ID:

ocu-mir-148b

 Coordinate:

chr4:38090643-38090741 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-30.4 -30.1 -30.1

Sense Strand Reads

TATCCAAGCCACCCAGCCTCCCACGAAGCAGCCTGCCTATACATCATTTCTAGGCACCATTAGCATTTGAGGTGAAGTTCTGTTATACACTCAGGCTGTGGCTCTCTGAAAGTCAGTGCATCACAGAACTTTGTCTCGAAAGCTTTCTAGCAGCTACCCGTTTTGGGAGGGAAGAATAGACTTTACGTGGACCGAAGCT
**********************************************************...(((.((((((((((((((((((.((.((((..((((.............)))))))).)).)))))))))))))))))).))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
................................................................................................................TCAGTGCATCACAGAACTTTGTT................................................................ 23 1 1 64.00 64 63 1
................................................................................................................TCAGTGCATCACAGAACTTTGT................................................................. 22 0 1 58.00 58 57 1
................................................................................................................TCAGTGCATCACAGAACTTTG.................................................................. 21 0 1 20.00 20 13 7
................................................................................................................TCAGTGCATCACAGAACTTT................................................................... 20 0 1 17.00 17 7 10
...............................................................................................................ATCAGTGCATCACAGAACTTT................................................................... 21 1 1 3.00 3 2 1
................................................................................................................TCAGTGCATCACAGAACTT.................................................................... 19 0 1 3.00 3 0 3
.........................................................................GAAGTTCTGTTATACACTCAGGC....................................................................................................... 23 0 1 2.00 2 2 0
................................................................................................................TCAGTGCATGACAGAACTTGGTTT............................................................... 24 3 2 1.00 2 2 0
................................................................................................................TCAGGGCATCACAGAACTTTGTT................................................................ 23 2 1 1.00 1 1 0
................................................................................................................TCAGAGCATCACAGAACTTT................................................................... 20 1 1 1.00 1 0 1
..............................................................................................................AATCAGTGCATCACAGAACTTT................................................................... 22 1 1 1.00 1 0 1
................................................................................................................GCAGTGCATCACAGAACTTTG.................................................................. 21 1 1 1.00 1 1 0
................................................................................................................TCAGGGCATCACAGAACTTTGT................................................................. 22 1 1 1.00 1 1 0
.............................................................................................................GAATCAGTGCATCACAGAACTTT................................................................... 23 2 1 1.00 1 0 1
.................................................................................................................CAGTGCATCACAGAACTTTGT................................................................. 21 0 1 1.00 1 1 0
...........................................................................................................GAAAATCAGTGCACTACAGAACTTT................................................................... 25 3 2 0.50 1 0 1
................................................................................................................TCAGTGCATCAAAGAACTTT................................................................... 20 1 2 0.50 1 0 1
.....................................................................................................................GCATCACAGAACTTTGT................................................................. 17 0 3 0.33 1 1 0
....................................................................................................................TGCACCACAGAACTTTG.................................................................. 17 1 20 0.05 1 1 0

Anti-sense strand reads

ATAGGTTCGGTGGGTCGGAGGGTGCTTCGTCGGACGGATATGTAGTAAAGATCCGTGGTAATCGTAAACTCCACTTCAAGACAATATGTGAGTCCGACACCGAGAGACTTTCAGTCACGTAGTGTCTTGAAACAGAGCTTTCGAAAGATCGTCGATGGGCAAAACCCTCCCTTCTTATCTGAAATGCACCTGGCTTCGA
**************************************************...(((.((((((((((((((((((.((.((((..((((.............)))))))).)).)))))))))))))))))).))).....********************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:44 AM