ID:

ocu-mir-145a

Coordinate:

chr3:31259931-31260000 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-43.1 -43.0 -43.0

Sense Strand Reads

CTGGGGACACGTGGGCCTGGGGGTCCACGGCCACGCTTGCCCACCTTGTCCTCGGGGTCCAGTTTTCCCAGGAATCCCTTAGATGCTAAGATGGGGATTCCTGGAAATACTGTTCTTGAGGTCATGGTTTCACAGCTGGCCCAGCGTTGCCGGGGGGCCTCGGCTCAGCC
*****************************************.(((.((.((((((((..((((.((.((((((((((((.............)))))))))))).)).)))).)))))))).)).)))...***************************************
Read size # Mismatch Hit Count Total Norm Total GSM1528821
Adult_testes_Mili_IP
GSM1528820
Adult_testes
........................................................GTCCAGTTTTCCCAGGAATCC............................................................................................. 21 0 1 663.00 663 494 169
........................................................GTCCAGTTTTCCCAGGAAT............................................................................................... 19 0 1 385.00 385 18 367
.......................................................AGTCCAGTTTTCCCAGGAATCCC............................................................................................ 23 1 1 322.00 322 322 0
........................................................GTCCAGTTTTCCCAGGAATCCC............................................................................................ 22 0 1 148.00 148 26 122
........................................................GTCCAGTTTTCCCAGGAATCCCT........................................................................................... 23 0 1 138.00 138 8 130
.......................................................AGTCCAGTTTTCCCAGGAATCC............................................................................................. 22 1 1 95.00 95 93 2
........................................................GTCCAGTTTTCCCAGGAATC.............................................................................................. 20 0 1 66.00 66 30 36
..............................................................................................GGATTCCTGGAAATACTGTTCT...................................................... 22 0 1 57.00 57 0 57
..............................................................................................GGATTCCTGGAAATACTGTTCTT..................................................... 23 0 1 51.00 51 0 51
.......................................................AGTCCAGTTTTCCCAGGAATCCCT........................................................................................... 24 1 1 41.00 41 40 1
.......................................................AGTCCAGTTTTCCCAGGAATC.............................................................................................. 21 1 2 34.50 69 69 0
.......................................................AGTCCAGTTTTCCCAGGAAT............................................................................................... 20 1 3 29.00 87 84 3
.........................................................TCCAGTTTTCCCAGGAATCC............................................................................................. 20 0 1 24.00 24 18 6
........................................................GTCCAGTTTTCCCAGGAATCCCTT.......................................................................................... 24 0 1 18.00 18 6 12
..............................................................................................GGATTCCTGGAAATACTGTT........................................................ 20 0 1 12.00 12 1 11
........................................................GTCCAGTTTTCCCAGGAA................................................................................................ 18 0 2 10.50 21 13 8
..............................................................................................GGATTCCTGGAAATACTGT......................................................... 19 0 1 10.00 10 0 10
...................................................AGGGAGTCCAGTTTTCCCAGGAATCCC............................................................................................ 27 3 1 8.00 8 0 8
................................................................................................ATTCCTGGAAATACTGTTCTT..................................................... 21 0 1 7.00 7 0 7
................................................................................................ATTCCTGGAAATACTGTTCTTT.................................................... 22 1 1 6.00 6 0 6
.......................................................AGTCCAGTTTTCCCAGGAATCTCGTA......................................................................................... 26 3 1 5.00 5 5 0
................................................................................................ATTCCTGGAAATACTGTTCT...................................................... 20 0 1 5.00 5 1 4
.........................................................TCCAGTTTTCCCAGGAATCCCT........................................................................................... 22 0 1 5.00 5 1 4
..........................................................CCAGTTTTCCCAGGAATCCCT........................................................................................... 21 0 1 5.00 5 0 5
........................................................GTCCAGTTTTCCCAGGAATCCCTAA......................................................................................... 25 1 1 5.00 5 0 5
........................................................GTACAGTTTTCCCAGGAATCC............................................................................................. 21 1 1 4.00 4 0 4
...............................................................................................GATTCCTGGAAATACTGTTCTT..................................................... 22 0 1 4.00 4 0 4
.......................................................GGTCCAGTTTTCCCAGGAATCCCTT.......................................................................................... 25 0 1 4.00 4 0 4
.......................................................AGTCCAGTTTTCCCAGGAATCCCTA.......................................................................................... 25 2 1 4.00 4 4 0
........................................................GTCCCGTTTTCCCAGGAATCC............................................................................................. 21 1 1 4.00 4 3 1
........................................................GTCCAGTTTTCCCAGGAATCCCTATTA....................................................................................... 27 3 1 4.00 4 0 4
..............................................................................................GGATTCCTGGAAATACTGTTC....................................................... 21 0 1 4.00 4 1 3
.........................................................TCCAGTTTTCCCAGGAATCCC............................................................................................ 21 0 1 3.00 3 2 1
........................................................GTCCAGTTTTCCCAGGAATCCCCA.......................................................................................... 24 2 1 3.00 3 0 3
.......................................................AGTCCAGTTTTCCCAGGAATCCCA........................................................................................... 24 2 1 3.00 3 3 0
...............................................................................................GATTCCTGGAAATACTGTTCT...................................................... 21 0 1 3.00 3 2 1
........................................................GTCCAGTTTTCCCAGGAATCCCTA.......................................................................................... 24 1 1 3.00 3 2 1
...........................................................CAGTTTTCCCAGGAATCC............................................................................................. 18 0 1 3.00 3 0 3
........................................................GTCCAGTTTTCCCAGGAATCCCTTAGAT...................................................................................... 28 0 1 3.00 3 0 3
........................................................GACCAGTTTTCCCAGGAATCC............................................................................................. 21 1 2 2.50 5 1 4
.......................................................GGTCCAGTTTTCCCAGGAATCCCTTCGTA...................................................................................... 29 3 1 2.00 2 2 0
.......................................................AGTCCAGTTTTCCCAGGAATCCCTG.......................................................................................... 25 2 1 2.00 2 2 0
............................................................AGTTTTCCCAGGAATCC............................................................................................. 17 0 2 2.00 4 1 3
.........................................................TCCAGTTTTCCCAGGAAT............................................................................................... 18 0 2 2.00 4 0 4
................................................................................................ATTCCTGGAAATACTGTTC....................................................... 19 0 1 2.00 2 2 0
........................................................GCCCAGTTTTCCCAGGAATCC............................................................................................. 21 1 1 2.00 2 0 2
........................................................GTCCAGTTTTCCCAGGA................................................................................................. 17 0 11 2.00 22 15 7
........................................................GTCCAGTTTTCCCAGGAATCCCA........................................................................................... 23 1 1 2.00 2 0 2
.......................................................AGTCCCGTTTTCCCAGGAATCCC............................................................................................ 23 2 1 2.00 2 2 0
.........................................................TCCAGTTTTCCCAGGAATCCCTT.......................................................................................... 23 0 1 2.00 2 2 0
........................................................GTCCAGTTTTCCCCGGAATCC............................................................................................. 21 1 1 2.00 2 1 1
.......................................................AGCCCAGTTTTCCCAGGAATCCC............................................................................................ 23 2 1 2.00 2 2 0
.......................................................GGTCCAGTTTTCCCAGGAATCCCT........................................................................................... 24 0 1 2.00 2 0 2
........................................................GTCCCGTTTTCCCAGGAATCCC............................................................................................ 22 1 1 2.00 2 0 2
....................................................GGGGGTCCAGTTTTCCCAGGAATCCC............................................................................................ 26 1 1 2.00 2 0 2
........................................................GTCCAGGTTTCCCAGGAATCC............................................................................................. 21 1 2 1.50 3 3 0
..............................................................................................GTATTCCTGGAAATACTGTTC....................................................... 21 1 2 1.50 3 0 3
.............................................................................................AGGATTCCTGGAAATACTGTT........................................................ 21 1 3 1.33 4 4 0
...............................................ATCCTGGGGGTCCAGTTTTCCCAGGA................................................................................................. 26 2 1 1.00 1 1 0
.................................................GCTGGGAGTCCAGTTTTCCCAGGAATC.............................................................................................. 27 3 1 1.00 1 1 0
.....................................................ATTGTCCAGTTTTCCCAGGAATCCC............................................................................................ 25 3 2 1.00 2 2 0
...............................................................................................GGTTCCTGGAAATACTGTTCT...................................................... 21 1 1 1.00 1 0 1
..............................................................................................GGACTCCTGGAAATACTGTTCT...................................................... 22 1 1 1.00 1 0 1
........................................................GTCCAGTTTTCCCAGGAACCC............................................................................................. 21 1 1 1.00 1 1 0
......................................................ATGTCCAGTTTTCCCAGGAATCC............................................................................................. 23 2 1 1.00 1 1 0
.......................................................AGTCCAGTTTTCCCAGGAATCCCCT.......................................................................................... 25 2 1 1.00 1 1 0
..............................................................TTTTCCCAGGAATCCCT........................................................................................... 17 0 1 1.00 1 0 1
.....................................................GGGGTCCAGTTTTCCCAGGAATCCCT........................................................................................... 26 0 1 1.00 1 0 1
............................................................AGTTTTCCCAGGAATCCC............................................................................................ 18 0 1 1.00 1 0 1
.......................................................AGTCCAGCTTTCCCAGGAATCCC............................................................................................ 23 2 2 1.00 2 2 0
.......................................................AGTCCACTTTTCCCAGGAATCCC............................................................................................ 23 2 1 1.00 1 1 0
........................................................GTCCAGTTTTCCCAGGAATCCCGT.......................................................................................... 24 1 1 1.00 1 0 1
.......................................................AGTCCAGTTTTCCCAGGAATCCCTT.......................................................................................... 25 1 1 1.00 1 1 0
........................................................GTCCCGTTTTCCCAGGAATC.............................................................................................. 20 1 1 1.00 1 1 0
.....................................................CTGGTCCAGTTTTCCCAGGAATCCC............................................................................................ 25 2 1 1.00 1 0 1
........................................................GTCCAGATTTCCCAGGAATCCCT........................................................................................... 23 1 1 1.00 1 0 1
........................................................GGCCAGTTTTCCCAGGAAT............................................................................................... 19 1 2 1.00 2 0 2
.......................................................AGTCCAGTTTTCCCAGGAATCCCTTA......................................................................................... 26 1 1 1.00 1 1 0
.......................................................AGTCCAGTGTTCCCAGGAATCC............................................................................................. 22 2 1 1.00 1 1 0
...................................................TCCATGTCCAGTTTTCCCAGGAATCC............................................................................................. 26 3 1 1.00 1 1 0
........................................................GTCTAGTTTTCCCAGGAAT............................................................................................... 19 1 1 1.00 1 0 1
.......................................................CGTCCAGTTTTCCCAGGAATCCC............................................................................................ 23 1 1 1.00 1 1 0
.............................................................................................AGGATTCCTGGAAATACCGTTC....................................................... 22 2 1 1.00 1 1 0
.......................................................AGTCCAGTTTTCCCAGGAATCCCGA.......................................................................................... 25 3 1 1.00 1 1 0
........................................................GTCCAGTTTTCCCGGGAATCC............................................................................................. 21 1 1 1.00 1 1 0
.......................................................GGTCCAGTTTTCCCAGGAATCC............................................................................................. 22 0 1 1.00 1 1 0
........................................................GTCCAGTTTTCCCAGGAATA.............................................................................................. 20 1 1 1.00 1 0 1
.......................................................GGTCCAGTTTTCCCAGGAAT............................................................................................... 20 0 1 1.00 1 0 1
..............................................................................................GGATTCCGGGAAATACTGTTCT...................................................... 22 1 1 1.00 1 0 1
...............................................................................................GATTCCTGGAAATACTGTTC....................................................... 20 0 1 1.00 1 0 1
........................................................GTCCAGTTTTCCCAGGAATCCCTTCCCTG..................................................................................... 29 3 1 1.00 1 1 0
.......................................................AGGCCAGTTTTCCCAGGAATCC............................................................................................. 22 2 2 1.00 2 2 0
.......................................................AGGCCAGTTTTCCCAGGAATCCCT........................................................................................... 24 2 1 1.00 1 1 0
............................................................................................GGGGATTCCTGGAAATACTGT......................................................... 21 0 1 1.00 1 0 1
........................................................GTCCAGGTTTCCCAGGAATCCC............................................................................................ 22 1 1 1.00 1 0 1
...................................................ACCTGGTCCAGTTTTCCCAGGAATCCCTT.......................................................................................... 29 3 1 1.00 1 1 0
........................................................GCCCAGTTTTCCCAGGAAT............................................................................................... 19 1 2 1.00 2 1 1
........................................................GTCCCGTTTTCCCAGGAAT............................................................................................... 19 1 2 1.00 2 0 2
.......................................................AGTCCCGTTTTCCCAGGAATCC............................................................................................. 22 2 1 1.00 1 1 0
.......................................................AGTCCGGTTTTCCCAGGAATCC............................................................................................. 22 2 1 1.00 1 1 0
........................................................GTCCAGTTTTCCCAGGAATCCA............................................................................................ 22 1 1 1.00 1 1 0
........................................................GTCCAGTTTTCCCAGGACTCCC............................................................................................ 22 1 1 1.00 1 0 1
......................................................GCGTCCAGTTTTCCCAGGAATCC............................................................................................. 23 1 1 1.00 1 1 0
.......................................................AGTCCAGTTTTCCAAGGAATCCC............................................................................................ 23 2 1 1.00 1 1 0
.......................................................AGTCCGGTTTTCCCAGGAATCCC............................................................................................ 23 2 1 1.00 1 1 0
.........................................................TCCAGTTTTCCCAGGAATC.............................................................................................. 19 0 1 1.00 1 1 0
..............................................................................................CGATTCCTGGAAATACTGTTCTT..................................................... 23 1 1 1.00 1 0 1
........................................................GTCCAGATTTCCCAGGAATCCC............................................................................................ 22 1 1 1.00 1 0 1
........................................................GTCCAGTTTTCCCATGAATCCC............................................................................................ 22 1 1 1.00 1 0 1
........................................................GTCCAGCTTTCCCAGGAATCC............................................................................................. 21 1 2 1.00 2 2 0
...............................................................................................TATTCCTGGAAATACTGTTCT...................................................... 21 1 2 1.00 2 0 2
..................................................ATGAGGGTCCAGTTTTCCCAGGAATCC............................................................................................. 27 3 1 1.00 1 1 0
........................................................GTCCAGTTTTCCCAGGTATCC............................................................................................. 21 1 1 1.00 1 1 0
............................................................AGTTTTCCCAGGAATC.............................................................................................. 16 0 6 0.83 5 0 5
............................................................AGTTTTCCCAGGAAT............................................................................................... 15 0 18 0.78 14 0 14
......................................................AAGTCCAGTTTTCCCAGGAATCC............................................................................................. 23 2 3 0.67 2 2 0
........................................................GTCCAGTTTTTCCAGGAAT............................................................................................... 19 1 8 0.63 5 0 5
.......................................................AGTCCAGTTTTCCCAGGAATCCA............................................................................................ 23 2 2 0.50 1 1 0
.......................................................AGTCCAGTATTCCCAGGAATCCC............................................................................................ 23 2 2 0.50 1 1 0
......................................................CTGTCCAGTTTTCCCAGGAATCCC............................................................................................ 24 2 2 0.50 1 1 0
........................................................ATCCAGTTTTCCCAGGAATCC............................................................................................. 21 1 2 0.50 1 1 0
..............................................................................................GGCTTCCTGGAAATACTGTTCT...................................................... 22 1 2 0.50 1 0 1
........................................................GTCCAGTTTTCTCAGGAATCCC............................................................................................ 22 1 2 0.50 1 1 0
........................................................GTCCTGTTTTCCCAGGAATCC............................................................................................. 21 1 2 0.50 1 1 0
........................................................GTCCAGTTTTCCCAGGAATTC............................................................................................. 21 1 2 0.50 1 1 0
........................................................GTCCAGTATTCCCAGGAATCC............................................................................................. 21 1 2 0.50 1 1 0
....................................................................................................CTGGAAATACTGTTCTT..................................................... 17 0 2 0.50 1 0 1
........................................................GCCCAGTTTTCCCAGGAATC.............................................................................................. 20 1 2 0.50 1 0 1
........................................................GTCCAGTTTTCCCAGGAATT.............................................................................................. 20 1 2 0.50 1 0 1
..................................................CTGGGTGTCCAGTTTTCCCAGGAAT............................................................................................... 25 2 2 0.50 1 1 0
........................................................GTCCAGTTTTCCCAGGGATCC............................................................................................. 21 1 2 0.50 1 1 0
.............................................................GTTTTCCCAGGAATCC............................................................................................. 16 0 2 0.50 1 0 1
.......................................................AGTCCTGTTTTCCCAGGAATCCC............................................................................................ 23 2 2 0.50 1 1 0
................................................................................................ATTCCTGGAAATACTGTT........................................................ 18 0 3 0.33 1 1 0
........................................................GTCCAGTTTTCCCAGG.................................................................................................. 16 0 15 0.33 5 1 4
......................................................CAGTCCAGTTTTCCCAGGAATCC............................................................................................. 23 2 3 0.33 1 1 0
.................................................CCTGGTAGTCCAGTTTTCCCAGGAAT............................................................................................... 26 3 3 0.33 1 0 1
.....................................................TGTGTCCAGTTTTCCCAGGAATCC............................................................................................. 24 2 3 0.33 1 1 0
.....................................................TGTGTCCAGTTTTCCCAGGAATC.............................................................................................. 23 2 3 0.33 1 1 0
.......................................................AGTCCAGTTTTCCCAGGAATA.............................................................................................. 21 2 20 0.30 6 6 0
........................................................GACCAGTTTTCCCAGGAAT............................................................................................... 19 1 4 0.25 1 0 1
........................................................GTCCAGTTTTCTCAGGAATCC............................................................................................. 21 1 4 0.25 1 1 0
....................................................CCTGGCCCAGTTTTCCCAGGAATCC............................................................................................. 25 3 4 0.25 1 1 0
........................................................GTCCAGATTTCCCAGGAAT............................................................................................... 19 1 4 0.25 1 0 1
........................................................GTCCAGTTTTCCCAGGAATCCAA........................................................................................... 23 2 4 0.25 1 0 1
..........................................................TCAGTTTTCCCAGGAATCC............................................................................................. 19 1 4 0.25 1 1 0
......................................................CTGTCCAGTTTTCCCAGGAATCC............................................................................................. 23 2 5 0.20 1 1 0
.....................................................GACGTCCAGTTTTCCCAGGAAT............................................................................................... 22 2 5 0.20 1 0 1
.......................................................AGTCCAGTTTTCCCAGGAATCA............................................................................................. 22 2 5 0.20 1 1 0
.......................................................AGGCCAGTTTTCCCAGGAATC.............................................................................................. 21 2 6 0.17 1 1 0
...........................................................CAGTTTTCCCAGGAAT............................................................................................... 16 0 6 0.17 1 0 1
.......................................................AGTCCAGTCTTCCCAGGAATCC............................................................................................. 22 2 6 0.17 1 1 0
.......................................................AGTCCAGATTTCCCAGGAATC.............................................................................................. 21 2 6 0.17 1 1 0
.......................................................AGTCCAGTTTTCACAGGAATC.............................................................................................. 21 2 8 0.13 1 1 0
......................................................AAGTCCAGTTTTCCCAGGAATC.............................................................................................. 22 2 8 0.13 1 1 0
........................................................GTCCAGTTTTCCCAGGAATCCTGA.......................................................................................... 24 3 8 0.13 1 1 0
......................................................AGGTCCAGTTTTCCCAGGAA................................................................................................ 20 1 9 0.11 1 1 0
..........................................................ACAGTTTTCCCAGGAATC.............................................................................................. 18 1 9 0.11 1 1 0
........................................................GTCCAGTTTTCCCAGAAAT............................................................................................... 19 1 11 0.09 1 0 1
.......................................................AGTCCAGTCTTCCCAGGAAT............................................................................................... 20 2 20 0.05 1 1 0
........................................................TTCCAGTTTTCCCAGGAATCT............................................................................................. 21 2 20 0.05 1 0 1
........................................................GTCCCGTTTTCCCAGGA................................................................................................. 17 1 20 0.05 1 0 1
.......................................................AGTCCTGTTTTCCCAGGAAT............................................................................................... 20 2 20 0.05 1 1 0

Anti-sense strand reads

GACCCCTGTGCACCCGGACCCCCAGGTGCCGGTGCGAACGGGTGGAACAGGAGCCCCAGGTCAAAAGGGTCCTTAGGGAATCTACGATTCTACCCCTAAGGACCTTTATGACAAGAACTCCAGTACCAAAGTGTCGACCGGGTCGCAACGGCCCCCCGGAGCCGAGTCGG
***************************************.(((.((.((((((((..((((.((.((((((((((((.............)))))))))))).)).)))).)))))))).)).)))...*****************************************
Read size # Mismatch Hit Count Total Norm Total GSM1528821
Adult_testes_Mili_IP
.........................................................TGCTCAAAAGGGTCCTTAGGGAATCTACGATTCT............................................................................... 34 2 1 1.00 1 1

Generated: 05/16/2015 at 12:43 AM