAAAT................................................................. 19 1 12 0.08 1 1 0
.......................................................................................................TATGTAAATCCATGCAAAACT............................................................... 21 2 14 0.07 1 0 1
......................................................................................................ATGTGCAAATCCATGCAA................................................................... 18 1 20 0.05 1 0 1

Anti-sense strand reads

ACATCTTGAGGTTGAAGCCGACAGCGCGTTAGTTTGACAGGACAATACTTGTGACAAGATACCAATCAAAACGTCCAAACGTAGGTCGACACACTATAAGACGACACGTTTAGGTACGTTTTGACTGACACCACCACTTTTCAGACATCTTTTCATTCCCTTTTAGTTTGGGGAAAGATGTGTCCAA
************************************************((((...(((((((((((((((((((((((((..((((.............)))))))))).)).))))))))))))))))).))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:49 AM