ID:

ocu-mir-138-1

 Coordinate:

chr9:448083-448177 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-56.9 -56.2

Sense Strand Reads

CTAACCCAAATGCTTGCACCCCCTCCCAGCGGCGACGCCACGCCGGAGACAGCACGGTGCGGTGCAGCAGCTGGTGTTGTGAATCAGGCCGTTGCCACTCCGAGAACGGCTACTTCACAACACCAGGGTCGCACCCCACCACGGGCAGCGCCGGAACCAGCAGCGGCATCGGCAGCCAGCCAGCCACGCCCTCCA
***********************************.......((((.....((..((((.(((((.((..(((((((((((((...(((((((...........)))))))..))))))))))))).)).))))).))))....))....))))......*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
....................................................................AGCTGGTGTTGTGAATCAGGCCGT....................................................................................................... 24 0 1 56.00 56 49 7
....................................................................AGCTGGTGTTGTGAATCAGGCC......................................................................................................... 22 0 2 42.00 84 45 39
....................................................................AGCTGGTGTTGTGAATCAGGC.......................................................................................................... 21 0 2 18.50 37 27 10
....................................................................AGCTGGTGTTGTGAATCAGGCCG........................................................................................................ 23 0 2 16.00 32 19 13
....................................................................AGCTGGTGTTGTGAATCAGGCCGAT...................................................................................................... 25 1 2 5.00 10 10 0
....................................................................AGCTGGTGTTGTGAATCAGGCCGTT...................................................................................................... 25 0 1 5.00 5 4 1
....................................................................AGCTGGTGTTGTGAATCAG............................................................................................................ 19 0 2 3.50 7 7 0
....................................................................AGCTGGTGTTGTGAATCAGGCCGTTCGTA.................................................................................................. 29 3 1 2.00 2 0 2
....................................................................AGCTGGTGTTGTGAATCAGG........................................................................................................... 20 0 2 2.00 4 3 1
....................................................................AGCTGGTGTTGTGAATCAGGCCTTA...................................................................................................... 25 2 1 2.00 2 0 2
.....................................................................GCTGGTGTTGTGAATCAGGCCGT....................................................................................................... 23 0 1 2.00 2 2 0
.....................................................................GCTGGTGTTGTGAATCAGGCCGTT...................................................................................................... 24 0 1 1.00 1 1 0
....................................................................AGCTGGAGTTGTGAATCAGGCCGT....................................................................................................... 24 1 1 1.00 1 1 0
....................................................................AGCTGGGGTTGTGAATCAGGCCGT....................................................................................................... 24 1 1 1.00 1 1 0
....................................................................AGCTGGTGTTGTGAATCAGGCCGTTT..................................................................................................... 26 1 1 1.00 1 1 0
..................................................................AAAGCTGGTGTTGTGAATCAGG........................................................................................................... 22 2 2 1.00 2 2 0
....................................................................AGCTGGTGTTGTGAATCAGGCCGTAT..................................................................................................... 26 2 1 1.00 1 1 0
....................................................................AGCTGGTGTTGTGAATCACGCCGT....................................................................................................... 24 1 1 1.00 1 1 0
....................................................................AGCTGGAGTTGTGAATCAGGCCGTT...................................................................................................... 25 1 1 1.00 1 1 0
....................................................................AGCTGGGGTTGTGAATCAGGCC......................................................................................................... 22 1 2 1.00 2 0 2
....................................................................AGCTGGTGTTGCGAATCAGGCC......................................................................................................... 22 1 2 0.50 1 0 1
......................................................................CTGGTGTTGTGAATCAGGC.......................................................................................................... 19 0 2 0.50 1 0 1
....................................................................AGCTGGTGTTGTGAATCAGGCCGATT..................................................................................................... 26 2 2 0.50 1 1 0
....................................................................AGCTGTTGTTGTGAATCAGGCCG........................................................................................................ 23 1 2 0.50 1 0 1
....................................................................AGCTGGTGTTGTGAATCAGGCCA........................................................................................................ 23 1 2 0.50 1 0 1
....................................................................AGCTGGTGTTGTTAATCAGGCC......................................................................................................... 22 1 2 0.50 1 1 0
....................................................................AGCTGGCGTTGTGAATCAGGC.......................................................................................................... 21 1 2 0.50 1 0 1
....................................................................AGCTGGAGTTGTGAATCAGGCCGAT...................................................................................................... 25 2 2 0.50 1 1 0
....................................................................AGCTGGAGTTGTGAATCAGGC.......................................................................................................... 21 1 2 0.50 1 1 0
.....................................................................GCTGGTGTTGTGAATCAGGCCG........................................................................................................ 22 0 2 0.50 1 0 1
....................................................................AGCTGGGGTTGTGAATCAGGC.......................................................................................................... 21 1 2 0.50 1 1 0

Anti-sense strand reads

GATTGGGTTTACGAACGTGGGGGAGGGTCGCCGCTGCGGTGCGGCCTCTGTCGTGCCACGCCACGTCGTCGACCACAACACTTAGTCCGGCAACGGTGAGGCTCTTGCCGATGAAGTGTTGTGGTCCCAGCGTGGGGTGGTGCCCGTCGCGGCCTTGGTCGTCGCCGTAGCCGTCGGTCGGTCGGTGCGGGAGGT
***********************************.......((((.....((..((((.(((((.((..(((((((((((((...(((((((...........)))))))..))))))))))))).)).))))).))))....))....))))......*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:50 AM