ID:

ocu-mir-133a-2

Coordinate:

chr9:63180509-63180598 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.7

Sense Strand Reads

CACAAATGAAAAGCATTTAACTGTTTTGGATTCCAAACTAACAGCACTACAATGCTTTGCTAGAGCTGGTAAAATGGAACCAAATCGCCTCTTCAATGGATTTGGTCCCCTTCAACCAGCTGTAGCTATGCATTGATTACTACAGGACAGCCAACATTTTCATTCATGAATGTCAATCACATATCAACTA
*************************************************((((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...))))))...****************************************************
Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes
GSM1528821
Adult_testes_Mili_IP
.....................................................................................................TTGGTCCCCTTCAACCAGCTGT................................................................... 22 0 1 9.00 9 9 0
......................................................................................................TGGTCCCCTTCAACCAGCTGT................................................................... 21 0 1 8.00 8 8 0
....................................................................................................TTTGGTCCCCTTCAACCAGCTGT................................................................... 23 0 1 5.00 5 5 0
.....................................................................................................TTGGTCCCCTTCAACCAGCTGAT.................................................................. 23 2 1 3.00 3 3 0
....................................................................................................ATTGGTCCCCTTCAACCAGCTGT................................................................... 23 1 1 3.00 3 2 1
.....................................................................................................ATGGTCCCCTTCAACCAGCTGA................................................................... 22 2 1 2.00 2 0 2
................................................................GCTGGTAAAATGGAACCAAA.......................................................................................................... 20 0 1 2.00 2 2 0
......................................................................................................TGGTCCCCTTCAACCAGCTGTT.................................................................. 22 1 1 1.00 1 1 0
....................................................................................................ATTGGTCCCCTTCAACCAGCTGA................................................................... 23 2 1 1.00 1 0 1
....................................................................................................TTTGGTCCCCTTCAACCAGCT..................................................................... 21 0 2 1.00 2 2 0
.....................................................................................................TTGGTCCCCTTCAACCAGCT..................................................................... 20 0 2 1.00 2 2 0
......................................................................................................GGGTCCCCTTCAACCAGCTGTT.................................................................. 22 2 2 0.50 1 1 0
.....................................................................................................TCGGTCCCCTTCAACCAGCTGAT.................................................................. 23 3 4 0.25 1 1 0
....................................................................................................ATTGGGCCCCTTCAACCAGCT..................................................................... 21 2 5 0.20 1 0 1

Anti-sense strand reads

GTGTTTACTTTTCGTAAATTGACAAAACCTAAGGTTTGATTGTCGTGATGTTACGAAACGATCTCGACCATTTTACCTTGGTTTAGCGGAGAAGTTACCTAAACCAGGGGAAGTTGGTCGACATCGATACGTAACTAATGATGTCCTGTCGGTTGTAAAAGTAAGTACTTACAGTTAGTGTATAGTTGAT
****************************************************((((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...))))))...*************************************************
Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:50 AM