ID:

ocu-mir-199a-1

 Coordinate:

chrUn0216:201975-202045 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-45.4 -45.0 -45.0
mature
  1. chr13:20628455-20628475 +
  2. chrUn0216:202021-202041 +
star
  1. chr13:20628416-20628437 +
  2. chrUn0216:201980-202001 +

Sense Strand Reads

TGCAGCGCAGCGGGGGCCCCGCGGCCTGGGGCCCCGAGACAGCCGGCCCCGCCCGCCCAGTGTTCAGACTACCTGTTCAGGGGACTCCAGATGTGTACAGTAGTCTGCACATTGGTTAGGCTGGGCCCGGGCCAGCGGCACGACGGACGGCCCCCACCCTCGCCCCAGGTG
****************************************.((((((((.(((...(((((((.((((((((.(((.((..((...)).....)).))))))))))).)))))))...))).)))))..)))*************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
................................................................................................ACAGTAGTCTGCACATTGGTT...................................................... 21 0 2 1085.00 2170 1973 197
................................................................................................ACAGTAGTCTGCACATTGGT....................................................... 20 0 2 911.50 1823 1560 263
...............................................................................................TACAGTAGTCTGCACATTGGTT...................................................... 22 0 2 206.50 413 411 2
...............................................................................................TACAGTAGTCTGCACATTGGT....................................................... 21 0 2 193.50 387 376 11
.......................................................CCCAGTGTTCAGACTACCTGTT.............................................................................................. 22 0 2 191.50 383 380 3
................................................................................................ACAGTAGTCTGCACATTGGTTA..................................................... 22 0 2 122.00 244 221 23
...............................................................................................AACAGTAGTCTGCACATTGGTT...................................................... 22 1 2 102.50 205 203 2
................................................................................................ACAGTAGTCTGCACATTGG........................................................ 19 0 2 79.00 158 67 91
.................................................................................................CAGTAGTCTGCACATTGGTT...................................................... 20 0 2 63.00 126 118 8
................................................................................................ACAGTAGTCTGCACATTGGTTT..................................................... 22 1 2 63.00 126 124 2
.......................................................CCCAGTGTTTAGACTATCTGTT.............................................................................................. 22 2 2 60.00 120 118 2
.......................................................CCCAGTGTTCAGACTACCTGT............................................................................................... 21 0 2 52.00 104 88 16
.................................................................................................CAGTAGTCTGCACATTGGT....................................................... 19 0 2 36.00 72 67 5
.......................................................CCCAGTGTTTAGACTACCTGT............................................................................................... 21 1 2 27.50 55 55 0
..............................................................................................ATACAGTAGTCTGCACATTGGTT...................................................... 23 1 2 25.00 50 50 0
.......................................................CCCAGTGTTCAGACTACCTG................................................................................................ 20 0 2 24.00 48 26 22
................................................................................................ACAGTAGTCTGCACATTGGTTAT.................................................... 23 1 2 22.50 45 42 3
.......................................................CCCAGTGTTTAGACTACCTG................................................................................................ 20 1 2 16.50 33 33 0
..................................................................................................AGTAGTCTGCACATTGGTT...................................................... 19 0 2 13.00 26 25 1
...............................................................................................AACAGTAGTCTGCACATTGGTTT..................................................... 23 2 2 13.00 26 25 1
...............................................................................................TACAGTAGTCTGCACATTGGTTT..................................................... 23 1 2 12.50 25 25 0
................................................................................................ACAGTAGTCTGCACATTGGTTAA.................................................... 23 1 2 9.00 18 17 1
.......................................................CCCAGTGTTTAGACTACCTGTT.............................................................................................. 22 1 2 8.50 17 17 0
.......................................................CCCAGTGTTTAGACTATCTGT............................................................................................... 21 2 2 8.00 16 7 9
................................................................................................ACAGTAGTCTGCACATTG......................................................... 18 0 2 8.00 16 3 13
...............................................................................................TACAGTAGTCTGCACATTGG........................................................ 20 0 2 7.50 15 4 11
................................................................................................ACAGCAGTCTGCACATTGGTT...................................................... 21 1 2 6.50 13 12 1
.......................................................CCCAGTGTTTAGACTATCTGTTC............................................................................................. 23 2 2 6.50 13 13 0
......................................................ACCCAGTGTTCAGACTACCTGT............................................................................................... 22 1 2 6.00 12 0 12
..........................................................AGTGTTCAGACTACCTGTT.............................................................................................. 19 0 2 5.50 11 11 0
...................................................................................................GTAGTCTGCACATTGGTT...................................................... 18 0 2 5.50 11 11 0
..................................................................................................AGTAGTCTGCACATTGGT....................................................... 18 0 2 4.50 9 9 0
................................................................................................ACAGTATTCTGCACATTGGTT...................................................... 21 1 2 4.50 9 9 0
................................................................................................ACAGTAGTCTGCACATTGGC....................................................... 20 1 2 4.50 9 8 1
........................................................CCAGTGTTTAGACTATCTGTT.............................................................................................. 21 2 4 4.50 18 18 0
................................................................................................ACAGTAGTCTGCACATTGGTTG..................................................... 22 1 2 4.00 8 8 0
................................................................................................ACAGAAGTCTGCACATTGGT....................................................... 20 1 2 4.00 8 7 1
................................................................................................ACAGTAGTCTGCACATT.......................................................... 17 0 2 4.00 8 8 0
................................................................................................ACAGTAGGCTGCACATTGGT....................................................... 20 1 2 4.00 8 5 3
................................................................................................ACAGTAGTCTGCACATTGGTTTT.................................................... 23 2 2 3.50 7 7 0
...............................................................................................AACAGTAGTCTGCACATTGGTTA..................................................... 23 1 2 3.50 7 6 1
.......................................................CCCAGTGTTCAGACTACCTGTTA............................................................................................. 23 1 2 3.50 7 7 0
.................................................................................................CAGTAGTCTGCACATTGGTTA..................................................... 21 0 2 3.00 6 4 2
...................................................................................................GTAGTCTGCACATTGGT....................................................... 17 0 2 3.00 6 5 1
.......................................................CCCAGTGTTCAGACTACCTGTTC............................................................................................. 23 0 2 3.00 6 6 0
........................................................CCAGTGTTCAGACTACCTGTT.............................................................................................. 21 0 2 3.00 6 6 0
................................................................................................ACAGTAGTCTGCATATTGGTT...................................................... 21 1 2 3.00 6 6 0
...............................................................................................AACAGTAGTCTGCACATTGGT....................................................... 21 1 2 3.00 6 1 5
................................................................................................ACAGAAGTCTGCACATTGGTT...................................................... 21 1 2 2.50 5 4 1
................................................................................................ACAGTAGACTGCACATTGGT....................................................... 20 1 2 2.50 5 4 1
................................................................................................ACAGGAGTCTGCACATTGGTT...................................................... 21 1 2 2.50 5 4 1
................................................................................................ACAGTAGTCTGCACATTGGCT...................................................... 21 1 2 2.50 5 5 0
................................................................................................ACAGGAGTCTGCACATTGGT....................................................... 20 1 2 2.50 5 4 1
................................................................................................ACAGTAGACTGCACATTGGTT...................................................... 21 1 2 2.50 5 3 2
.................................................................................................CAGTAGTCTGCACATTGGTTT..................................................... 21 1 2 2.50 5 5 0
..............................................................................................AAACAGTAGTCTGCACATTGGTT...................................................... 23 2 3 2.33 7 7 0
.............................................................GTTCAGACTACCTGTT.............................................................................................. 16 0 3 2.33 7 7 0
.................................................................................................CAGTAGTCTGCACATTGG........................................................ 18 0 2 2.00 4 1 3
...............................................................................................TACAGTAGTCTGCACATTGGTTA..................................................... 23 0 2 2.00 4 4 0
................................................................................................ACAGTAGTCTGCACATTGGTTGT.................................................... 23 2 2 2.00 4 4 0
.......................................................CCCAGTGTTCAGACTACCTGTTT............................................................................................. 23 1 2 2.00 4 4 0
................................................................................................ACAGTAGTCTGCCCATTGGT....................................................... 20 1 2 2.00 4 2 2
.........................................................CAGTGTTCAGACTACCTGTT.............................................................................................. 20 0 2 2.00 4 4 0
................................................................................................ACAGTAGTCTGCACATTGTTT...................................................... 21 1 2 2.00 4 4 0
...............................................................................................AACAGTAGTCTGCACATTGGTTAT.................................................... 24 2 2 2.00 4 4 0
................................................................................................ACAGTAGTCTGCACATTGGA....................................................... 20 1 2 2.00 4 4 0
.......................................................CCCAGTGTTCAGACTACCTGTTCAGGGGA....................................................................................... 29 0 1 2.00 2 2 0
................................................................................................ACAGCAGTCTGCACATTGGT....................................................... 20 1 2 2.00 4 4 0
................................................................................................ACAGTAGTCTGCACAT........................................................... 16 0 2 1.50 3 3 0
...............................................................................................TACAGTAGTCTGCACATTGGTTAA.................................................... 24 1 2 1.50 3 3 0
...................................................................................................GTAGTCTGCACATTGGTTA..................................................... 19 0 2 1.50 3 2 1
......................................................ACCCAGTGTTCAGACTACCTG................................................................................................ 21 1 2 1.50 3 0 3
.....................................................................................................AGTCTGCACATTGGTTAA.................................................... 18 1 4 1.50 6 6 0
................................................................................................ACAGTAGTCCGCACATTGGTT...................................................... 21 1 2 1.50 3 3 0
...............................................................................................TACAGTATTCTGCACATTGGT....................................................... 21 1 2 1.50 3 3 0
.......................................................CCCAGTGTTCAGACTACCT................................................................................................. 19 0 2 1.50 3 2 1
................................................................................................ACAGTAGCCTGCACATTGGTT...................................................... 21 1 2 1.50 3 2 1
................................................................................................ACAGTAGGCTGCACATTGGTT...................................................... 21 1 2 1.50 3 3 0
.....................................................................................................AGTCTGCACATTGGTT...................................................... 16 0 6 1.33 8 7 1
...............................................................................................AACAGTAGTCTGCACATTTGTT...................................................... 22 2 3 1.33 4 4 0
.......................................................CCCAGTGTTTAGACTATCTG................................................................................................ 20 2 6 1.33 8 0 8
................................................................................................ACAGTAGTCTGCGCATTGGTT...................................................... 21 1 2 1.00 2 2 0
...............................................................................................TACAGTAGTCTGCACATT.......................................................... 18 0 2 1.00 2 1 1
...............................................................................................TACAGTAGTCTGCACATTGGTAT..................................................... 23 2 2 1.00 2 2 0
................................................................................................ACAGTAATCTGCACATTGGTT...................................................... 21 1 2 1.00 2 2 0
................................................................................................ACAGTAGCCTGCACATTGGT....................................................... 20 1 3 1.00 3 2 1
......................................................ACCCAGTGTTTAGACTATCTGT............................................................................................... 22 3 11 1.00 11 0 11
.................................................................................................CAGGAGTCTGCACATTGGTT...................................................... 20 1 2 1.00 2 2 0
...............................................................................................TACAGTAGTCTGCACATTGGA....................................................... 21 1 2 1.00 2 2 0
.......................................................CCCAGTGCTCAGACTACCTGTT.............................................................................................. 22 1 2 1.00 2 1 1
...............................................................................................AACAGTAGTCTGCACATTGG........................................................ 20 1 2 1.00 2 0 2
...............................................................................................TACAGTAGTCTGCATATTGGTT...................................................... 22 1 2 1.00 2 2 0
................................................................................................ACAGTAGTCTGCACATTGGGT...................................................... 21 1 2 1.00 2 1 1
..........................................................AGTGTTCAGACTACCTGTTT............................................................................................. 20 1 2 1.00 2 2 0
...............................................................................................TACAGTAGTCTGCACATTGGTTAT.................................................... 24 1 2 1.00 2 2 0
................................................................................................ACAGTAGTCTGCAAATTGGT....................................................... 20 1 2 1.00 2 2 0
.......................................................CCCAGTGTTCAGACTACCTGTTCT............................................................................................ 24 1 2 1.00 2 2 0
.......................................................CCCAGTGTTCAGACTAC................................................................................................... 17 0 2 1.00 2 2 0
.........................................................CAGTGTTTAGACTACCTG................................................................................................ 18 1 2 1.00 2 2 0
...............................................................................................TACAGTAGTCTGCACATTGGG....................................................... 21 1 2 1.00 2 2 0
.......................................................CCCAGGGTTCAGACTACCTGTT.............................................................................................. 22 1 2 1.00 2 2 0
.......................................................CCCAGTGTTTAGACTACCTGTTC............................................................................................. 23 1 2 1.00 2 2 0
.......................................................CCCAGTGTTCAGACTACC.................................................................................................. 18 0 2 1.00 2 2 0
...............................................................................................TACAGTAGTCTGCACATTGGTTCT.................................................... 24 2 2 1.00 2 2 0
................................................................................................ACAGTAGGCTGCACATTGGTTA..................................................... 22 1 2 1.00 2 2 0
................................................................................................ACAGTAGTCCGCACATTGGT....................................................... 20 1 2 1.00 2 1 1
................................................................................................ACACTAGTCTGCACATTGGTT...................................................... 21 1 2 1.00 2 1 1
................................................................................................ACAGTAGTGTGCACATTGGTT...................................................... 21 1 2 1.00 2 2 0
...............................................................................................AACAGTAGTCTGCACATTGGTTAA.................................................... 24 2 2 1.00 2 2 0
................................................................................................ACAGTAGTCTGCATATTGGT....................................................... 20 1 2 1.00 2 2 0
................................................................................................ACAGTAGTCTGCTCATTGGTT...................................................... 21 1 2 1.00 2 2 0
................................................................................................ACAGTAGTCTGCACATTGGTA...................................................... 21 1 2 1.00 2 0 2
.......................................................CCCGGTGTTCAGACTACCTGTT.............................................................................................. 22 1 2 1.00 2 2 0
...............................................................................................TACAGTAGTCTGCACATTGCTT...................................................... 22 1 2 1.00 2 2 0
............................................................................................GCCAACAGTAGTCTGCACATTGGT....................................................... 24 3 1 1.00 1 0 1
....................................................................................................TAGTCTGCACATTGG........................................................ 15 0 7 0.71 5 5 0
...............................................................................................AACAGGAGTCTGCACATTGGTT...................................................... 22 2 3 0.67 2 2 0
.................................................................................................CAGTAGTCTGCACATTGGC....................................................... 19 1 3 0.67 2 2 0
...............................................................................................TACAGTAGTCTGCAC............................................................. 15 0 5 0.60 3 3 0
................................................................................................TCAGTAGTCTGCACATTGGTT...................................................... 21 1 2 0.50 1 0 1
...............................................................................................TACAGTAGTCTACACATTGGT....................................................... 21 1 2 0.50 1 1 0
.......................................................CCCCGTGTTCAGACTACCTGTT.............................................................................................. 22 1 2 0.50 1 1 0
...............................................................................................TACAGTAGGCTGCACATTGGT....................................................... 21 1 2 0.50 1 1 0
.......................................................CCCAGGGTTCAGACTACCTGT............................................................................................... 21 1 2 0.50 1 1 0
...............................................................................................TACAGTAGTCTGCACATTGGC....................................................... 21 1 2 0.50 1 1 0
.......................................................CCCAGTGTTCAGACTCCCTGTT.............................................................................................. 22 1 2 0.50 1 1 0
................................................................................................AAAGTAGTCGGCACATTGGT....................................................... 20 2 2 0.50 1 1 0
................................................................................................ACAGTAGTCTGCACATTGGG....................................................... 20 1 2 0.50 1 1 0
................................................................................................ACAGTAGACTGCACATTGGTTA..................................................... 22 1 2 0.50 1 0 1
................................................................................................ACAGTAGTCTGCACATGGGT....................................................... 20 1 2 0.50 1 1 0
................................................................................................ACAGTAGTCTGCACATTGGTC...................................................... 21 1 2 0.50 1 0 1
................................................................................................ACAGTAGTGTGCACATTGG........................................................ 19 1 2 0.50 1 0 1
........................................................CCAGTGTTTAGACTACCTGTT.............................................................................................. 21 1 2 0.50 1 1 0
................................................................................................ACAGTTGTCTGCACATTGGTT...................................................... 21 1 2 0.50 1 1 0
..............................................................................................ATACAGTAGTCTGCACATTGGT....................................................... 22 1 2 0.50 1 1 0
................................................................................................ACAGTAGTTTGCACATTGGTT...................................................... 21 1 2 0.50 1 0 1
................................................................................................ACAGTAGTCGGCACATTGGT....................................................... 20 1 2 0.50 1 1 0
.................................................................................................CAGTAGTCTGCACATGGGTT...................................................... 20 1 2 0.50 1 1 0
................................................................................................ACAGTAGTCTCCACATTGGTT...................................................... 21 1 2 0.50 1 1 0
...............................................................................................TACAGTAGTCTGCACATTGGTTC..................................................... 23 1 2 0.50 1 1 0
.......................................................CCCACTGTTCAGACTACCTGT............................................................................................... 21 1 2 0.50 1 1 0
................................................................................................ACAGTAGTCTGCACATTGAT....................................................... 20 1 2 0.50 1 1 0
................................................................................................AAAGTAGTCTGCACATTGGT....................................................... 20 1 2 0.50 1 1 0
.........................................................CAGTGTTCAGCCTACCTGTT.............................................................................................. 20 1 2 0.50 1 1 0
.................................................................................................CAGTAGTCTGCACATCGGTT...................................................... 20 1 2 0.50 1 1 0
................................................................................................ACAGTAGTCTGCACATTGGGTAA.................................................... 23 2 2 0.50 1 1 0
...............................................................................................AACAGAAGTCTGCACATTGGTT...................................................... 22 2 2 0.50 1 1 0
................................................................................................ACAGGAGTCTGCACATTGGTTA..................................................... 22 1 2 0.50 1 1 0
................................................................................................CCAGTAGTCTGCACATTGGTTA..................................................... 22 1 2 0.50 1 1 0
................................................................................................ACAGTAGTCTGCACCTTGGT....................................................... 20 1 2 0.50 1 1 0
...............................................................................................TACAGTAGTCTGCACATAGGTT...................................................... 22 1 2 0.50 1 1 0
.......................................................CCCAGTGTTCAGCCTACCTGTT.............................................................................................. 22 1 2 0.50 1 1 0
.......................................................CCCAGTGTTCAGACTACCTGTTAT............................................................................................ 24 2 2 0.50 1 1 0
................................................................................................ACAGAAGTCTGCACATTGGTTA..................................................... 22 1 2 0.50 1 1 0
..................................................................................................AGTAGTCTGCACATTGGTTA..................................................... 20 0 2 0.50 1 1 0
...............................................................................................TACAGAAGTCTGCACATTGGTT...................................................... 22 1 2 0.50 1 1 0
...................................................................................................GTAGTCTGCACATTGGTTAT.................................................... 20 1 2 0.50 1 1 0
................................................................................................ACAGTAGTCTGCACACTGGT....................................................... 20 1 2 0.50 1 1 0
...............................................................................................TACAGTAGTCTGCACATTG......................................................... 19 0 2 0.50 1 0 1
................................................................................................ACAGTAGTCGGCACATTGGTT...................................................... 21 1 2 0.50 1 1 0
.......................................................CCCAGAGTTCAGACTACCTGTT.............................................................................................. 22 1 2 0.50 1 1 0
........................................................CCAGTGTTCAGACTACCTGT............................................................................................... 20 0 2 0.50 1 1 0
...........................................................GTGTTCCGACTACCTGTT.............................................................................................. 18 1 2 0.50 1 1 0
................................................................................................ACAGTAGTTTGCACATTGGT....................................................... 20 1 2 0.50 1 1 0
...............................................................................................TACAGTAGTCTCCACATTGGT....................................................... 21 1 2 0.50 1 1 0
................................................................................................ACAGTAGTCTGCACCTTGGTT...................................................... 21 1 2 0.50 1 1 0
................................................................................................ACAGTAGTGTGCACATTGGT....................................................... 20 1 2 0.50 1 1 0
................................................................................................ACAGTAGTCTGCACATTCGTT...................................................... 21 1 2 0.50 1 1 0
..............................................................................................ATACAGTAGTCTGCACATTGG........................................................ 21 1 2 0.50 1 0 1
.......................................................CCCGGTGTTTAGACTACCTG................................................................................................ 20 2 2 0.50 1 1 0
...............................................................................................TACAATAGTCTGCACATTGGTT...................................................... 22 1 2 0.50 1 1 0
................................................................................................ACAGTAGGCTGCACATTGGTTT..................................................... 22 2 4 0.50 2 2 0
................................................................................................ACAGTCGTCTGCACATTGGTT...................................................... 21 1 2 0.50 1 0 1
....................................................................................................TAGTCTGCACATTGGT....................................................... 16 0 4 0.50 2 2 0
...........................................................GTGTTCAGACTACCTGTT.............................................................................................. 18 0 2 0.50 1 1 0
...............................................................................................TACAGTAGCCTGCACATTGGTT...................................................... 22 1 2 0.50 1 1 0
..............................................................................................TTACAGTAGTCTGCACATTGGT....................................................... 22 1 2 0.50 1 1 0
...............................................................................................TACAGTAGTCTGCACGTTGGTT...................................................... 22 1 2 0.50 1 1 0
...............................................................................................TACAGTAGTCTGTACATTGGTT...................................................... 22 1 2 0.50 1 1 0
................................................................................................ACAGTCGTCTGCACATTGG........................................................ 19 1 2 0.50 1 0 1
................................................................................................ACAGTAGTATGCACATTGGT....................................................... 20 1 2 0.50 1 1 0
................................................................................................ACAGTAGTATGCACATTGGTT...................................................... 21 1 2 0.50 1 1 0
................................................................................................ACAGTAGTCTGCACATTGGGTT..................................................... 22 2 2 0.50 1 1 0
.................................................................................................CAGTAGTCTGCACATTCGT....................................................... 19 1 2 0.50 1 1 0
.................................................................................................CAGTAGTCTGCACATTGGTTAT.................................................... 22 1 2 0.50 1 1 0
...............................................................................................TACAGTAGCCTGCACATTGGT....................................................... 21 1 2 0.50 1 1 0
................................................................................................ACACTAGTCTGCACATTGG........................................................ 19 1 2 0.50 1 0 1
................................................................................................ACAGTAGTCTGCACATTGTTTA..................................................... 22 1 2 0.50 1 0 1
................................................................................................ACAGTAGTCTGTACATTGGT....................................................... 20 1 2 0.50 1 0 1
................................................................................................ACAGTAGTCTGCACTTTGGT....................................................... 20 1 2 0.50 1 1 0
................................................................................................ACAGTAGTCTGCACATTGCTT...................................................... 21 1 2 0.50 1 1 0
.................................................................................................CAGTAGTCCGCACATTGGTT...................................................... 20 1 2 0.50 1 1 0
................................................................................................ACAGTAGTCTGCACATCGGTT...................................................... 21 1 2 0.50 1 1 0
..........................................................................................AGCTCTACAGTAGTCTGCACATTGG........................................................ 25 3 2 0.50 1 0 1
...............................................................................................AACAGTAGTCTGCACATTCGTT...................................................... 22 2 2 0.50 1 1 0
................................................................................................ACAGTAGTCTGCAGATTGGT....................................................... 20 1 2 0.50 1 1 0
................................................................................................ACAGTAGTCTGCACATTGATT...................................................... 21 1 2 0.50 1 1 0
.........................................................CAGTGTTCAGACTACCTGTA.............................................................................................. 20 1 2 0.50 1 1 0
................................................................................................ACAGTATTCTGCACATTGGT....................................................... 20 1 2 0.50 1 1 0
................................................................................................ACAGTAGCCTGCACATTGGTTAT.................................................... 23 2 2 0.50 1 1 0
................................................................................................ACAGTGGTCTGCACATTGGT....................................................... 20 1 3 0.33 1 1 0
................................................................................................ACAGTTGTCTGCACATTGGTTT..................................................... 22 2 3 0.33 1 1 0
................................................................................................ACAGTAGTCTGCCCATTGTTT...................................................... 21 2 3 0.33 1 1 0
........................................................CCAGTGTTTAGACTATCTGTTC............................................................................................. 22 2 3 0.33 1 1 0
.................................................................................................CAGTAGTCTGCACATT.......................................................... 16 0 3 0.33 1 1 0
..............................................................................................TAACAGTAGTCTGCACATTGGT....................................................... 22 2 3 0.33 1 1 0
.......................................................TCCAGTGTTTAGACTACCTGT............................................................................................... 21 2 3 0.33 1 1 0
.......................................................CCCAGTGTTTAGACTATCTGTTCT............................................................................................ 24 3 3 0.33 1 1 0
.......................................................CCCATTGTTCAGACTACCTGT............................................................................................... 21 1 3 0.33 1 0 1
................................................................................................ACAGTAGTCTCCACATTGGTTT..................................................... 22 2 3 0.33 1 1 0
.......................................................CCCAGTGTTCAGGCTACCTGT............................................................................................... 21 1 3 0.33 1 1 0
................................................................................................ACAGTGGTCTGCACATTGGTT...................................................... 21 1 3 0.33 1 1 0
................................................................................................ACAGCAGTCTGCACATTGG........................................................ 19 1 3 0.33 1 0 1
.......................................................CCCAGTCTTCAGACTACCTGTT.............................................................................................. 22 1 3 0.33 1 1 0
................................................................................................TCAGTAGACTGCACATTGGTT...................................................... 21 2 4 0.25 1 0 1
.............................................................................................CTCACAGTAGTCTGCACATTGGT....................................................... 23 3 4 0.25 1 0 1
.......................................................CCCCGTGTTTAGACTATCTGTT.............................................................................................. 22 3 4 0.25 1 1 0
...................................................................................................GCAGTCTGCACATTGGTT...................................................... 18 1 8 0.25 2 2 0
........................................................CCAGTGTTTAGACTATCTGT............................................................................................... 20 2 10 0.20 2 2 0
................................................................................................ACAGTAGCCTGCATATTGGT....................................................... 20 2 6 0.17 1 1 0
.......................................................CCCAGTGTTCAGACCACCTG................................................................................................ 20 1 6 0.17 1 1 0
.......................................................CCCAGGGTTTAGACTACCTG................................................................................................ 20 2 7 0.14 1 1 0
..................................................................................................AGGAGTCTGCACATTGGT....................................................... 18 1 7 0.14 1 0 1
................................................................................................ACAGTGGGCTGCACATTGGTT...................................................... 21 2 7 0.14 1 0 1
................................................................................................ACAGAAGCCTGCACATTGGTT...................................................... 21 2 8 0.13 1 1 0
.....................................................................................................AGTCTGCACATTGGT....................................................... 15 0 8 0.13 1 1 0
...............................................................................................AACAGTAGTCTGCACATT.......................................................... 18 1 9 0.11 1 1 0
.......................................................CCCAGGGTTTAGACTATCTGTT.............................................................................................. 22 3 10 0.10 1 1 0
.......................................................CCCAGTGTTCAGACT..................................................................................................... 15 0 11 0.09 1 1 0
................................................................................................ACAGAAGTCTGCACATTGGG....................................................... 20 2 12 0.08 1 1 0
................................................................................................ACAGGAGTCTGCACATTGGC....................................................... 20 2 16 0.06 1 1 0
................................................................................................ACAGCAGTCTGAACATTGGT....................................................... 20 2 16 0.06 1 0 1
.......................................................CCCAGTGTTTAGACTATCTGTC.............................................................................................. 22 3 18 0.06 1 1 0
.............................................................GTTCAGACTACCTTTT.............................................................................................. 16 1 20 0.05 1 1 0
.......................................................CCCAGTGCTTAGACTATCTGTT.............................................................................................. 22 3 20 0.05 1 1 0

Anti-sense strand reads

ACGTCGCGTCGCCCCCGGGGCGCCGGACCCCGGGGCTCTGTCGGCCGGGGCGGGCGGGTCACAAGTCTGATGGACAAGTCCCCTGAGGTCTACACATGTCATCAGACGTGTAACCAATCCGACCCGGGCCCGGTCGCCGTGCTGCCTGCCGGGGGTGGGAGCGGGGTCCAC
***************************************.((((((((.(((...(((((((.((((((((.(((.((..((...)).....)).))))))))))).)))))))...))).)))))..)))**************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:57 AM