ID:

ocu-mir-19a

 Coordinate:

chr8:93067974-93068055 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-37.4 -37.3 -37.0

Sense Strand Reads

CCAATAATTCAAGTCAAGCAAGTATATAGGTGTGTTAATAGTTTTTGTTTGCAGTCTTCTGTTAGTTTTGCATAGTTGCACTACAAGAAGAATGTAGTTGTGCAAATCTATGCAAAACTGATGGTGGCCTGCTATTTCCTTCAAGTGATTTTTTTATTTTATTAATTTTTTTTTTTACTAAT
************************************************..((((.((.(((((((((((((((((((((((((((.......))))...))))))..))))))))))))))))).)).))))..************************************************ 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
..................................................................................................TGTGCAAATCTATGCAAAACT............................................................... 21 0 1 32.00 32 26 6
..................................................................................................TGTGCAAATCTATGCAAAACTGA............................................................. 23 0 1 27.00 27 14 13
.................................................................................................TTGTGCAAATCTATGCAAAACT............................................................... 22 0 1 14.00 14 12 2
..................................................................................................TGTGCAAATCTATGCAAAACTG.............................................................. 22 0 1 14.00 14 3 11
...............................................................AGTTTTGCATAGTTGCACTACT................................................................................................. 22 1 1 13.00 13 13 0
..................................................................................................TGTGCAAATCTATGCAAAAC................................................................ 20 0 1 12.00 12 11 1
...............................................................AGTTTTGCATAGTTGCACTA................................................................................................... 20 0 1 11.00 11 11 0
..................................................................................................TGTGCAAATCTATGCAAAACTGAT............................................................ 24 0 1 6.00 6 6 0
..................................................................................................TGTGCAAATCTATGCAAAA................................................................. 19 0 1 5.00 5 4 1
..............................................................TCGTTTTGCATAGTTGCACT.................................................................................................... 20 1 1 4.00 4 4 0
.................................................................................................ATGTGCAAATCTATGCAAAACT............................................................... 22 1 1 4.00 4 4 0
...............................................................AGTTTTGCATAGTTGCACTAC.................................................................................................. 21 0 1 4.00 4 4 0
.................................................................................................TTGTGCAAATCTATGCAAAAC................................................................ 21 0 1 3.00 3 3 0
................................................................GTTTTGCATAGTTGCACTAC.................................................................................................. 20 0 1 3.00 3 3 0
...............................................................AGTTTTGCATAGTTGCACT.................................................................................................... 19 0 1 2.00 2 2 0
...............................................................AGTTTTGCATAGTTGCACTAT.................................................................................................. 21 1 1 2.00 2 2 0
...............................................................AGTTTTGCATAGTTGCAC..................................................................................................... 18 0 1 1.00 1 1 0
.................................................................................................GTGTGCAAATCTATGCAAAACTGA............................................................. 24 1 1 1.00 1 0 1
..................................................................................................TGTGCAAATCTATGCAAAACTGAAG........................................................... 25 1 1 1.00 1 0 1
.................................................................................................ATGTGCAAATCTATGCAAAACTG.............................................................. 23 1 1 1.00 1 0 1
.................................................................................................TTGTGCAAATCTATGCAAAACTGA............................................................. 24 0 1 1.00 1 0 1
...............................................................AGCTTTGCATAGTTGCACTACT................................................................................................. 22 2 1 1.00 1 1 0
..................................................................................................TGTGCAAATCTATGCAAAACTGATA........................................................... 25 1 1 1.00 1 0 1
..................................................................................................TGGGCAAATCTATGCAAAACT............................................................... 21 1 1 1.00 1 1 0
..................................................................................................TGTGCAAATCTATGCAAAACTGAA............................................................ 24 1 1 1.00 1 0 1
.................................................................................................ATGTGCAAATCTATGCAAAACTGATA........................................................... 26 2 1 1.00 1 0 1
.................................................................................................TTGTGCAAATCTATGCAAAACTG.............................................................. 23 0 1 1.00 1 0 1
..................................................................................................TGTGCAAATCTATGCAAAACTGT............................................................. 23 1 1 1.00 1 0 1
.................................................................................................ATGTGCAAATCTATGCAAAACTGA............................................................. 24 1 1 1.00 1 0 1
...................................................................................................GTGCAAATCTATGCAAAACTGA............................................................. 22 0 1 1.00 1 0 1
...................................................................................................GTGCAAATCTATGCAAAACTGT............................................................. 22 1 1 1.00 1 1 0
..................................................................................................TGTGCAAATCTATGCAAAACTGAC............................................................ 24 1 2 0.50 1 1 0
.......................................................................................................AAATCTATGCAAAACTGA............................................................. 18 0 2 0.50 1 1 0
..................................................................................................TGTGCAAATCTATGCAAA.................................................................. 18 0 2 0.50 1 0 1

Anti-sense strand reads

GGTTATTAAGTTCAGTTCGTTCATATATCCACACAATTATCAAAAACAAACGTCAGAAGACAATCAAAACGTATCAACGTGATGTTCTTCTTACATCAACACGTTTAGATACGTTTTGACTACCACCGGACGATAAAGGAAGTTCACTAAAAAAATAAAATAATTAAAAAAAAAAATGATTA
************************************************..((((.((.(((((((((((((((((((((((((((.......))))...))))))..))))))))))))))))).)).))))..************************************************ 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:49 AM