ID:

ocu-mir-153

 Coordinate:

chr13:9786308-9786376 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-42.0

Sense Strand Reads

TCACTGTAGAAATGGACAAACCCTTACTTTGCCAGCTAATTAGCGGTGGCCAGTGTCATTTTTGTGATGTTGCAGCTAGTAATATGAGCCCAGTTGCATAGTCACAAAAGTGATCATTGGAAACTGTGTCTGTGCTGCAGGGACATGTGGGAAGCCCCTTTCTGAGCCT
***************************************...(((((..(((((((((((((((((((..(((((((.((.......))..)))))))..))))))))))))).))))))..)))))...*************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
.............................................................................................TTGCATAGTCACAAAAGTGATC...................................................... 22 0 1 31.00 31 2 29
.............................................................................................TTGCATAGTCACAAAAGTGAT....................................................... 21 0 1 19.00 19 15 4
......................................................GTCATTTTTGTGATGTTGCAGCT............................................................................................ 23 0 1 13.00 13 12 1
......................................................GTCATTTTTGTGATGTTGCAGC............................................................................................. 22 0 1 10.00 10 10 0
.............................................................................................TTGCATAGTCACAAAAGTGATCAT.................................................... 24 0 1 7.00 7 7 0
......................................................GTCATTTTTGTGATGTTGCAG.............................................................................................. 21 0 1 5.00 5 5 0
......................................................GTCATTTTTGTGATGTTGCAGCTT........................................................................................... 24 1 1 4.00 4 4 0
............................................................................................ATTGCATAGTCACAAAAGTGATC...................................................... 23 1 1 3.00 3 0 3
......................................................GTCATTTTTGTGATGTTGCAGCTAGT......................................................................................... 26 0 1 3.00 3 3 0
......................................................GTCATTTTTGTGATGTTGTAGCT............................................................................................ 23 1 1 2.00 2 2 0
.............................................................................................TTGCATAGTCACAAAAGTGATCA..................................................... 23 0 1 2.00 2 2 0
..............................................................................................TGCATAGTCACAAAAGTGATCA..................................................... 22 0 1 1.00 1 0 1
..........................................................................................GACTTGCATAGTCACAAAAGTGATCA..................................................... 26 2 1 1.00 1 0 1
........................................................................................CGGAATTGCATAGTCACAAAAGTGATCA..................................................... 28 3 1 1.00 1 0 1
.............................................................................................TTGCATAGTCACAAAAGTGA........................................................ 20 0 1 1.00 1 1 0
.....................................................AGTCATTTTTGTGATGTTGCAGCTAGTA........................................................................................ 28 1 1 1.00 1 0 1
............................................................................................ATTGCATAGTCACAAAAGTG......................................................... 20 1 2 0.50 1 0 1
.............................................................................................TTGCATAGTCACAAAAGT.......................................................... 18 0 2 0.50 1 0 1
......................................................GTCATTTTTGTGATGT................................................................................................... 16 0 5 0.40 2 2 0
..........................................................................................GAATTGCATAGTCACAAAAGCGA........................................................ 23 3 3 0.33 1 0 1
..................................................AGCTGTCATTTTTGTGATGTTGC................................................................................................ 23 3 11 0.09 1 1 0

Anti-sense strand reads

AGTGACATCTTTACCTGTTTGGGAATGAAACGGTCGATTAATCGCCACCGGTCACAGTAAAAACACTACAACGTCGATCATTATACTCGGGTCAACGTATCAGTGTTTTCACTAGTAACCTTTGACACAGACACGACGTCCCTGTACACCCTTCGGGGAAAGACTCGGA
***************************************...(((((..(((((((((((((((((((..(((((((.((.......))..)))))))..))))))))))))).))))))..)))))...*************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:31 AM