ID:

ocu-mir-196a-2

Coordinate:

chr4:37775884-37775968 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-52.6 -52.0 -52.0
mature
  1. chr19:38730720-38730740 +
  2. chr4:37775899-37775919 +
star

Sense Strand Reads

TCCCTTCTCCTCCGGATAGACGCAAAGCGAATCTCCCGCCCTACTCGCTCAGCTGATCTGTGGCTTAGGTAGTTTCATGTTGTTGGGATTGAGTTTTGAACTCGGCAACAAGAAACTGCCTGAGTTACATCAGTCGGTTTTCGTCGAGGGCCCCCACCCACCTCTCCTGCGCCTTCCCTCTCAGC
***********************************...((((...((...(((((((.((((((((((((((((((.((((((((((.((........)))))))))))).))))))))))))))))))...)))))))..))...))))***********************************
Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes
GSM1528821
Adult_testes_Mili_IP
.................................................................TAGGTAGTTTCGTGTTGTTGG................................................................................................... 21 1 3 2.67 8 8 0
.................................................................TAGGTAGTTTCATGTTGTTGG................................................................................................... 21 0 2 1.50 3 3 0
.................................................................TAGGTAGTTTCGTGTTGTTG.................................................................................................... 20 1 4 1.25 5 5 0
.................................................................TAGGTAGTTTCATGTTGT...................................................................................................... 18 0 2 1.00 2 2 0
.................................................................TAGGTAGTTTCATGTTGTT..................................................................................................... 19 0 2 1.00 2 0 2
.................................................................TAGGTAGTTTCATGTTGTTGGG.................................................................................................. 22 0 2 1.00 2 1 1
.................................................................TAGGTAGTTTCGTGTTGT...................................................................................................... 18 1 4 0.25 1 1 0

Anti-sense strand reads

AGGGAAGAGGAGGCCTATCTGCGTTTCGCTTAGAGGGCGGGATGAGCGAGTCGACTAGACACCGAATCCATCAAAGTACAACAACCCTAACTCAAAACTTGAGCCGTTGTTCTTTGACGGACTCAATGTAGTCAGCCAAAAGCAGCTCCCGGGGGTGGGTGGAGAGGACGCGGAAGGGAGAGTCG
***********************************...((((...((...(((((((.((((((((((((((((((.((((((((((.((........)))))))))))).))))))))))))))))))...)))))))..))...))))***********************************
Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:45 AM