ID:

ocu-mir-148a

 Coordinate:

chr10:10783738-10783830 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-45.8 -44.9 -44.9

Sense Strand Reads

TCTTCGCCGGGGGAGCGCACACCTGCGGGGAGCCGCCGCGGGAGGAAGACAGCCCGCTCGGCCTTTGGAGCCAAAGTTCTGAGACACTCCGACTCTGAGTACGATAGAAGTCAGTGCACTACAGAACTTTGTCTCCGGAGGCCGCCGACGCCGGGCCGGTGGCCCTGGTGGCCACGTCGCCGAGCGCCTTCCC
*********************************************************.((((((((((((.((((((((((((.((((..(((((((.......))).))))))))..)).)))))))))).))))))))))))...********************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
..............................................................................................................TCAGTGCACTACAGAACTTTGT............................................................. 22 0 1 318.00 318 313 5
..............................................................................................................TCAGTGCACTACAGAACTTT............................................................... 20 0 1 210.00 210 77 133
..............................................................................................................TCAGTGCACTACAGAACTTTGTT............................................................ 23 1 1 90.00 90 90 0
...................................................................................................................GCACTACAGAACTTTGT............................................................. 17 0 2 63.00 126 126 0
.................................................................................................................GTGCACTACAGAACTTTGT............................................................. 19 0 1 56.00 56 56 0
..............................................................................................................TCAGTGCACTACAGAACTTTG.............................................................. 21 0 1 43.00 43 27 16
..................................................................................................................TGCACTACAGAACTTTGT............................................................. 18 0 1 33.00 33 33 0
..............................................................................................................TCAGTGCACTACAGAACTT................................................................ 19 0 1 19.00 19 9 10
...............................................................................................................CAGTGCACTACAGAACTTTGT............................................................. 21 0 1 16.00 16 15 1
..............................................................................................................TCAGTGCACTACAGAACT................................................................. 18 0 1 11.00 11 10 1
..............................................................................................................TCAGTGCACTACAGAACTTTGTA............................................................ 23 1 1 8.00 8 8 0
........................................................................AAAGTTCTGAGACACTCCGACT................................................................................................... 22 0 1 8.00 8 8 0
.............................................................................................................ATCAGTGCACTACAGAACTTT............................................................... 21 1 1 7.00 7 0 7
..............................................................................................................TCAGTGCACTACAGAACTTTGTC............................................................ 23 0 1 7.00 7 7 0
..............................................................................................................TCAGTGCACTACAGAACTTTGTTT........................................................... 24 1 1 6.00 6 5 1
...........................................................................................................GAATCAGTGCACTACAGAACTTT............................................................... 23 2 1 6.00 6 0 6
................................................................................................................AGTGCACTACAGAACTTTGT............................................................. 20 0 1 5.00 5 5 0
....................................................................................................................CACTACAGAACTTTGT............................................................. 16 0 3 4.33 13 13 0
...............................................................................................................CAGTGCACTACAGAACTTT............................................................... 19 0 1 4.00 4 0 4
...............................................................................................................CAGTGCACTACAGAACTTTG.............................................................. 20 0 1 4.00 4 4 0
..............................................................................................................TCAGTGCACTACAGAAC.................................................................. 17 0 1 4.00 4 3 1
...............................................................................................................CAGTGCACTACAGAACTTTGTT............................................................ 22 1 1 3.00 3 3 0
...........................................................................GTTCTGAGACACTCCGAC.................................................................................................... 18 0 1 3.00 3 0 3
.............................................................................................................ATCAGTGCACTACAGAACTTTG.............................................................. 22 1 1 3.00 3 3 0
.............................................................................................................GTCAGTGCACTACAGAACTTTG.............................................................. 22 0 1 3.00 3 3 0
...................................................................................................................GCACTACAGAACTTTG.............................................................. 16 0 4 2.00 8 8 0
..............................................................................................................TCAGTGCACTACAGAACTTTGTCT........................................................... 24 0 1 2.00 2 2 0
..............................................................................................................TCAGTGCACTACAGAACTTTGA............................................................. 22 1 1 2.00 2 2 0
............................................................................................................AATCAGTGCACTACAGAACTTT............................................................... 22 1 1 2.00 2 0 2
................................................................................................................AGTGCACTACAGAACTTT............................................................... 18 0 1 2.00 2 0 2
.............................................................................................................ATCAGTGCACTACAGAACTTTGT............................................................. 23 1 1 2.00 2 1 1
........................................................................AAAGTTCTGAGACACTCCGA..................................................................................................... 20 0 1 2.00 2 0 2
.....................................................................................................................ACTACAGAACTTTGT............................................................. 15 0 11 1.45 16 16 0
...............................................................................................................CAGTGCACTACAGAACTTTGTC............................................................ 22 0 1 1.00 1 1 0
..............................................................................................................TCAGCGCACTACAGAACTTTGTT............................................................ 23 2 1 1.00 1 1 0
..............................................................................................................TCAGTGCACTACATAACTTTGT............................................................. 22 1 1 1.00 1 1 0
..............................................................................................................TCAGTGCACTACGGAACTTTGT............................................................. 22 1 1 1.00 1 1 0
...............................................................................................................CAGTGCACTACAGAACTTTGTCTGT......................................................... 25 2 1 1.00 1 0 1
..............................................................................................................TCAGTGCACTACAGAA................................................................... 16 0 3 1.00 3 2 1
...............................................................................................................CAGTGCACTACAGAACTT................................................................ 18 0 1 1.00 1 0 1
.................................................................................................................GTGCACTACAGAACTTT............................................................... 17 0 1 1.00 1 0 1
................................................................................................................AGTGCCCTACAGAACTTTGT............................................................. 20 1 1 1.00 1 1 0
..................................................................................................................TGCACTACAGAACTTTG.............................................................. 17 0 2 1.00 2 2 0
.........................................................................................................CGGAATCAGTGCACTACAGAACTTT............................................................... 25 3 1 1.00 1 0 1
..............................................................................................................CCAGTGCACTACAGAACTTTGT............................................................. 22 1 1 1.00 1 1 0
..............................................................................................................TCAGAGCACTACAGAACTTT............................................................... 20 1 1 1.00 1 1 0
.............................................................................................................GTCAGTGCACTACAGAACTTTGT............................................................. 23 0 1 1.00 1 1 0
..............................................................................................................TCAGTGCACTACAGAACTTTGC............................................................. 22 1 1 1.00 1 1 0
......................................................................................................GATAGAAGTCAGTGCACTACAGAACTTTGTA............................................................ 31 1 1 1.00 1 1 0
..............................................................................................................TCAGTGCACTACAGAACTTTTT............................................................. 22 1 1 1.00 1 1 0
..............................................................................................................TCAGTGCAATACAGAACTTT............................................................... 20 1 1 1.00 1 0 1
........................................................................AAAGTTCTGAGACACTCTGA..................................................................................................... 20 1 2 1.00 2 1 1
..............................................................................................................TCAGTGCACAACAGAACTTTGT............................................................. 22 1 1 1.00 1 1 0
..............................................................................................................TCAGTGCAATACAGAACTTTGT............................................................. 22 1 1 1.00 1 1 0
...............................................................................................................CAGCGCACTACAGAACTTTGT............................................................. 21 1 1 1.00 1 1 0
..............................................................................................................TCAGTGCACTACAGAAGTTTGT............................................................. 22 1 1 1.00 1 1 0
........................................................................AAAGTTCTGAGACACTCCGACTA.................................................................................................. 23 1 1 1.00 1 0 1
.................................................................................................................GCGCACTACAGAACTTTGT............................................................. 19 1 1 1.00 1 1 0
..............................................................................................................TCAGTGCCCTACAGAACTTTGT............................................................. 22 1 1 1.00 1 1 0
..............................................................................................................TCAGTGAACTACAGAACTTTGT............................................................. 22 1 1 1.00 1 1 0
..............................................................................................................TCAGGGCACTACAGAACTTT............................................................... 20 1 1 1.00 1 1 0
..................................................................................................................TGCACTACAGAACTTTGTC............................................................ 19 0 1 1.00 1 1 0
.............................................................................................................GTCAGTGCACTACAGAACTTT............................................................... 21 0 1 1.00 1 0 1
..............................................................................................................TCAGTGCACTACTGAACTTTGT............................................................. 22 1 1 1.00 1 1 0
..............................................................................................................TCAATGCACTACAGAACTTTGT............................................................. 22 1 1 1.00 1 1 0
..........................................................................................................GATCTCAGTGCACTACAGAACTTTG.............................................................. 25 2 1 1.00 1 1 0
............................................................................................................AGTCAGTGCACTACAGAACTTTG.............................................................. 23 0 1 1.00 1 1 0
.................................................................................................................ATGCACTACAGAACTTTGT............................................................. 19 1 3 0.67 2 2 0
..............................................................................................................TCAGGGCACTACAGAACT................................................................. 18 1 2 0.50 1 1 0
..............................................................................................................TCATTGCACTACAGAACTTT............................................................... 20 1 4 0.50 2 2 0
.........................................................................................................GAAAATCAGTGCACTACAGAACTTT............................................................... 25 3 2 0.50 1 0 1
..............................................................................................................TCAGTGCACTACAGAACC................................................................. 18 1 3 0.33 1 1 0
.................................................................................................................GTGCACTACAGAACT................................................................. 15 0 4 0.25 1 1 0
................................................................................................................AGTGCACTACAGAACTTTGGAG........................................................... 22 3 7 0.14 1 0 1
...................................................................................................................GCCCTACAGAACTTTGT............................................................. 17 1 18 0.06 1 1 0

Anti-sense strand reads

AGAAGCGGCCCCCTCGCGTGTGGACGCCCCTCGGCGGCGCCCTCCTTCTGTCGGGCGAGCCGGAAACCTCGGTTTCAAGACTCTGTGAGGCTGAGACTCATGCTATCTTCAGTCACGTGATGTCTTGAAACAGAGGCCTCCGGCGGCTGCGGCCCGGCCACCGGGACCACCGGTGCAGCGGCTCGCGGAAGGG
**********************************************.((((((((((((.((((((((((((.((((..(((((((.......))).))))))))..)).)))))))))).))))))))))))...********************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:28 AM