ID:

ocu-mir-196a-1

 Coordinate:

chr19:38730697-38730798 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-56.4 -56.1 -55.9
mature
  1. chr19:38730720-38730740 +
  2. chr4:37775899-37775919 +
star

Sense Strand Reads

CTCAAAGGGGCCGTGGGGCCTGCCCCCCAGGGAGCCCTGGGCCTGGAGCTGGAACTGGAACTGCTGGGTGAATTAGGTAGTTTCATGTTGTTGGGCCTGGGTCTCTGAACACAACGACATGGAACCACCTGACTCACGGCAGTTACTGCTCCTCGCTTAGCTGGAGGAGTTGGGGGGAGAGGAAGGCTCAGGACTGCAGAGT
***********************************.((((((..(((((.......(((((((((..((((.((((((.((((((((((((((.....((....)).....)))))))))))))).)))))).))))))))))).)))))))..)))))).......*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
.........................................................................TAGGTAGTTTCGTGTTGTTGG............................................................................................................ 21 1 3 2.67 8 8 0
.........................................................................TAGGTAGTTTCATGTTGTTGG............................................................................................................ 21 0 2 1.50 3 3 0
.........................................................................TAGGTAGTTTCGTGTTGTTG............................................................................................................. 20 1 4 1.25 5 5 0
.........................................................................TAGGTAGTTTCATGTTGT............................................................................................................... 18 0 2 1.00 2 2 0
.........................................................................TAGGTAGTTTCATGTTGTT.............................................................................................................. 19 0 2 1.00 2 0 2
.........................................................................TAGGTAGTTTCATGTTGTTGGG........................................................................................................... 22 0 2 1.00 2 1 1
.........................................................................TAGGTAGTTTCGTGTTGT............................................................................................................... 18 1 4 0.25 1 1 0

Anti-sense strand reads

GAGTTTCCCCGGCACCCCGGACGGGGGGTCCCTCGGGACCCGGACCTCGACCTTGACCTTGACGACCCACTTAATCCATCAAAGTACAACAACCCGGACCCAGAGACTTGTGTTGCTGTACCTTGGTGGACTGAGTGCCGTCAATGACGAGGAGCGAATCGACCTCCTCAACCCCCCTCTCCTTCCGAGTCCTGACGTCTCA
***********************************.((((((..(((((.......(((((((((..((((.((((((.((((((((((((((.....((....)).....)))))))))))))).)))))).))))))))))).)))))))..)))))).......*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:40 AM