ID:

ocu-mir-136

 Coordinate:

chrUn0352:10068-10129 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-45.3 -45.0 -45.0

Sense Strand Reads

CCTGCGCGCCTCTGCCTGCTGCCTCCATGGTGGTCTTGGATGAGCCCTCGGAGGACTCCATTTGTTTTGATGATGGATTCTTAGGCTCCATCATCGTCTCAAATGAGTCTTCAGAGGGTTCTATCTTGTCGTCGGCGGGAAGTGCTGTTTTCTGAAGACTGG
***************************************..((((((((.((((((((.(((((...((((((((((.((...)).))))))))))...))))))))))))).))))))))....************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
......................................................ACTCCATTTGTTTTGATGATGGA..................................................................................... 23 0 1 1956.00 1956 1951 5
......................................................ACTCCATTTGTTTTGATGATGGAA.................................................................................... 24 1 1 264.00 264 264 0
......................................................ACTCCATTTGTTTTGATGAT........................................................................................ 20 0 1 263.00 263 249 14
......................................................ACTCCATTTGTTTTGATGATG....................................................................................... 21 0 1 113.00 113 49 64
......................................................ACTCCATTTGTTTTGATGATGG...................................................................................... 22 0 1 77.00 77 30 47
.......................................................CTCCATTTGTTTTGATGATGGA..................................................................................... 22 0 1 56.00 56 56 0
......................................................ACTCCATTTGTTTTGATGATGGT..................................................................................... 23 1 1 56.00 56 56 0
......................................................ACTCCATTTGTTTTGATGATGGAG.................................................................................... 24 1 1 41.00 41 41 0
......................................................ACTCCATTTGTTTTGATGATGGAT.................................................................................... 24 0 1 27.00 27 27 0
.....................................................AACTCCATTTGTTTTGATGATGGA..................................................................................... 24 1 1 13.00 13 13 0
....................................................GGACTCCATTTGTTTTGATGAT........................................................................................ 22 0 1 11.00 11 11 0
.......................................................CTCCATTTGTTTTGATGATGGAA.................................................................................... 23 1 1 10.00 10 10 0
......................................................ACTCCATTTGTTTTGATGATGGAAA................................................................................... 25 2 1 8.00 8 8 0
...........................................................ATTTGTTTTGATGATGG...................................................................................... 17 0 1 7.00 7 6 1
..........................................................CATTTGTTTTGATGATGG...................................................................................... 18 0 1 7.00 7 7 0
...........................................................ATTTGTTTTGATGATGGA..................................................................................... 18 0 1 7.00 7 7 0
.....................................................AACTCCATTTGTTTTGATGAT........................................................................................ 21 1 1 5.00 5 5 0
..........................................................CATTTGTTTTGATGATGGA..................................................................................... 19 0 1 5.00 5 5 0
......................................................ACTCCATTTGTTTTGATGATGGTT.................................................................................... 24 1 1 5.00 5 5 0
..........................................................CATTTGTTTTGATGATG....................................................................................... 17 0 2 5.00 10 10 0
.......................................................CTCCATTTGTTTTGATGATGGAG.................................................................................... 23 1 1 5.00 5 5 0
.......................................................CTCCATTTGTTTTGATGAT........................................................................................ 19 0 1 5.00 5 5 0
.....................................................CACTCCATTTGTTTTGATGATGGA..................................................................................... 24 1 1 4.00 4 4 0
......................................................ACTCCGTTTGTTTTGATGATGGA..................................................................................... 23 1 1 4.00 4 4 0
.......................................................CTCCATTTGTTTTGATGATGG...................................................................................... 21 0 1 4.00 4 4 0
......................................................ACTACATTTGTTTTGATGATGGA..................................................................................... 23 1 1 4.00 4 4 0
.....................................................GACTCCATTTGTTTTGATGATGGATTC.................................................................................. 27 0 1 4.00 4 4 0
......................................................ACTCCCTTTGTTTTGATGATGGAA.................................................................................... 24 2 1 4.00 4 4 0
......................................................ACTCCATTTGTTTTGATGATGA...................................................................................... 22 1 1 3.00 3 3 0
......................................................ACTCCATTTGTTTTGATGATGGAAT................................................................................... 25 1 1 3.00 3 3 0
......................................................ACTCCCTTTGTTTTGATGATGGA..................................................................................... 23 1 1 3.00 3 3 0
.....................................................AACTCCATTTGTTTTGATGATGGAT.................................................................................... 25 1 1 3.00 3 3 0
.........................................................................................ATCATCGTCTCAAATGAGTCT.................................................... 21 0 1 3.00 3 3 0
.........................................................CCATTTGTTTTGATGATGG...................................................................................... 19 0 1 3.00 3 3 0
......................................................ACTCCATTTGTTTTGATGATA....................................................................................... 21 1 1 3.00 3 3 0
......................................................ACTCCATTTGTTTTGATGATGGAGA................................................................................... 25 2 1 3.00 3 3 0
......................................................ACTCCATTTGTTTTGATGATGAGT.................................................................................... 24 2 1 3.00 3 3 0
......................................................ACTCCATTTGTTTTGATGA......................................................................................... 19 0 1 3.00 3 0 3
............................................................TTTGTTTTGATGATGG...................................................................................... 16 0 3 2.33 7 7 0
.......................................................CTCCATTTGTTTTGATGATGGAC.................................................................................... 23 1 1 2.00 2 2 0
..................................................CAAAACTCCATTTGTTTTGATGATGGA..................................................................................... 27 3 2 2.00 4 4 0
....................................................GGACTCCATTTGTTTTGATGAC........................................................................................ 22 1 1 2.00 2 2 0
......................................................ACTCCATTTGTTTTGATGATGGGG.................................................................................... 24 2 1 2.00 2 2 0
......................................................ACTCCATTTGTTTTGACGATGGA..................................................................................... 23 1 1 2.00 2 2 0
...................................................AAAACTCCATTTGTTTTGATGATGGA..................................................................................... 26 2 1 2.00 2 2 0
...................................................CACACTCCATTTGTTTTGATGATGGA..................................................................................... 26 3 1 2.00 2 2 0
.......................................................CTCCATTTGTTTTGATGATG....................................................................................... 20 0 1 2.00 2 0 2
.......................................................CTCCATTTGTTTTGATGATGGT..................................................................................... 22 1 1 2.00 2 2 0
.........................................................CCATTTGTTTTGATGATGGA..................................................................................... 20 0 1 2.00 2 2 0
......................................................ACTCCATTTGTTTTGATG.......................................................................................... 18 0 1 2.00 2 1 1
.........................................................CCATTTGTTTTGATGATGGT..................................................................................... 20 1 1 2.00 2 2 0
......................................................ACTCCATTTGTTTTTATGATGGA..................................................................................... 23 1 2 2.00 4 4 0
..........................................................CATTTGTTTTGATGATGGAA.................................................................................... 20 1 1 2.00 2 2 0
........................................................TCCATTTGTTTTGATGATGGA..................................................................................... 21 0 1 2.00 2 2 0
.....................................................AACTCCATTTGTTTTGATGATG....................................................................................... 22 1 1 2.00 2 0 2
......................................................ACTCCGTTTGTTTTGATGATGGTT.................................................................................... 24 2 1 1.00 1 1 0
......................................................ACTCCATTTGTTTTGATGATGGAATCGTA............................................................................... 29 2 1 1.00 1 0 1
...................................................CGAACTCCATTTGTTTTGATGATGGA..................................................................................... 26 2 1 1.00 1 1 0
....................................................CAACTCCATTTGTTTTGATGATGGA..................................................................................... 25 2 1 1.00 1 1 0
......................................................ACTCCATATGTTTTGATGAT........................................................................................ 20 1 1 1.00 1 1 0
......................................................ACTCCATTTGTTTTGATGATTGA..................................................................................... 23 1 1 1.00 1 1 0
......................................................ACTCCATTTGTTTTGATGATGGAAAA.................................................................................. 26 3 2 1.00 2 2 0
.........................................................CCATTTGTTTTGATGATG....................................................................................... 18 0 1 1.00 1 1 0
......................................................ACTTCATTTGTTTTGATGATGGA..................................................................................... 23 1 1 1.00 1 1 0
......................................................ACTCCATTTGGTTTGATGATG....................................................................................... 21 1 1 1.00 1 0 1
......................................................ACTCCATTTGTTTTAATGATGGA..................................................................................... 23 1 1 1.00 1 1 0
......................................................ACTCCATTTGTTTTGATGATGGTA.................................................................................... 24 2 1 1.00 1 1 0
......................................................ACTCCATTTGTTTTGATGATGGATA................................................................................... 25 1 1 1.00 1 1 0
......................................................ACTCCATTTGTTTGGATGATGGA..................................................................................... 23 1 1 1.00 1 1 0
......................................................ACTCCATTTGTTTTGAAGATGG...................................................................................... 22 1 1 1.00 1 1 0
......................................................ACTCCATTTGTTTTGATGATAGA..................................................................................... 23 1 1 1.00 1 1 0
......................................................ACTCCATTTGTTTCGATGATGGAA.................................................................................... 24 2 1 1.00 1 1 0
......................................................ACTCCATTTGTTTTGATGATGGATT................................................................................... 25 0 1 1.00 1 1 0
......................................................ACTCCATTTGTTTTAATGATG....................................................................................... 21 1 1 1.00 1 0 1
......................................................ACTCCTTTTGTTTTGATGATGG...................................................................................... 22 1 1 1.00 1 0 1
.....................................................AACTCCATTTGTTTTGATGATGG...................................................................................... 23 1 1 1.00 1 0 1
.........................................................................................ATCATCGTCTCAAATGATTCT.................................................... 21 1 1 1.00 1 1 0
......................................................ACTCCATTTGTTTTGATGATGAA..................................................................................... 23 1 1 1.00 1 1 0
......................................................ACTCCATTTGTTTTGGTGATGGAA.................................................................................... 24 2 1 1.00 1 1 0
......................................................ACTCCATTTGTTTTGATGATGGC..................................................................................... 23 1 1 1.00 1 1 0
......................................................ACTCCATTTGTTTTGATGATGCA..................................................................................... 23 1 1 1.00 1 1 0
....................................................CGACTCCATTTGTTTTGATGATGGA..................................................................................... 25 1 1 1.00 1 1 0
......................................................ACTCCATTTGTTTTGCTGATGGA..................................................................................... 23 1 1 1.00 1 1 0
......................................................ACCCCATTTGTTTTGATGATGGA..................................................................................... 23 1 1 1.00 1 1 0
......................................................ACTCAATTTGTTTTGATGATGGAA.................................................................................... 24 2 1 1.00 1 1 0
..........................................................CATTTGTTTTGATGATGGAG.................................................................................... 20 1 1 1.00 1 1 0
.........................................................CCATTTGTTTTGATGATGGACT................................................................................... 22 1 1 1.00 1 1 0
.......................................................CTCCCTTTGTTTTGATGATGG...................................................................................... 21 1 1 1.00 1 1 0
.......................................................CTCCATTTGTTTTGATGATGGAT.................................................................................... 23 0 1 1.00 1 1 0
......................................................ACTCCATTTGGTTTGATGATGGA..................................................................................... 23 1 1 1.00 1 1 0
......................................................ACTCCATTTGTTTTGCTGATGGAA.................................................................................... 24 2 1 1.00 1 1 0
......................................................ACTCCATTTGTTTTGATGATGGCG.................................................................................... 24 2 1 1.00 1 1 0
...................................................ATGACTCCATTTGTTTTGAT........................................................................................... 20 1 2 1.00 2 2 0
......................................................ACTCCATCTGTTTTGATGATGGA..................................................................................... 23 1 1 1.00 1 1 0
......................................................ACTCCATTTGTTTTGATGAGGGA..................................................................................... 23 1 1 1.00 1 1 0
......................................................ACTCCATTTGTTTTGATGATGGAC.................................................................................... 24 1 1 1.00 1 1 0
......................................................ACTCCATTTGTTTTGATGAA........................................................................................ 20 1 1 1.00 1 1 0
......................................................ACTCCATTTATTTTGATGATGGA..................................................................................... 23 1 1 1.00 1 1 0
............................................................................................ATCGTCTCAAATGAGTCT.................................................... 18 0 1 1.00 1 1 0
......................................................AATCCATTTGTTTTGATGATGGA..................................................................................... 23 1 1 1.00 1 1 0
........................................................................................CATCATCGTCTCAAATGAGTCT.................................................... 22 0 1 1.00 1 1 0
......................................................ACTCCATTTGCTTTGATGATGGA..................................................................................... 23 1 1 1.00 1 1 0
.............................................................TTGTTTTGATGATGGA..................................................................................... 16 0 2 0.50 1 1 0
......................................................ACTACATTTGTTTTGATGATGGAA.................................................................................... 24 2 2 0.50 1 1 0
......................................................ACTCCATATGTTTTGATGATGGAAA................................................................................... 25 3 2 0.50 1 1 0
............................................................................................ATCGTCTCCAATGAGTCT.................................................... 18 1 2 0.50 1 1 0
......................................................ACTACATTTGTTTTGATGATG....................................................................................... 21 1 2 0.50 1 1 0
......................................................ACTCCATTTGTTTTGATGACGGA..................................................................................... 23 1 2 0.50 1 1 0
...........................................................ATTTGTTTTGATGATG....................................................................................... 16 0 2 0.50 1 1 0
......................................................ACTCCATTTGTTTTGAT........................................................................................... 17 0 2 0.50 1 1 0
..........................................................CATTTGTTTTGATGAT........................................................................................ 16 0 8 0.38 3 3 0
......................................................ACTCCCTTTGTTTTGATGAT........................................................................................ 20 1 3 0.33 1 1 0
...........................................................ATTTGTTTTGATGAT........................................................................................ 15 0 20 0.30 6 6 0
......................................................ACTCCATTTGTTTTGCTGAT........................................................................................ 20 1 5 0.20 1 1 0
.............................................................TTGTTTTGATGATGG...................................................................................... 15 0 9 0.11 1 1 0
..........................................................CATTTGTTTTGATGA......................................................................................... 15 0 18 0.06 1 1 0

Anti-sense strand reads

GGACGCGCGGAGACGGACGACGGAGGTACCACCAGAACCTACTCGGGAGCCTCCTGAGGTAAACAAAACTACTACCTAAGAATCCGAGGTAGTAGCAGAGTTTACTCAGAAGTCTCCCAAGATAGAACAGCAGCCGCCCTTCACGACAAAAGACTTCTGACC
*************************************..((((((((.((((((((.(((((...((((((((((.((...)).))))))))))...))))))))))))).))))))))....*************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:58 AM