ID:

ocu-mir-199a-2

 Coordinate:

chr13:20628386-20628495 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.1 -40.1 -40.1
mature
  1. chr13:20628455-20628475 +
  2. chrUn0216:202021-202041 +
star
  1. chr13:20628416-20628437 +
  2. chrUn0216:201980-202001 +

Sense Strand Reads

AGGAAGGGAGGCTTTTCCCAAGGACCAGGAGAGGATTTTAAGTACATAGATGGAAGCTTCTGGAGATCCTGCTCCGTCGCCCCAGTGTTCAGACTACCTGTTCAGGACAATGCCGTTGTACAGTAGTCTGCACATTGGTTAGACTGGGCAAGGGAGAGCAACGCCACGGACTGCTGGGGACAAACAGAATTTGCTGTGTCCAAGGAGAAG
*****************************************************************.((((((((.(((...(((((((.((((((((.(((.((((......))..)).))))))))))).)))))))...))).)))).)))).******************************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
.......................................................................................................................ACAGTAGTCTGCACATTGGTT...................................................................... 21 0 2 1085.00 2170 1973 197
.......................................................................................................................ACAGTAGTCTGCACATTGGT....................................................................... 20 0 2 911.50 1823 1560 263
......................................................................................................................TACAGTAGTCTGCACATTGGTT...................................................................... 22 0 2 206.50 413 411 2
......................................................................................................................TACAGTAGTCTGCACATTGGT....................................................................... 21 0 2 193.50 387 376 11
................................................................................CCCAGTGTTCAGACTACCTGTT............................................................................................................ 22 0 2 191.50 383 380 3
.......................................................................................................................ACAGTAGTCTGCACATTGGTTA..................................................................... 22 0 2 122.00 244 221 23
......................................................................................................................AACAGTAGTCTGCACATTGGTT...................................................................... 22 1 2 102.50 205 203 2
.......................................................................................................................ACAGTAGTCTGCACATTGG........................................................................ 19 0 2 79.00 158 67 91
........................................................................................................................CAGTAGTCTGCACATTGGTT...................................................................... 20 0 2 63.00 126 118 8
.......................................................................................................................ACAGTAGTCTGCACATTGGTTT..................................................................... 22 1 2 63.00 126 124 2
................................................................................CCCAGTGTTTAGACTATCTGTT............................................................................................................ 22 2 2 60.00 120 118 2
................................................................................CCCAGTGTTCAGACTACCTGT............................................................................................................. 21 0 2 52.00 104 88 16
........................................................................................................................CAGTAGTCTGCACATTGGT....................................................................... 19 0 2 36.00 72 67 5
................................................................................CCCAGTGTTTAGACTACCTGT............................................................................................................. 21 1 2 27.50 55 55 0
.....................................................................................................................ATACAGTAGTCTGCACATTGGTT...................................................................... 23 1 2 25.00 50 50 0
................................................................................CCCAGTGTTCAGACTACCTG.............................................................................................................. 20 0 2 24.00 48 26 22
.......................................................................................................................ACAGTAGTCTGCACATTGGTTAT.................................................................... 23 1 2 22.50 45 42 3
................................................................................CCCAGTGTTTAGACTACCTG.............................................................................................................. 20 1 2 16.50 33 33 0
.........................................................................................................................AGTAGTCTGCACATTGGTT...................................................................... 19 0 2 13.00 26 25 1
......................................................................................................................AACAGTAGTCTGCACATTGGTTT..................................................................... 23 2 2 13.00 26 25 1
......................................................................................................................TACAGTAGTCTGCACATTGGTTT..................................................................... 23 1 2 12.50 25 25 0
.......................................................................................................................ACAGTAGTCTGCACATTGGTTAA.................................................................... 23 1 2 9.00 18 17 1
................................................................................CCCAGTGTTTAGACTACCTGTT............................................................................................................ 22 1 2 8.50 17 17 0
................................................................................CCCAGTGTTTAGACTATCTGT............................................................................................................. 21 2 2 8.00 16 7 9
.......................................................................................................................ACAGTAGTCTGCACATTG......................................................................... 18 0 2 8.00 16 3 13
......................................................................................................................TACAGTAGTCTGCACATTGG........................................................................ 20 0 2 7.50 15 4 11
.......................................................................................................................ACAGCAGTCTGCACATTGGTT...................................................................... 21 1 2 6.50 13 12 1
................................................................................CCCAGTGTTTAGACTATCTGTTC........................................................................................................... 23 2 2 6.50 13 13 0
...............................................................................ACCCAGTGTTCAGACTACCTGT............................................................................................................. 22 1 2 6.00 12 0 12
...................................................................................AGTGTTCAGACTACCTGTT............................................................................................................ 19 0 2 5.50 11 11 0
..........................................................................................................................GTAGTCTGCACATTGGTT...................................................................... 18 0 2 5.50 11 11 0
.......................................................................................................................ACAGTAGTCTGCACATTGGC....................................................................... 20 1 2 4.50 9 8 1
.................................................................................CCAGTGTTTAGACTATCTGTT............................................................................................................ 21 2 4 4.50 18 18 0
.......................................................................................................................ACAGTATTCTGCACATTGGTT...................................................................... 21 1 2 4.50 9 9 0
.........................................................................................................................AGTAGTCTGCACATTGGT....................................................................... 18 0 2 4.50 9 9 0
.......................................................................................................................ACAGTAGTCTGCACATT.......................................................................... 17 0 2 4.00 8 8 0
.......................................................................................................................ACAGAAGTCTGCACATTGGT....................................................................... 20 1 2 4.00 8 7 1
.......................................................................................................................ACAGTAGTCTGCACATTGGTTG..................................................................... 22 1 2 4.00 8 8 0
.......................................................................................................................ACAGTAGGCTGCACATTGGT....................................................................... 20 1 2 4.00 8 5 3
.......................................................................................................................ACAGTAGTCTGCACATTGGTTTT.................................................................... 23 2 2 3.50 7 7 0
......................................................................................................................AACAGTAGTCTGCACATTGGTTA..................................................................... 23 1 2 3.50 7 6 1
................................................................................CCCAGTGTTCAGACTACCTGTTA........................................................................................................... 23 1 2 3.50 7 7 0
.......................................................................................................................ACAGTAGTCTGCATATTGGTT...................................................................... 21 1 2 3.00 6 6 0
......................................................................................................................AACAGTAGTCTGCACATTGGT....................................................................... 21 1 2 3.00 6 1 5
........................................................................................................................CAGTAGTCTGCACATTGGTTA..................................................................... 21 0 2 3.00 6 4 2
................................................................................CCCAGTGTTCAGACTACCTGTTC........................................................................................................... 23 0 2 3.00 6 6 0
..........................................................................................................................GTAGTCTGCACATTGGT....................................................................... 17 0 2 3.00 6 5 1
.................................................................................CCAGTGTTCAGACTACCTGTT............................................................................................................ 21 0 2 3.00 6 6 0
........................................................................................................................CAGTAGTCTGCACATTGGTTT..................................................................... 21 1 2 2.50 5 5 0
.......................................................................................................................ACAGGAGTCTGCACATTGGT....................................................................... 20 1 2 2.50 5 4 1
.......................................................................................................................ACAGTAGACTGCACATTGGT....................................................................... 20 1 2 2.50 5 4 1
.......................................................................................................................ACAGTAGTCTGCACATTGGCT...................................................................... 21 1 2 2.50 5 5 0
.......................................................................................................................ACAGAAGTCTGCACATTGGTT...................................................................... 21 1 2 2.50 5 4 1
.......................................................................................................................ACAGGAGTCTGCACATTGGTT...................................................................... 21 1 2 2.50 5 4 1
.......................................................................................................................ACAGTAGACTGCACATTGGTT...................................................................... 21 1 2 2.50 5 3 2
......................................................................................GTTCAGACTACCTGTT............................................................................................................ 16 0 3 2.33 7 7 0
.....................................................................................................................AAACAGTAGTCTGCACATTGGTT...................................................................... 23 2 3 2.33 7 7 0
.......................................................................................................................ACAGCAGTCTGCACATTGGT....................................................................... 20 1 2 2.00 4 4 0
.......................................................................................................................ACAGTAGTCTGCCCATTGGT....................................................................... 20 1 2 2.00 4 2 2
.......................................................................................................................ACAGTAGTCTGCACATTGGA....................................................................... 20 1 2 2.00 4 4 0
......................................................................................................................TACAGTAGTCTGCACATTGGTTA..................................................................... 23 0 2 2.00 4 4 0
........................................................................................................................CAGTAGTCTGCACATTGG........................................................................ 18 0 2 2.00 4 1 3
.......................................................................................................................ACAGTAGTCTGCACATTGTTT...................................................................... 21 1 2 2.00 4 4 0
................................................................................CCCAGTGTTCAGACTACCTGTTT........................................................................................................... 23 1 2 2.00 4 4 0
..................................................................................CAGTGTTCAGACTACCTGTT............................................................................................................ 20 0 2 2.00 4 4 0
......................................................................................................................AACAGTAGTCTGCACATTGGTTAT.................................................................... 24 2 2 2.00 4 4 0
.......................................................................................................................ACAGTAGTCTGCACATTGGTTGT.................................................................... 23 2 2 2.00 4 4 0
.......................................................................................................................ACAGTAGGCTGCACATTGGTT...................................................................... 21 1 2 1.50 3 3 0
..........................................................................................................................GTAGTCTGCACATTGGTTA..................................................................... 19 0 2 1.50 3 2 1
................................................................................CCCAGTGTTCAGACTACCT............................................................................................................... 19 0 2 1.50 3 2 1
.......................................................................................................................ACAGTAGTCTGCACAT........................................................................... 16 0 2 1.50 3 3 0
.......................................................................................................................ACAGTAGCCTGCACATTGGTT...................................................................... 21 1 2 1.50 3 2 1
......................................................................................................................TACAGTAGTCTGCACATTGGTTAA.................................................................... 24 1 2 1.50 3 3 0
.......................................................................................................................ACAGTAGTCCGCACATTGGTT...................................................................... 21 1 2 1.50 3 3 0
...............................................................................ACCCAGTGTTCAGACTACCTG.............................................................................................................. 21 1 2 1.50 3 0 3
......................................................................................................................TACAGTATTCTGCACATTGGT....................................................................... 21 1 2 1.50 3 3 0
............................................................................................................................AGTCTGCACATTGGTTAA.................................................................... 18 1 4 1.50 6 6 0
............................................................................................................................AGTCTGCACATTGGTT...................................................................... 16 0 6 1.33 8 7 1
................................................................................CCCAGTGTTTAGACTATCTG.............................................................................................................. 20 2 6 1.33 8 0 8
......................................................................................................................AACAGTAGTCTGCACATTTGTT...................................................................... 22 2 3 1.33 4 4 0
................................................................................CCCAGGGTTCAGACTACCTGTT............................................................................................................ 22 1 2 1.00 2 2 0
......................................................................................................................AACAGTAGTCTGCACATTGG........................................................................ 20 1 2 1.00 2 0 2
......................................................................................................................TACAGTAGTCTGCACATTGCTT...................................................................... 22 1 2 1.00 2 2 0
......................................................................................................................TACAGTAGTCTGCACATTGGG....................................................................... 21 1 2 1.00 2 2 0
.......................................................................................................................ACAGTAGTCTGCGCATTGGTT...................................................................... 21 1 2 1.00 2 2 0
................................................................................CCCAGTGCTCAGACTACCTGTT............................................................................................................ 22 1 2 1.00 2 1 1
.......................................................................................................................ACAGTAGTCTGCAAATTGGT....................................................................... 20 1 2 1.00 2 2 0
......................................................................................................................AACAGTAGTCTGCACATTGGTTAA.................................................................... 24 2 2 1.00 2 2 0
......................................................................................................................TACAGTAGTCTGCACATTGGTTCT.................................................................... 24 2 2 1.00 2 2 0
.......................................................................................................................ACAGTAGTCTGCATATTGGT....................................................................... 20 1 2 1.00 2 2 0
.......................................................................................................................ACAGTAGTCCGCACATTGGT....................................................................... 20 1 2 1.00 2 1 1
.......................................................................................................................ACAGTAATCTGCACATTGGTT...................................................................... 21 1 2 1.00 2 2 0
...................................................................................AGTGTTCAGACTACCTGTTT........................................................................................................... 20 1 2 1.00 2 2 0
..................................................................................CAGTGTTTAGACTACCTG.............................................................................................................. 18 1 2 1.00 2 2 0
......................................................................................................................TACAGTAGTCTGCACATTGGTTAT.................................................................... 24 1 2 1.00 2 2 0
...............................................................................ACCCAGTGTTTAGACTATCTGT............................................................................................................. 22 3 11 1.00 11 0 11
................................................................................CCCAGTGTTCAGACTAC................................................................................................................. 17 0 2 1.00 2 2 0
......................................................................................................................TACAGTAGTCTGCACATT.......................................................................... 18 0 2 1.00 2 1 1
......................................................................................................................TACAGTAGTCTGCACATTGGTAT..................................................................... 23 2 2 1.00 2 2 0
........................................................................................................................CAGGAGTCTGCACATTGGTT...................................................................... 20 1 2 1.00 2 2 0
................................................................................CCCAGTGTTCAGACTACC................................................................................................................ 18 0 2 1.00 2 2 0
................................................................................CCCAGTGTTTAGACTACCTGTTC........................................................................................................... 23 1 2 1.00 2 2 0
.......................................................................................................................ACAGTAGTCTGCTCATTGGTT...................................................................... 21 1 2 1.00 2 2 0
.......................................................................................................................ACAGTAGGCTGCACATTGGTTA..................................................................... 22 1 2 1.00 2 2 0
................................................................................CCCGGTGTTCAGACTACCTGTT............................................................................................................ 22 1 2 1.00 2 2 0
.......................................................................................................................ACAGTAGTCTGCACATTGGTA...................................................................... 21 1 2 1.00 2 0 2
................................................................................CCCAGTGTTCAGACTACCTGTTCT.......................................................................................................... 24 1 2 1.00 2 2 0
.......................................................................................................................ACACTAGTCTGCACATTGGTT...................................................................... 21 1 2 1.00 2 1 1
.......................................................................................................................ACAGTAGTCTGCACATTGGGT...................................................................... 21 1 2 1.00 2 1 1
.......................................................................................................................ACAGTAGTGTGCACATTGGTT...................................................................... 21 1 2 1.00 2 2 0
......................................................................................................................TACAGTAGTCTGCACATTGGA....................................................................... 21 1 2 1.00 2 2 0
......................................................................................................................TACAGTAGTCTGCATATTGGTT...................................................................... 22 1 2 1.00 2 2 0
.......................................................................................................................ACAGTAGCCTGCACATTGGT....................................................................... 20 1 3 1.00 3 2 1
...........................................................................................................................TAGTCTGCACATTGG........................................................................ 15 0 7 0.71 5 5 0
........................................................................................................................CAGTAGTCTGCACATTGGC....................................................................... 19 1 3 0.67 2 2 0
......................................................................................................................AACAGGAGTCTGCACATTGGTT...................................................................... 22 2 3 0.67 2 2 0
......................................................................................................................TACAGTAGTCTGCAC............................................................................. 15 0 5 0.60 3 3 0
.......................................................................................................................ACAGTAGTCTGCACCTTGGTT...................................................................... 21 1 2 0.50 1 1 0
................................................................................CCCCGTGTTCAGACTACCTGTT............................................................................................................ 22 1 2 0.50 1 1 0
.......................................................................................................................TCAGTAGTCTGCACATTGGTT...................................................................... 21 1 2 0.50 1 0 1
........................................................................................................................CAGTAGTCTGCACATTGGTTAT.................................................................... 22 1 2 0.50 1 1 0
.....................................................................................................................ATACAGTAGTCTGCACATTGG........................................................................ 21 1 2 0.50 1 0 1
.......................................................................................................................ACAGTAGTCGGCACATTGGT....................................................................... 20 1 2 0.50 1 1 0
.................................................................................................................AGCTCTACAGTAGTCTGCACATTGG........................................................................ 25 3 2 0.50 1 0 1
......................................................................................................................TACAGTAGGCTGCACATTGGT....................................................................... 21 1 2 0.50 1 1 0
.......................................................................................................................ACAGTAGTATGCACATTGGT....................................................................... 20 1 2 0.50 1 1 0
.......................................................................................................................ACAGGAGTCTGCACATTGGTTA..................................................................... 22 1 2 0.50 1 1 0
........................................................................................................................CAGTAGTCTGCACATCGGTT...................................................................... 20 1 2 0.50 1 1 0
......................................................................................................................TACAGTAGTCTACACATTGGT....................................................................... 21 1 2 0.50 1 1 0
.......................................................................................................................ACAGTAGCCTGCACATTGGTTAT.................................................................... 23 2 2 0.50 1 1 0
.......................................................................................................................ACAGTATTCTGCACATTGGT....................................................................... 20 1 2 0.50 1 1 0
.......................................................................................................................ACAGTAGTCTGCACATTGGGTT..................................................................... 22 2 2 0.50 1 1 0
.......................................................................................................................ACAGTTGTCTGCACATTGGTT...................................................................... 21 1 2 0.50 1 1 0
.......................................................................................................................ACAGTCGTCTGCACATTGGTT...................................................................... 21 1 2 0.50 1 0 1
......................................................................................................................TACAGTAGTCTGCACATAGGTT...................................................................... 22 1 2 0.50 1 1 0
.......................................................................................................................ACAGTAGTCTGCACATGGGT....................................................................... 20 1 2 0.50 1 1 0
........................................................................................................................CAGTAGTCTGCACATGGGTT...................................................................... 20 1 2 0.50 1 1 0
.......................................................................................................................ACAGTAGACTGCACATTGGTTA..................................................................... 22 1 2 0.50 1 0 1
.......................................................................................................................ACAGTAGTATGCACATTGGTT...................................................................... 21 1 2 0.50 1 1 0
...........................................................................................................................TAGTCTGCACATTGGT....................................................................... 16 0 4 0.50 2 2 0
......................................................................................................................AACAGTAGTCTGCACATTCGTT...................................................................... 22 2 2 0.50 1 1 0
......................................................................................................................AACAGAAGTCTGCACATTGGTT...................................................................... 22 2 2 0.50 1 1 0
.....................................................................................................................TTACAGTAGTCTGCACATTGGT....................................................................... 22 1 2 0.50 1 1 0
.......................................................................................................................ACAGTAGTCTGCACATTGGG....................................................................... 20 1 2 0.50 1 1 0
......................................................................................................................TACAGTAGCCTGCACATTGGT....................................................................... 21 1 2 0.50 1 1 0
................................................................................CCCAGAGTTCAGACTACCTGTT............................................................................................................ 22 1 2 0.50 1 1 0
........................................................................................................................CAGTAGTCCGCACATTGGTT...................................................................... 20 1 2 0.50 1 1 0
................................................................................CCCGGTGTTTAGACTACCTG.............................................................................................................. 20 2 2 0.50 1 1 0
........................................................................................................................CAGTAGTCTGCACATTCGT....................................................................... 19 1 2 0.50 1 1 0
..................................................................................CAGTGTTCAGCCTACCTGTT............................................................................................................ 20 1 2 0.50 1 1 0
.......................................................................................................................CCAGTAGTCTGCACATTGGTTA..................................................................... 22 1 2 0.50 1 1 0
.......................................................................................................................ACAGAAGTCTGCACATTGGTTA..................................................................... 22 1 2 0.50 1 1 0
......................................................................................................................TACAGTAGTCTGCACATTG......................................................................... 19 0 2 0.50 1 0 1
.......................................................................................................................ACAGTAGTCTGCACATTGTTTA..................................................................... 22 1 2 0.50 1 0 1
.......................................................................................................................ACAGTAGTGTGCACATTGGT....................................................................... 20 1 2 0.50 1 1 0
......................................................................................................................TACAGTAGTCTGCACATTGGTTC..................................................................... 23 1 2 0.50 1 1 0
.......................................................................................................................ACAGTAGTCTGCACATTGCTT...................................................................... 21 1 2 0.50 1 1 0
.......................................................................................................................ACACTAGTCTGCACATTGG........................................................................ 19 1 2 0.50 1 0 1
......................................................................................................................TACAATAGTCTGCACATTGGTT...................................................................... 22 1 2 0.50 1 1 0
..........................................................................................................................GTAGTCTGCACATTGGTTAT.................................................................... 20 1 2 0.50 1 1 0
.......................................................................................................................ACAGTAGTCTGCACATTGGTC...................................................................... 21 1 2 0.50 1 0 1
.......................................................................................................................AAAGTAGTCGGCACATTGGT....................................................................... 20 2 2 0.50 1 1 0
.......................................................................................................................ACAGTAGGCTGCACATTGGTTT..................................................................... 22 2 4 0.50 2 2 0
.......................................................................................................................AAAGTAGTCTGCACATTGGT....................................................................... 20 1 2 0.50 1 1 0
.......................................................................................................................ACAGTAGTCTGCACACTGGT....................................................................... 20 1 2 0.50 1 1 0
......................................................................................................................TACAGTAGTCTGCACATTGGC....................................................................... 21 1 2 0.50 1 1 0
....................................................................................GTGTTCCGACTACCTGTT............................................................................................................ 18 1 2 0.50 1 1 0
......................................................................................................................TACAGTAGCCTGCACATTGGTT...................................................................... 22 1 2 0.50 1 1 0
.......................................................................................................................ACAGTAGTCTGCAGATTGGT....................................................................... 20 1 2 0.50 1 1 0
.......................................................................................................................ACAGTAGTCTGCACATTGAT....................................................................... 20 1 2 0.50 1 1 0
.................................................................................CCAGTGTTCAGACTACCTGT............................................................................................................. 20 0 2 0.50 1 1 0
.....................................................................................................................ATACAGTAGTCTGCACATTGGT....................................................................... 22 1 2 0.50 1 1 0
.......................................................................................................................ACAGTAGTTTGCACATTGGTT...................................................................... 21 1 2 0.50 1 0 1
..................................................................................CAGTGTTCAGACTACCTGTA............................................................................................................ 20 1 2 0.50 1 1 0
.......................................................................................................................ACAGTAGTCTCCACATTGGTT...................................................................... 21 1 2 0.50 1 1 0
.......................................................................................................................ACAGTAGTGTGCACATTGG........................................................................ 19 1 2 0.50 1 0 1
................................................................................CCCAGTGTTCAGACTACCTGTTAT.......................................................................................................... 24 2 2 0.50 1 1 0
.......................................................................................................................ACAGTAGTCTGCACATTGGGTAA.................................................................... 23 2 2 0.50 1 1 0
.......................................................................................................................ACAGTAGTCTGCACCTTGGT....................................................................... 20 1 2 0.50 1 1 0
.......................................................................................................................ACAGTAGTTTGCACATTGGT....................................................................... 20 1 2 0.50 1 1 0
......................................................................................................................TACAGTAGTCTCCACATTGGT....................................................................... 21 1 2 0.50 1 1 0
.......................................................................................................................ACAGTAGTCGGCACATTGGTT...................................................................... 21 1 2 0.50 1 1 0
.......................................................................................................................ACAGTAGTCTGCACATCGGTT...................................................................... 21 1 2 0.50 1 1 0
....................................................................................GTGTTCAGACTACCTGTT............................................................................................................ 18 0 2 0.50 1 1 0
.......................................................................................................................ACAGTAGTCTGCACATTGATT...................................................................... 21 1 2 0.50 1 1 0
................................................................................CCCAGGGTTCAGACTACCTGT............................................................................................................. 21 1 2 0.50 1 1 0
.......................................................................................................................ACAGTCGTCTGCACATTGG........................................................................ 19 1 2 0.50 1 0 1
................................................................................CCCAGTGTTCAGCCTACCTGTT............................................................................................................ 22 1 2 0.50 1 1 0
.........................................................................................................................AGTAGTCTGCACATTGGTTA..................................................................... 20 0 2 0.50 1 1 0
.......................................................................................................................ACAGTAGTCTGCACATTCGTT...................................................................... 21 1 2 0.50 1 1 0
.......................................................................................................................ACAGTAGTCTGCACTTTGGT....................................................................... 20 1 2 0.50 1 1 0
.................................................................................CCAGTGTTTAGACTACCTGTT............................................................................................................ 21 1 2 0.50 1 1 0
......................................................................................................................TACAGTAGTCTGCACGTTGGTT...................................................................... 22 1 2 0.50 1 1 0
................................................................................CCCAGTGTTCAGACTCCCTGTT............................................................................................................ 22 1 2 0.50 1 1 0
......................................................................................................................TACAGAAGTCTGCACATTGGTT...................................................................... 22 1 2 0.50 1 1 0
................................................................................CCCACTGTTCAGACTACCTGT............................................................................................................. 21 1 2 0.50 1 1 0
.......................................................................................................................ACAGTAGTCTGTACATTGGT....................................................................... 20 1 2 0.50 1 0 1
......................................................................................................................TACAGTAGTCTGTACATTGGTT...................................................................... 22 1 2 0.50 1 1 0
................................................................................CCCAGTGTTTAGACTATCTGTTCT.......................................................................................................... 24 3 3 0.33 1 1 0
.................................................................................CCAGTGTTTAGACTATCTGTTC........................................................................................................... 22 2 3 0.33 1 1 0
................................................................................TCCAGTGTTTAGACTACCTGT............................................................................................................. 21 2 3 0.33 1 1 0
................................................................................CCCAGTCTTCAGACTACCTGTT............................................................................................................ 22 1 3 0.33 1 1 0
.......................................................................................................................ACAGTGGTCTGCACATTGGTT...................................................................... 21 1 3 0.33 1 1 0
.......................................................................................................................ACAGTGGTCTGCACATTGGT....................................................................... 20 1 3 0.33 1 1 0
.......................................................................................................................ACAGTAGTCTCCACATTGGTTT..................................................................... 22 2 3 0.33 1 1 0
.......................................................................................................................ACAGTTGTCTGCACATTGGTTT..................................................................... 22 2 3 0.33 1 1 0
.....................................................................................................................TAACAGTAGTCTGCACATTGGT....................................................................... 22 2 3 0.33 1 1 0
.......................................................................................................................ACAGCAGTCTGCACATTGG........................................................................ 19 1 3 0.33 1 0 1
................................................................................CCCATTGTTCAGACTACCTGT............................................................................................................. 21 1 3 0.33 1 0 1
.......................................................................................................................ACAGTAGTCTGCCCATTGTTT...................................................................... 21 2 3 0.33 1 1 0
........................................................................................................................CAGTAGTCTGCACATT.......................................................................... 16 0 3 0.33 1 1 0
................................................................................CCCAGTGTTCAGGCTACCTGT............................................................................................................. 21 1 3 0.33 1 1 0
....................................................................................................................CTCACAGTAGTCTGCACATTGGT....................................................................... 23 3 4 0.25 1 0 1
................................................................................CCCCGTGTTTAGACTATCTGTT............................................................................................................ 22 3 4 0.25 1 1 0
..........................................................................................................................GCAGTCTGCACATTGGTT...................................................................... 18 1 8 0.25 2 2 0
.......................................................................................................................TCAGTAGACTGCACATTGGTT...................................................................... 21 2 4 0.25 1 0 1
.................................................................................CCAGTGTTTAGACTATCTGT............................................................................................................. 20 2 10 0.20 2 2 0
................................................................................CCCAGTGTTCAGACCACCTG.............................................................................................................. 20 1 6 0.17 1 1 0
.......................................................................................................................ACAGTAGCCTGCATATTGGT....................................................................... 20 2 6 0.17 1 1 0
.......................................................................................................................ACAGTGGGCTGCACATTGGTT...................................................................... 21 2 7 0.14 1 0 1
.........................................................................................................................AGGAGTCTGCACATTGGT....................................................................... 18 1 7 0.14 1 0 1
................................................................................CCCAGGGTTTAGACTACCTG.............................................................................................................. 20 2 7 0.14 1 1 0
............................................................................................................................AGTCTGCACATTGGT....................................................................... 15 0 8 0.13 1 1 0
.......................................................................................................................ACAGAAGCCTGCACATTGGTT...................................................................... 21 2 8 0.13 1 1 0
......................................................................................................................AACAGTAGTCTGCACATT.......................................................................... 18 1 9 0.11 1 1 0
................................................................................CCCAGGGTTTAGACTATCTGTT............................................................................................................ 22 3 10 0.10 1 1 0
................................................................................CCCAGTGTTCAGACT................................................................................................................... 15 0 11 0.09 1 1 0
.......................................................................................................................ACAGAAGTCTGCACATTGGG....................................................................... 20 2 12 0.08 1 1 0
.......................................................................................................................ACAGCAGTCTGAACATTGGT....................................................................... 20 2 16 0.06 1 0 1
.......................................................................................................................ACAGGAGTCTGCACATTGGC....................................................................... 20 2 16 0.06 1 1 0
................................................................................CCCAGTGTTTAGACTATCTGTC............................................................................................................ 22 3 18 0.06 1 1 0
......................................................................................GTTCAGACTACCTTTT............................................................................................................ 16 1 20 0.05 1 1 0
................................................................................CCCAGTGCTTAGACTATCTGTT............................................................................................................ 22 3 20 0.05 1 1 0

Anti-sense strand reads

TCCTTCCCTCCGAAAAGGGTTCCTGGTCCTCTCCTAAAATTCATGTATCTACCTTCGAAGACCTCTAGGACGAGGCAGCGGGGTCACAAGTCTGATGGACAAGTCCTGTTACGGCAACATGTCATCAGACGTGTAACCAATCTGACCCGTTCCCTCTCGTTGCGGTGCCTGACGACCCCTGTTTGTCTTAAACGACACAGGTTCCTCTTC
*******************************************************.((((((((.(((...(((((((.((((((((.(((.((((......))..)).))))))))))).)))))))...))).)))).)))).***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:31 AM