ID:

ocu-mir-138-2

Coordinate:

chr5:13100645-13100715 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-43.8

mature

star

Sense Strand Reads

GGAGGAGCCCAGCGCAGAGGAGGCGCCGGCGTTGTCTGGTATGGTTGCTGCAGCTGGTGTTGTGAATCAGGCCGACGAGCAGCGCATCCTCTTACCCGGCTATTTCACGACACCAGGGTTGCATCATACCCATCCTCTCCAGGCGAGCCTCGCGGGAGCGGCGCCACACCA *********************************..((((((((.((.((..(((((((((((((...(((((..(((.((......)))))...)))))..))))))))))))).)).))))))))))......*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM1528820 Adult_testes	GSM1528821 Adult_testes_Mili_IP
...................................................AGCTGGTGTTGTGAATCAGGCC..................................................................................................	22	0	2	42.00	84	45	39
...................................................AGCTGGTGTTGTGAATCAGGC...................................................................................................	21	0	2	18.50	37	27	10
...................................................AGCTGGTGTTGTGAATCAGGCCG.................................................................................................	23	0	2	16.00	32	19	13
...................................................AGCTGGTGTTGTGAATCAGGCCGA................................................................................................	24	0	1	9.00	9	7	2
...................................................AGCTGGTGTTGTGAATCAGGCCGAT...............................................................................................	25	1	2	5.00	10	10	0
...................................................AGCTGGTGTTGTGAATCAG.....................................................................................................	19	0	2	3.50	7	7	0
....................................................GCTGGTGTTGTGAATCAGGCCGA................................................................................................	23	0	1	2.00	2	1	1
...................................................AGCTGGTGTTGTGAATCAGG....................................................................................................	20	0	2	2.00	4	3	1
...................................................AGCTGGGGTTGTGAATCAGGCC..................................................................................................	22	1	2	1.00	2	0	2
.................................................AAAGCTGGTGTTGTGAATCAGG....................................................................................................	22	2	2	1.00	2	2	0
......................................................................................................TTTCACGACACCAGGGTTGCATCAT............................................	25	0	1	1.00	1	0	1
...................................................AGCTGGAGTTGTGAATCAGGCCGA................................................................................................	24	1	1	1.00	1	1	0
...................................................AGCTGGTGTTGTGAATCAGGCCGACGAGC...........................................................................................	29	0	1	1.00	1	1	0
...................................................AGCTGGTGTTGCGAATCAGGCC..................................................................................................	22	1	2	0.50	1	0	1
.....................................................CTGGTGTTGTGAATCAGGC...................................................................................................	19	0	2	0.50	1	0	1
...................................................AGCTGGCGTTGTGAATCAGGC...................................................................................................	21	1	2	0.50	1	0	1
...................................................AGCTGGGGTTGTGAATCAGGC...................................................................................................	21	1	2	0.50	1	1	0
...................................................AGCTGGTGTTGTTAATCAGGCC..................................................................................................	22	1	2	0.50	1	1	0
...................................................AGCTGTTGTTGTGAATCAGGCCG.................................................................................................	23	1	2	0.50	1	0	1
...................................................AGCTGGAGTTGTGAATCAGGCCGAT...............................................................................................	25	2	2	0.50	1	1	0
...................................................AGCTGGAGTTGTGAATCAGGC...................................................................................................	21	1	2	0.50	1	1	0
...................................................AGCTGGTGTTGTGAATCAGGCCA.................................................................................................	23	1	2	0.50	1	0	1
...................................................AGCTGGTGTTGTGAATCAGGCCGATT..............................................................................................	26	2	2	0.50	1	1	0
....................................................GCTGGTGTTGTGAATCAGGCCG.................................................................................................	22	0	2	0.50	1	0	1

Anti-sense strand reads

CCTCCTCGGGTCGCGTCTCCTCCGCGGCCGCAACAGACCATACCAACGACGTCGACCACAACACTTAGTCCGGCTGCTCGTCGCGTAGGAGAATGGGCCGATAAAGTGCTGTGGTCCCAACGTAGTATGGGTAGGAGAGGTCCGCTCGGAGCGCCCTCGCCGCGGTGTGGT *********************************..((((((((.((.((..(((((((((((((...(((((..(((.((......)))))...)))))..))))))))))))).)).))))))))))......*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total

Generated: 05/16/2015 at 12:46 AM