ID:

ocu-mir-18a

 Coordinate:

chr8:93067823-93067918 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-26.7 -26.6 -26.5

Sense Strand Reads

GCTGCCTCGGGAAGCCAAGGTGGGCTTTAAAGCGCAGGGCCTGCTGATGTTGAGTGCTTTTTGTTCTAAGGTGCATCTAGTGCAGATAGTGAAGTAGATTAGCATCTACTGCCCTAAGTGCTCCTTCTGGCATAAGAAGTTATGTTTTCATCCAATAATTCAAGTCAAGCAAGTATATAGGTGTGTTAATAGTTTT
*******************************************************(((((((((.((((((.((((.(((.((((.(((((...........)).))))))).))).)))).)))..))).))))))))).....*************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
......................................................................GTGCATCTAGTGCAGAT............................................................................................................. 17 0 1 230.00 230 230 0
..................................................................TAAGGTGCATCTAGTGCAGAT............................................................................................................. 21 0 1 114.00 114 103 11
..................................................................TAAGGTGCATCTAGTGCAGATA............................................................................................................ 22 0 1 20.00 20 3 17
.......................................................................TGCATCTAGTGCAGAT............................................................................................................. 16 0 2 12.50 25 25 0
.....................................................................GGTGCATCTAGTGCAGAT............................................................................................................. 18 0 1 11.00 11 11 0
........................................................................GCATCTAGTGCAGAT............................................................................................................. 15 0 3 10.67 32 32 0
..................................................................TAAGGTGCATCTAGTGCAG............................................................................................................... 19 0 2 6.50 13 5 8
...................................................................AAGGTGCATCTAGTGCAGAT............................................................................................................. 20 0 1 6.00 6 6 0
..................................................................TAAGGTGCATCTAGTGCAGATAG........................................................................................................... 23 0 1 6.00 6 0 6
..................................................................TAAGGTGCATCTAGTGCAGA.............................................................................................................. 20 0 1 5.00 5 3 2
...........................................................................................................ACTGCCCTAAGTGCTCCTTCTGT.................................................................. 23 1 1 4.00 4 3 1
...................................................................AAGGTGCATCTAGTGCAGA.............................................................................................................. 19 0 1 4.00 4 4 0
......................................................................GTGCATCTAGTGCAGATAGT.......................................................................................................... 20 0 1 4.00 4 4 0
.............................................GATGTTGAGTGCTTTTTGTTC.................................................................................................................................. 21 0 1 4.00 4 4 0
..................................................................TAAGGGGCATCTAGTGCAGAT............................................................................................................. 21 1 1 3.00 3 3 0
..............................................ATGTTGAGTGCTTTTTGTT................................................................................................................................... 19 0 1 3.00 3 3 0
..................................................................TAAGGTGCATCTAGTGCA................................................................................................................ 18 0 2 2.50 5 4 1
...........................................................................................................ACTGCCCTAAGTGCTCCTTCTGAT................................................................. 24 2 1 2.00 2 2 0
......................................................................GTGCATCTAGTGCAGATA............................................................................................................ 18 0 1 2.00 2 2 0
..................................................................TAAGGTGCATCTAGTGCAGATAGA.......................................................................................................... 24 1 1 2.00 2 0 2
.......................................................................TGCATCTAGTGCAGATAGT.......................................................................................................... 19 0 1 2.00 2 2 0
...................................................................AAGGTGCATCTAGTGCAGATAAAT......................................................................................................... 24 3 1 2.00 2 0 2
..................................................................TAAGGTGCATCTAGTGCAGATAGAA......................................................................................................... 25 2 1 1.00 1 0 1
..................................................................TAAGGTGCATATAGTGCAGAT............................................................................................................. 21 1 1 1.00 1 1 0
....................................................................AGGTGCATCTAGTGCAGAT............................................................................................................. 19 0 1 1.00 1 1 0
...........................................................................................................ACTGCCCTAAGTGCTCCTTCTT................................................................... 22 1 1 1.00 1 1 0
.................................................................ATAAGGTGCATCTAGTGCAGATAGA.......................................................................................................... 25 2 1 1.00 1 0 1
.......................................................................TGCATCTAGTGCAGATA............................................................................................................ 17 0 1 1.00 1 1 0
...........................................................................................................ACTGCCCTAAGTGCTCCTTCTGG.................................................................. 23 0 1 1.00 1 1 0
..................................................................TAAGGTGCATCTAGCGCAGATA............................................................................................................ 22 1 1 1.00 1 0 1
..................................................................TAAGGAGCATCTAGTGCAGAT............................................................................................................. 21 1 1 1.00 1 1 0
...................................................................AAGGAGCATCTAGTGCAGAT............................................................................................................. 20 1 1 1.00 1 1 0
..............................................................GATCAAAAGTGCATCTAGTGCAGAT............................................................................................................. 25 3 1 1.00 1 1 0
..................................................................TAAGGGGCATCTAGTGCAGA.............................................................................................................. 20 1 1 1.00 1 1 0
..................................................................TAAGGTGCATCTAGTGCAGATAGT.......................................................................................................... 24 0 1 1.00 1 0 1
..................................................................TAAGGTGCATCTAGTGCAGATAGTGA........................................................................................................ 26 0 1 1.00 1 0 1
..................................................................TAAGGGGCATCTAGTGCAGATAGT.......................................................................................................... 24 1 1 1.00 1 0 1
..................................................................TAAGGCGCATCTAGTGCAGAT............................................................................................................. 21 1 1 1.00 1 0 1
..................................................................TAAGGTGCATCTAGTGCAGAAAA........................................................................................................... 23 2 1 1.00 1 0 1
..................................................................TAAAGTGCATCTAGTGCAGAT............................................................................................................. 21 1 1 1.00 1 1 0
..................................................................TAAGGTGCATCCAGTGCAGAT............................................................................................................. 21 1 1 1.00 1 1 0
..................................................................TAAGGTGCATCTAGTGCAGATAACGCA....................................................................................................... 27 3 1 1.00 1 1 0
..................................................................TAAGGTGCATCTAGTGCAGATAA........................................................................................................... 23 1 1 1.00 1 0 1
.................................................................ATAAGGTGCATCTAGTGCAGAT............................................................................................................. 22 1 1 1.00 1 0 1
.........................................................................CATCTAGTGCAGATAG........................................................................................................... 16 0 1 1.00 1 1 0
..................................................................TAAGGTGCATCTAGGGCAGAT............................................................................................................. 21 1 1 1.00 1 1 0
..................................................................TAAGGTGCATCTAGTGCATATA............................................................................................................ 22 1 1 1.00 1 0 1
..................................................................CAAGGTGCATCTAGTGCAGAT............................................................................................................. 21 1 1 1.00 1 0 1
......................................................................GAGCATCTAGTGCAGAT............................................................................................................. 17 1 7 0.43 3 3 0
......................................................................GTGCATCTAGTGCAGAC............................................................................................................. 17 1 7 0.29 2 2 0
......................................................................GTACATCTAGTGCAGAT............................................................................................................. 17 1 4 0.25 1 1 0
......................................................................GTGCATCTAGTACAGAT............................................................................................................. 17 1 4 0.25 1 1 0
......................................................................GTGCTTCTAGTGCAGAT............................................................................................................. 17 1 6 0.17 1 1 0
......................................................................GGGCATCTAGTGCAGAT............................................................................................................. 17 1 9 0.11 1 1 0
......................................................................GTGCATCTAGAGCAGAT............................................................................................................. 17 1 11 0.09 1 1 0
......................................................................GTGCCTCTAGTGCAGAT............................................................................................................. 17 1 12 0.08 1 1 0
......................................................................GTGCATCAAGTGCAGAT............................................................................................................. 17 1 20 0.05 1 1 0

Anti-sense strand reads

CGACGGAGCCCTTCGGTTCCACCCGAAATTTCGCGTCCCGGACGACTACAACTCACGAAAAACAAGATTCCACGTAGATCACGTCTATCACTTCATCTAATCGTAGATGACGGGATTCACGAGGAAGACCGTATTCTTCAATACAAAAGTAGGTTATTAAGTTCAGTTCGTTCATATATCCACACAATTATCAAAA
***************************************************(((((((((.((((((.((((.(((.((((.(((((...........)).))))))).))).)))).)))..))).))))))))).....******************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:49 AM