ID:

ocu-mir-135a-1

 Coordinate:

chr9:19378410-19378499 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-50.2 -50.1 -50.1
mature
  1. chr4:76791386-76791406 +
  2. chr9:19378463-19378483 -
star

Sense Strand Reads

AGGGAGGAAGAGAGGGTGGGGATGGAGGAAGAGCCCACAGGAGCAGCCCCAGGCCTCGCTGTTCTCTATGGCTTTTTATTCCTATGTGATTCTACTGCTCACTCATATAGGGATTGGAGCCGTGGCGCACGGCGGGGATGGCCAGCGGAGGGCTCTGATACTGAGCAAGAGGGCCCCAAAGAGAATAGAG
***********************************.....((((..((((.(((((((((((...((((((((((..((((((((((((.............)))))))))))).))))))))))...)))))))....))))...)).))))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
..................................................................TATGGCTTTTTATTCCTATGT....................................................................................................... 21 0 2 35.50 71 43 28
.................................................................ATATGGCTTTTTATTCCTATGT....................................................................................................... 22 1 2 13.00 26 0 26
..................................................................TATGGCTTTTTATTCCTATGTGA..................................................................................................... 23 0 2 10.00 20 20 0
..................................................................TATGGCTTTTTATTCCTATGTG...................................................................................................... 22 0 2 4.00 8 1 7
..................................................................TATGGCTTTTTATTCCTAT......................................................................................................... 19 0 2 3.00 6 1 5
...................................................................ATGGCTTTTTATTCCTATGT....................................................................................................... 20 0 2 2.00 4 4 0
..................................................................TATGGCTTTTTATTCCTATGTGAA.................................................................................................... 24 1 2 1.00 2 2 0
..................................................................TATGGCTTTTTATTCCTATGTGAAT................................................................................................... 25 1 1 1.00 1 0 1
..............................................................TCGATATGGCTTTTTATTCCTATGT....................................................................................................... 25 2 1 1.00 1 0 1
..................................................................TATGGCTTTTTATTCCTATG........................................................................................................ 20 0 2 1.00 2 0 2
..................................................................TATGGCTTTTTATTCCTATGTGAT.................................................................................................... 24 0 2 1.00 2 2 0
................................................................GATATGGCTTTTTATTCCTATGT....................................................................................................... 23 2 2 1.00 2 2 0
..................................................................TATGGCTTTTTATTCCTATGTGT..................................................................................................... 23 1 2 1.00 2 2 0
...................................................................ATGGCTTTTTATTCCTAT......................................................................................................... 18 0 2 0.50 1 0 1
..................................................................TATGGCTCTTTATTCCTATGTG...................................................................................................... 22 1 2 0.50 1 0 1
.................................................................ATATGGCTTTTTATTCCTATG........................................................................................................ 21 1 2 0.50 1 0 1
....................................................................TGGCTTTTTATTCCTATGT....................................................................................................... 19 0 2 0.50 1 1 0
..................................................................GATGGCTTTTTATTCCTATGT....................................................................................................... 21 1 2 0.50 1 0 1
.............................................................GGCCCTATGGCTTTTTATTCCTATGT....................................................................................................... 26 3 3 0.33 1 0 1
.................................................................ATATGGCTTTTTATTCCTAT......................................................................................................... 20 1 3 0.33 1 0 1
..................................................................AATGGCTTTTTATTCCTAT......................................................................................................... 19 1 6 0.17 1 0 1

Anti-sense strand reads

TCCCTCCTTCTCTCCCACCCCTACCTCCTTCTCGGGTGTCCTCGTCGGGGTCCGGAGCGACAAGAGATACCGAAAAATAAGGATACACTAAGATGACGAGTGAGTATATCCCTAACCTCGGCACCGCGTGCCGCCCCTACCGGTCGCCTCCCGAGACTATGACTCGTTCTCCCGGGGTTTCTCTTATCTC
***********************************.....((((..((((.(((((((((((...((((((((((..((((((((((((.............)))))))))))).))))))))))...)))))))....))))...)).))))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528821
Adult_testes_Mili_IP
.........................................................CGACAAGAGATACCGAAAAATAA.............................................................................................................. 23 0 1 1.00 1 1

Generated: 05/16/2015 at 12:50 AM