ID:

ocu-mir-181d

 Coordinate:

chrUn0990:3926-3998 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.4 -40.2 -40.1

Sense Strand Reads

TCTGGAAACTTCTAGATCTGGGGGCACCCCGCTCCCACCTCGCAAAGGTCACAATCAACATTCATTGTTGTCGGTGGGTTGTGAGGACACAGGCCAGACCCACGGGCAGGTGAATGTCATTGTGGCTGGGCCAGACAGCCTGAGGGGGTGGGAAAGGGGCGGGCTGACGAAGG
***********************************...((.((...(((((((((..((((((((..(((((.((((((((((....))))......)))))).))))))))))))).)))))))))..)).))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
........................................................AACATTCATTGTTGTCGGTGGGT.............................................................................................. 23 0 1 145.00 145 121 24
........................................................AACATTCATTGTTGTCGGT.................................................................................................. 19 0 1 143.00 143 143 0
........................................................AACATTCATTGTTGTCGGTGGG............................................................................................... 22 0 1 112.00 112 86 26
........................................................AACATTCATTGTTGTCGGTGG................................................................................................ 21 0 1 89.00 89 65 24
........................................................AACATTCATTGTTGTCGGTGGGTT............................................................................................. 24 0 1 19.00 19 17 2
.........................................................ACATTCATTGTTGTCGGT.................................................................................................. 18 0 1 14.00 14 14 0
.........................................................ACATTCATTGTTGTCGGTGGGT.............................................................................................. 22 0 1 12.00 12 10 2
.......................................................AAACATTCATTGTTGTCGGTGGGT.............................................................................................. 24 1 1 11.00 11 11 0
........................................................AACATTCATTGTTGTCGGTG................................................................................................. 20 0 1 7.00 7 7 0
.........................................................ACATTCATTGTTGTCGGTGGG............................................................................................... 21 0 1 7.00 7 7 0
........................................................AACATTAATTGTTGTCGGTGG................................................................................................ 21 1 1 7.00 7 7 0
........................................................AACATTCATTGTTGTCGG................................................................................................... 18 0 1 5.00 5 4 1
.........................................................ACATTCATTGTTGTCGGTGGGTT............................................................................................. 23 0 1 4.00 4 4 0
........................................................AACATTCATTGTTGTCGGTT................................................................................................. 20 1 1 4.00 4 4 0
.........................................................ACATTCATTGTTGTCGGTGG................................................................................................ 20 0 1 3.00 3 3 0
........................................................AACATTCATTGTTGTCGGTGGGG.............................................................................................. 23 1 1 3.00 3 2 1
........................................................AACATTCATTGTTGTCGGCGGG............................................................................................... 22 1 1 3.00 3 0 3
.........................................................ACATTCATTGTTGTCGGTG................................................................................................. 19 0 1 3.00 3 3 0
........................................................AACATTCATTGTTGTCGGC.................................................................................................. 19 1 1 3.00 3 3 0
........................................................AACATTCATTGTTGTCGGTGGGTTT............................................................................................ 25 1 2 3.00 6 6 0
...........................................................ATTCATTGTTGTCGGTGGGTT............................................................................................. 21 0 1 2.00 2 2 0
........................................................AACATTCATTGTTGTCGGG.................................................................................................. 19 1 1 1.00 1 1 0
........................................................AACATTCATTGTTGTCG.................................................................................................... 17 0 1 1.00 1 1 0
........................................................AACATTCATTATTGTCGGTTGGT.............................................................................................. 23 2 1 1.00 1 1 0
.........................................................ACATTCATTGTTGTCGGCGGGTT............................................................................................. 23 1 1 1.00 1 1 0
........................................................AACATTCATTGTTGTCGGCGGGT.............................................................................................. 23 1 1 1.00 1 1 0
........................................................ACCATTCATTGTTGTCGGTGGGT.............................................................................................. 23 1 1 1.00 1 0 1
............................................................TTCATTGTTGTCGGTGGGTT............................................................................................. 20 0 1 1.00 1 1 0
........................................................AACATTCATTGTTGTCGGTGGGTTTT........................................................................................... 26 1 1 1.00 1 0 1
........................................................AACACTCATTGTTGTCGGTGGGT.............................................................................................. 23 1 1 1.00 1 0 1
........................................................AACATTCTTTGTTGTCGGTGGG............................................................................................... 22 1 1 1.00 1 1 0
........................................................AACATTCATTGTTGCCGGTGG................................................................................................ 21 1 1 1.00 1 0 1
........................................................AACATTCATTGTTGTCGGTGGGTTTTA.......................................................................................... 27 2 2 1.00 2 2 0
........................................................AACATTCATTGTTGTCGGGGGGT.............................................................................................. 23 1 1 1.00 1 1 0
.........................................................ACATCCATTGTTGTCGGTGGGT.............................................................................................. 22 1 1 1.00 1 1 0
........................................................AACATTCATTGTTGTCGGTGGA............................................................................................... 22 1 1 1.00 1 0 1
........................................................AAAATTCATTGTTGTCGGTGGGT.............................................................................................. 23 1 1 1.00 1 1 0
.......................................................AAACATTCATTGTTGTCGGTGG................................................................................................ 22 1 1 1.00 1 0 1
........................................................AACATTCATTGTTGTCGGTGGT............................................................................................... 22 1 1 1.00 1 1 0
..........................................................CATTCATTGTTGTCGGTGGG............................................................................................... 20 0 1 1.00 1 1 0
........................................................AACATTCATTGTTGTCGGTGGGTGT............................................................................................ 25 2 2 0.50 1 1 0
........................................................AGCATTCATTGTTGTCGGT.................................................................................................. 19 1 2 0.50 1 1 0
........................................................AACATTCATTGTTGTCGGTGAT............................................................................................... 22 2 2 0.50 1 1 0
...........................................................ATTCATTGTTGTCGGT.................................................................................................. 16 0 2 0.50 1 1 0
.........................................................ACATTCATTGTTGTCGGTGGGTTT............................................................................................ 24 1 2 0.50 1 1 0

Anti-sense strand reads

AGACCTTTGAAGATCTAGACCCCCGTGGGGCGAGGGTGGAGCGTTTCCAGTGTTAGTTGTAAGTAACAACAGCCACCCAACACTCCTGTGTCCGGTCTGGGTGCCCGTCCACTTACAGTAACACCGACCCGGTCTGTCGGACTCCCCCACCCTTTCCCCGCCCGACTGCTTCC
***********************************...((.((...(((((((((..((((((((..(((((.((((((((((....))))......)))))).))))))))))))).)))))))))..)).))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 01:01 AM