ID:

ocu-mir-141

 Coordinate:

chr8:32967348-32967419 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-52.3 -52.2 -51.9

Sense Strand Reads

AAGACATCTGCCCTGGCCTACAACCGGTGTTCCCACAACTGGCCGGCTCTGGGCCCATCTTCCAGCACAGTGTTGGATGGTCTACTTGTGAAGCTCCTAACACTGTCTGGTAAAGATGGCCCCCGGGTCGGCTTCCTCGGCAGTGACCTTCGGGGAGCCCTGGAGACCGGGA
****************************************(((((((((.(((.(((((((((((.(((((((((((...((.......))...))).))))))))))))..))))))).))).)))))))))..************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528821
Adult_testes_Mili_IP		 GSM1528820
Adult_testes
.................................................................................................TAACACTGTCTGGTAAAGATGGC.................................................... 23 0 1 129.00 129 126 3
.................................................................................................TAACACTGTCTGGTAACGATGC..................................................... 22 2 1 57.00 57 54 3
.................................................................................................TAACACTGTCTGGTAAAGATGG..................................................... 22 0 1 54.00 54 52 2
.................................................................................................TAACACTGTCTGGTAACGATG...................................................... 21 1 1 33.00 33 33 0
.....................................................................................................ACTGTCTGGTAAAGATGGC.................................................... 19 0 1 33.00 33 1 32
.................................................................................................TAACACTGTCTGGTAACGATGCT.................................................... 23 3 3 29.00 87 33 54
.....................................................................................................ACTGTCTGGTAAAGATGGCT................................................... 20 1 1 21.00 21 0 21
.................................................................................................TAACACTGTCTGGTAAAGATGGCT................................................... 24 1 1 19.00 19 19 0
.................................................................................................TAACACTGTCTGGTAAAGATGGCA................................................... 24 1 1 18.00 18 18 0
......................................................................................................CTGTCTGGTAAAGATGGC.................................................... 18 0 1 13.00 13 0 13
.................................................................................................TAACACTGTCTGGTAAAGATG...................................................... 21 0 1 10.00 10 10 0
.................................................................................................TAACACTGTCTGGTAAAGATGGCTT.................................................. 25 2 1 9.00 9 6 3
.....................................................................................................ACTGTCTGGTAAAGATGG..................................................... 18 0 1 9.00 9 0 9
.................................................................................................TAACACTGTCTGGTAAAGATGGA.................................................... 23 1 1 8.00 8 8 0
..................................................................................................AACACTGTCTGGTAAAGATGGC.................................................... 22 0 1 7.00 7 7 0
......................................................................................................CTGTCTGGTAAAGATGG..................................................... 17 0 2 7.00 14 0 14
.....................................................................................................ACTGTCTGGTAAAGATGGCA................................................... 20 1 1 7.00 7 0 7
..................................................................................................AACACTGTCTGGTAACGATGC..................................................... 21 2 1 6.00 6 6 0
.................................................................................................TAACACTGTCTGGTAAAGATGGCAT.................................................. 25 2 1 5.00 5 5 0
.................................................................................................TAACACTGTCTGGTAAAGATGGCAA.................................................. 25 2 1 5.00 5 4 1
....................................................................................................AACTGTCTGGTAAAGATGGC.................................................... 20 1 1 4.00 4 0 4
......................................................................................................CTGTCTGGTAAAGATGGCA................................................... 19 1 2 3.50 7 0 7
.....................................................................................................ACTGTCTGGTAAAGATGGCTT.................................................. 21 2 3 3.33 10 0 10
...................................................................................................ACACTGTCTGGTAAAGATGG..................................................... 20 0 1 3.00 3 3 0
......................................................................................................CTGTCTGGTAAAGATGGCT................................................... 19 1 4 3.00 12 0 12
.....................................................................................................ACTGTCTGGTAAAGATG...................................................... 17 0 1 3.00 3 0 3
................................................................................................ATAACACTGTCTGGTAACGATG...................................................... 22 2 1 3.00 3 3 0
....................................................................................................CACTGTCTGGTAAAGATGGC.................................................... 20 0 1 3.00 3 2 1
................................................................................................ATAACACTGTCTGGTAAAGATGGCT................................................... 25 2 1 3.00 3 3 0
.....................................................................................................ACTGTCTGGTAAAGATGGCCT.................................................. 21 1 1 3.00 3 0 3
..................................................................................................AACACTGTCTGGTAACGATG...................................................... 20 1 1 2.00 2 2 0
..................................................................................................AACACTGTCTGGTAAAGATGGCAA.................................................. 24 2 1 2.00 2 2 0
.................................................................................................TAACACTGTCTGGTAACGAT....................................................... 20 1 1 2.00 2 2 0
................................................................................................ATAACACTGTCTGGTAAAGATGGC.................................................... 24 1 1 2.00 2 2 0
................................................................................................ATAACACTGTCTGGTAAAGATGG..................................................... 23 1 1 2.00 2 2 0
.................................................................................................TAACACTGTCTGGGAAAGATGGC.................................................... 23 1 1 2.00 2 2 0
.......................................................CATCTTCCAGCACAGTGTTGGAT.............................................................................................. 23 0 1 2.00 2 0 2
..................................................................................................AACACTGTCTGGTAAAGATGGCA................................................... 23 1 1 2.00 2 2 0
..............................................................................................GCTTAACACTGTCTGGTAACGAT....................................................... 23 3 1 2.00 2 0 2
..................................................................................................AACACTGTCTGGTAAAGATGG..................................................... 21 0 1 2.00 2 2 0
................................................................................................ATAACACTGTCTGGTAAAGATG...................................................... 22 1 1 2.00 2 2 0
........................................................................................................GTCTGGTAAAGATGGC.................................................... 16 0 2 1.50 3 0 3
................................................................................................ATAACACTGTCTGGTAACGATGC..................................................... 23 3 2 1.50 3 3 0
................................................................................................ATAACACTGTCTGGTAAAGAGGGCA................................................... 25 3 1 1.00 1 1 0
.................................................................................................TAACACTGTCTGGTAAAGATGGT.................................................... 23 1 1 1.00 1 1 0
............................................................................................GTTGATAACACTGTCTGGTAAAGATGGC.................................................... 28 3 1 1.00 1 1 0
.................................................................................................TAACACTGTCTGGTAAAGATGGCTTA................................................. 26 3 1 1.00 1 1 0
.................................................................................................TGACACTGTCTGGTAAAGATGGC.................................................... 23 1 1 1.00 1 1 0
...........................................................................................ATATCCTAACACTGTCTGGTAAAGATG...................................................... 27 2 1 1.00 1 1 0
.................................................................................................CAACACTGTCTGGTAAAGATGGT.................................................... 23 2 1 1.00 1 1 0
.................................................................................................TAACACGGTCTGGTAAAGATGG..................................................... 22 1 1 1.00 1 1 0
.................................................................................................TAACACTATCTGGTAAAGATGGC.................................................... 23 1 1 1.00 1 1 0
.................................................................................................TAATACTGTCTGGTAAAGATGGC.................................................... 23 1 1 1.00 1 1 0
.................................................................................................TAACACTGTCTGGTAAAGATGGG.................................................... 23 1 1 1.00 1 1 0
....................................................................................................AACTGTCTGGTAAAGATGGCT................................................... 21 2 3 1.00 3 0 3
.............................................................................................GTCATAACACTGTCTGGTAACGATG...................................................... 25 3 1 1.00 1 1 0
...................................................................................................ACACTGTCTGGTAAAGATGGCT................................................... 22 1 1 1.00 1 1 0
..................................................................................................AACACTGTCTGGTAAAGGTGGCA................................................... 23 2 1 1.00 1 1 0
.....................................................................................................ACTGTCTGGTAAAGATGGCTA.................................................. 21 2 3 1.00 3 0 3
.......................................................CATCTTCCAGCACAGTGTTGGT............................................................................................... 22 1 1 1.00 1 0 1
.................................................................................................TAACACTGTCTGGTAAAGTTGGA.................................................... 23 2 1 1.00 1 1 0
.................................................................................................TAACACTGTCTGGTAAAGATGGCTTT................................................. 26 3 1 1.00 1 1 0
..................................................................................................AACACTGTCTGGTAAAGATG...................................................... 20 0 1 1.00 1 1 0
...................................................................................................ACACTGTCTGGTAAAGATGGCTT.................................................. 23 2 2 1.00 2 2 0
.....................................................................................................ACTGTCTGGTAAAGAT....................................................... 16 0 1 1.00 1 0 1
.........................................................................TGGATGGTCTACTTGTGAAGCTCCT.......................................................................... 25 0 1 1.00 1 1 0
.................................................................................................TAACACTGTCTGGTAAAGATAGCT................................................... 24 2 1 1.00 1 1 0
..............................................................................................GAATAACACTGTCTGGTAAAGATGG..................................................... 25 3 1 1.00 1 1 0
.................................................................................................TAACACTGTCTGGTAACGATGAA.................................................... 23 3 2 0.50 1 1 0
.....................................................................................................ACTGTCTGGTAAAGATGGT.................................................... 19 1 2 0.50 1 0 1
.................................................................................................TAATACTGTCAGGTAAAGATGTC.................................................... 23 3 6 0.50 3 3 0
..................................................................................................AACACTGTCTGGTAAAGATGGCTTT................................................. 25 3 2 0.50 1 0 1
......................................................................................................CTGTCTGGTAAAGATGGCTT.................................................. 20 2 13 0.46 6 0 6
....................................................................................................AACTGTCTGGTAAAGAT....................................................... 17 1 11 0.36 4 0 4
......................................................................................................CTGTCTGGTAAAGATGGCAA.................................................. 20 2 9 0.33 3 0 3
................................................................................................ATAACACTGTCTGGTAACGAT....................................................... 21 2 3 0.33 1 1 0
..................................................................................................AACACTGTCTGGTAACGATGCT.................................................... 22 3 9 0.33 3 0 3
..........................................................CTTCCAGCACAGTGTTGGC............................................................................................... 19 1 4 0.25 1 0 1
.................................................................................................TAACAATGTCTGGTAACGATGC..................................................... 22 3 4 0.25 1 1 0
........................................................................................................GTCTGGTAAAGATGGCCA.................................................. 18 1 5 0.20 1 0 1
.................................................................................................TAGCACTGTCTGGTAACGATGC..................................................... 22 3 6 0.17 1 1 0
......................................................................................................CTGTCTGGTAAAGATGGCAT.................................................. 20 2 12 0.17 2 0 2
....................................................................................................AACTGTCTGGTAAACATGGC.................................................... 20 2 9 0.11 1 0 1
.......................................................................................................TGTCTGGTAAAGATG...................................................... 15 0 9 0.11 1 0 1
.....................................................................................................ACTGTCTGGCAAAGATGGCT................................................... 20 2 10 0.10 1 0 1
.....................................................................................................ACTGTCTGGGAAAGATGGCT................................................... 20 2 14 0.07 1 0 1
........................................................................................................GTCTGGTAAAGATGGCT................................................... 17 1 15 0.07 1 0 1
......................................................................................................CTGTCTGGTAAAGATGGCTCTT................................................ 22 3 20 0.05 1 0 1
.....................................................................................................ACTGTCTGGAAAAGATGGCT................................................... 20 2 20 0.05 1 0 1

Anti-sense strand reads

TTCTGTAGACGGGACCGGATGTTGGCCACAAGGGTGTTGACCGGCCGAGACCCGGGTAGAAGGTCGTGTCACAACCTACCAGATGAACACTTCGAGGATTGTGACAGACCATTTCTACCGGGGGCCCAGCCGAAGGAGCCGTCACTGGAAGCCCCTCGGGACCTCTGGCCCT
*************************************(((((((((.(((.(((((((((((.(((((((((((...((.......))...))).))))))))))))..))))))).))).)))))))))..**************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:49 AM