ID:

ocu-mir-127

 Coordinate:

chrUn0352:7895-7964 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-37.4 -37.2 -37.1

Sense Strand Reads

AGGGCGCGGTGGAGGGACACTCGTAGAAGGTCTCGCTGTGATCACTGTCTCCAGCCTGCTGAAGCTCAGAGGGCTCTGATTCAGAAAGATCATCGGATCCGTCTGAGCTTGGCTGGTCGGAAGTCTCCTCATCTGCTTCCTTCGGGTTAAACACGTCGGCCAGGTCTGAG
*******************************************......(((.(((.(((.(((((((((.((.((((((((.....))..)))))).)).)))))))))))).))).))).......****************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
............................................................................................TCGGATCCGTCTGAGCTTGGC......................................................... 21 0 1 1112.00 1112 1109 3
............................................................................................TCGGATCCGTCTGAGCTTGGCT........................................................ 22 0 1 429.00 429 422 7
..........................................................CTGAAGCTCAGAGGGCTCTGAT.......................................................................................... 22 0 1 369.00 369 369 0
............................................................................................TCGGATCCGTCTGAGCTTGGT......................................................... 21 1 1 160.00 160 160 0
...........................................................................................ATCGGATCCGTCTGAGCTTGGCT........................................................ 23 0 1 106.00 106 106 0
............................................................................................TCGGATCCGTCTGAGCTTGG.......................................................... 20 0 1 85.00 85 82 3
............................................................................................TCGGATCCGTCTGAGCTTGGCTT....................................................... 23 1 1 73.00 73 71 2
.............................................................................................CGGATCCGTCTGAGCTTGGC......................................................... 20 0 1 68.00 68 68 0
............................................................................................TCGGATCCGTCTGAGCTTGGA......................................................... 21 1 1 53.00 53 53 0
..........................................................CTGAAGCTCAGAGGGCTCTGATT......................................................................................... 23 0 1 41.00 41 41 0
...........................................................................................ATCGGATCCGTCTGAGCTTGGT......................................................... 22 1 1 27.00 27 27 0
...........................................................................................ATCGGATCCGTCTGAGCTTGGC......................................................... 22 0 1 21.00 21 20 1
............................................................................................TCGGATCCGTCTGAGCTTGGAT........................................................ 22 1 1 20.00 20 19 1
...........................................................................................ATCGGATCCGTCTGAGCTTGGCTT....................................................... 24 1 1 20.00 20 20 0
............................................................................................TCGGATCCGTCTGAGCTTGGCTTT...................................................... 24 2 1 19.00 19 19 0
.............................................................................................CGGATCCGTCTGAGCTTGGCT........................................................ 21 0 1 17.00 17 17 0
............................................................................................TCGGATCCGTCTGAGCTTGGCA........................................................ 22 1 1 16.00 16 16 0
............................................................................................TCGGATCCGTCTGAGCTTGGCAT....................................................... 23 2 1 13.00 13 13 0
............................................................................................TCGGATCCGTCTGAGCTTGGAA........................................................ 22 2 1 12.00 12 12 0
............................................................................................TCGGATCCGTCTGAGCTTGA.......................................................... 20 1 1 12.00 12 12 0
...........................................................TGAAGCTCAGAGGGCTCTGAT.......................................................................................... 21 0 1 11.00 11 11 0
...........................................................................................ATCGGATCCGTCTGAGCTTGG.......................................................... 21 0 1 11.00 11 10 1
............................................................GAAGCTCAGAGGGCTCTGAT.......................................................................................... 20 0 1 10.00 10 10 0
...........................................................................................ATCGGATCCGTCTGAGCTTGGA......................................................... 22 1 1 9.00 9 9 0
............................................................................................TCGGATCCGTCTGAGCTTGGTT........................................................ 22 1 1 9.00 9 9 0
............................................................................................TCGGATCCGTCTGAGCTTGGCTAT...................................................... 24 2 1 9.00 9 9 0
............................................................GAAGCTCAGAGGGCTCTGATT......................................................................................... 21 0 1 9.00 9 9 0
..........................................................CTGAAGCTCAGAGGGCTCTGA........................................................................................... 21 0 1 8.00 8 6 2
............................................................................................TCGGATCCGTCTGAGCTTGT.......................................................... 20 1 1 8.00 8 8 0
...........................................................TGAAGCTCAGAGGGCTCTGATT......................................................................................... 22 0 1 7.00 7 7 0
............................................................................................TCGGATCCGTCTGAGCTTG........................................................... 19 0 1 7.00 7 7 0
.............................................................................................CGGATCCGTCTGAGCTTGGT......................................................... 20 1 1 7.00 7 7 0
............................................................GAAGCTCAGAGGGCTCTGATTC........................................................................................ 22 0 1 7.00 7 7 0
...........................................................................................ATCGGATCCGTCTGAGCTTG........................................................... 20 0 1 5.00 5 5 0
............................................................................................TCGGCTCCGTCTGAGCTTGGC......................................................... 21 1 1 5.00 5 5 0
............................................................................................TCGGATCCGTCTGAGCTTGAT......................................................... 21 2 1 5.00 5 5 0
.........................................................ACTGAAGCTCAGAGGGCTCTGAT.......................................................................................... 23 1 1 4.00 4 4 0
.............................................................AAGCTCAGAGGGCTCTGAT.......................................................................................... 19 0 1 4.00 4 4 0
............................................................................................TCGGATCCGTCTGAGCTTGTC......................................................... 21 1 1 4.00 4 4 0
............................................................GAAGCTCAGAGGGCTCTGATTCA....................................................................................... 23 0 1 4.00 4 4 0
............................................................................................GCGGATCCGTCTGAGCTTGGC......................................................... 21 1 1 4.00 4 4 0
............................................................................................TCGGATCCGTCTGATCTTGGC......................................................... 21 1 1 4.00 4 4 0
............................................................................................TCGGATCCGTCTGAGCT............................................................. 17 0 1 3.00 3 3 0
............................................................................................TCGGATCCGTCTGAGCTTGGCTAA...................................................... 24 2 1 3.00 3 3 0
..........................................................CTGAAGCTCAGAGGGCTCTG............................................................................................ 20 0 1 3.00 3 2 1
............................................................................................TCGGATCCGTCTGAGCTT............................................................ 18 0 1 3.00 3 3 0
............................................................................................TCGGATCCGTCTGAGCTTGGCTTTT..................................................... 25 2 1 3.00 3 3 0
..........................................................CTGAAGCTCAGAGGGCTCTGAA.......................................................................................... 22 1 1 3.00 3 3 0
............................................................................................TCGGATCCGGCTGAGCTTGGC......................................................... 21 1 1 3.00 3 3 0
............................................................................................TCGGATCCGTCTGAGCTTGGTGGT...................................................... 24 3 1 3.00 3 3 0
...........................................................................................ATCGGATCCGTCTGAGCTTGGCTTT...................................................... 25 2 1 3.00 3 3 0
............................................................................................TCGGCTCCGTCTGAGCTTGGCT........................................................ 22 1 1 2.00 2 2 0
............................................................................................TCGGATCCGTCTGAGCTTGGCTA....................................................... 23 1 1 2.00 2 2 0
............................................................................................TCGGACCCGTCTGAGCTTGGC......................................................... 21 1 1 2.00 2 2 0
............................................................................................TCGGATCCGTCTGAGCTTGGCAA....................................................... 23 2 1 2.00 2 2 0
............................................................................................TCGGATCCGTCTGAGC.............................................................. 16 0 1 2.00 2 2 0
............................................................................................TCGGATCCGTCTGAGCTTGTA......................................................... 21 2 1 2.00 2 2 0
..........................................................CTGAAGCTCAGAGGGCTCTGATAC........................................................................................ 24 1 1 2.00 2 2 0
..........................................................CTGAAGCTCAGCGGGCTCTGAT.......................................................................................... 22 1 1 2.00 2 2 0
...............................................................................................GATCCGTCTGAGCTTGGCTTT...................................................... 21 2 1 2.00 2 2 0
.............................................................................................CGGATCCGTCTGAGCTTTGC......................................................... 20 1 1 2.00 2 2 0
..........................................................CTGAAGCTCAGAGGGCTCTGATTT........................................................................................ 24 1 1 2.00 2 2 0
............................................................................................TCGGATCCGCCTGAGCTTGGCT........................................................ 22 1 1 2.00 2 2 0
............................................................................................TCGGATCCGTCTGAGCTCGGCT........................................................ 22 1 1 1.00 1 1 0
............................................................................................GCGGATCCGTCTGAGCTTGGT......................................................... 21 2 1 1.00 1 1 0
............................................................................................TCGGCTCCGTCTGAGCTTGG.......................................................... 20 1 1 1.00 1 1 0
............................................................................................TCGGATCCGTCTGAGCTTGGAAT....................................................... 23 3 1 1.00 1 1 0
............................................................................................TCGGATCCGTCTGAGCCTGGCT........................................................ 22 1 1 1.00 1 1 0
............................................................................................TCGGTTCCGTCTGAGCTTGG.......................................................... 20 1 1 1.00 1 1 0
............................................................................................TTGGATCCGTCTGAGCTTGGC......................................................... 21 1 1 1.00 1 1 0
..........................................................CTGAAGCTCCGAGGGCTCTGAT.......................................................................................... 22 1 1 1.00 1 1 0
............................................................................................TCGCATCCGTCTGAGCTTGGCT........................................................ 22 1 1 1.00 1 1 0
............................................................................................TCGGGTCCGTCTGAGCTTGGC......................................................... 21 1 1 1.00 1 1 0
............................................................................................TCGGATCCGTCTGAGCTTGGCTAC...................................................... 24 2 1 1.00 1 1 0
............................................................................................TCGGATCCGTCCGAGCTTGGT......................................................... 21 2 1 1.00 1 1 0
............................................................................................TCGGATCCTTCTGAGCTTGGAT........................................................ 22 2 1 1.00 1 1 0
.............................................................................................CGGATCCGTCTGAGCTTGTC......................................................... 20 1 1 1.00 1 1 0
............................................................................................TCGGATCCGTCTGAGCTTGGTTT....................................................... 23 2 1 1.00 1 1 0
............................................................................................TCGGATCCGTCTGAGCTTGGCC........................................................ 22 1 1 1.00 1 1 0
.........................................................GCTGAAGCTCAGAGGGCTCTGTT.......................................................................................... 23 1 1 1.00 1 1 0
............................................................................................TCGGATCCGTCTGCGCTTGGCTAT...................................................... 24 3 1 1.00 1 1 0
............................................................................................TCGGATCCGTCTGAGTTTGGA......................................................... 21 2 1 1.00 1 1 0
............................................................................................TCGGATTCGTCTGAGCTTGGC......................................................... 21 1 1 1.00 1 1 0
............................................................................................TCGGATCCGTCTGAGCTTGGCTC....................................................... 23 1 1 1.00 1 1 0
...........................................................................................ATCGGATCTGTCTGAGCTTGGCTT....................................................... 24 2 1 1.00 1 1 0
............................................................................................TCGGATCCTTCTGAGCTTGGC......................................................... 21 1 1 1.00 1 1 0
...........................................................................................ATCGGATCCGTCTGAGCTTGGCGT....................................................... 24 2 1 1.00 1 1 0
............................................................................................TCGGATCCGTCTTAGCTTGGCT........................................................ 22 1 1 1.00 1 1 0
..........................................................CTGAAGCTCAGATGGCTCTGAT.......................................................................................... 22 1 1 1.00 1 1 0
............................................................................................TCGGATCCGTCTGAGCTTGCCT........................................................ 22 1 1 1.00 1 1 0
..........................................................CTGAAGCTCAGAGGGCTCCGAT.......................................................................................... 22 1 1 1.00 1 1 0
.............................................................................................CGGATCCGTCTGGGCTTGGC......................................................... 20 1 1 1.00 1 1 0
............................................................................................ACGGATCCGTCTGAGCTTGGCT........................................................ 22 1 1 1.00 1 1 0
............................................................................................TCGGGTCCGTCTGAGCTTGGCT........................................................ 22 1 1 1.00 1 1 0
............................................................................................TCGGATCCGTCTGAGCTTCGAT........................................................ 22 2 1 1.00 1 1 0
...........................................................................................ATCGGATCCGTCTGAGCTT............................................................ 19 0 1 1.00 1 1 0
.............................................................................................CGGACCCGTCTGAGCTTGGC......................................................... 20 1 1 1.00 1 1 0
..........................................................CTGAAGCTCAGATGGCTCTGAA.......................................................................................... 22 2 3 1.00 3 3 0
............................................................................................TCGTATCCGTCTGAGCTTGGC......................................................... 21 1 1 1.00 1 1 0
............................................................................................TCAGATCCGTCTGAGCTTGGCT........................................................ 22 1 1 1.00 1 1 0
............................................................................................TCGGATCCGTCTGAGCTTGC.......................................................... 20 1 1 1.00 1 1 0
............................................................................................TCGGCTCCGTCTGAGCTTGGT......................................................... 21 2 1 1.00 1 1 0
..........................................................CTGAAGCTCAGAGGGCTCCGA........................................................................................... 21 1 1 1.00 1 1 0
............................................................................................TCGGTTCCGTCTGAGCTTGGC......................................................... 21 1 1 1.00 1 1 0
............................................................................................TCGGATCCGTCTGAGCTTGAA......................................................... 21 2 1 1.00 1 1 0
............................................................................................TCGGATCTGTCTGAGCTTGGC......................................................... 21 1 1 1.00 1 1 0
.............................................................................................CGGATCCGTCAGAGCTTGGC......................................................... 20 1 1 1.00 1 1 0
..........................................................CTGACGCTCAGAGGGCTCTGAT.......................................................................................... 22 1 1 1.00 1 1 0
............................................................................................TCGGATCCGTCTGAGCTTGGCTGT...................................................... 24 1 1 1.00 1 1 0
................................................................CTCAGAGGGCTCTGAT.......................................................................................... 16 0 2 1.00 2 2 0
............................................................................................TCGGATCCGTCTCAGCTTGGAT........................................................ 22 2 1 1.00 1 1 0
............................................................................................TCGGATCCGTCTGACCTTGGC......................................................... 21 1 1 1.00 1 1 0
..........................................................CTGAAGCTCAGAGGGCTCT............................................................................................. 19 0 1 1.00 1 1 0
............................................................................................TCGGATCCGCCTGAGCTTGGC......................................................... 21 1 1 1.00 1 1 0
............................................................................................TCGGATTCGTCTGAGCTTGGCT........................................................ 22 1 1 1.00 1 1 0
............................................................GAAGCTCAGAGGGCTCTGATTCT....................................................................................... 23 1 1 1.00 1 1 0
........................................................TGCTGAAGCTCAGAGGGCTCTTT........................................................................................... 23 2 1 1.00 1 1 0
............................................................................................TCGGATCCGTCTGAGCTTGGCTATA..................................................... 25 3 1 1.00 1 1 0
............................................................................................TAGGATCCGTCTGAGCTTGG.......................................................... 20 1 1 1.00 1 1 0
............................................................................................TCGGATCCGCCTGAGCTTGGCTC....................................................... 23 2 1 1.00 1 1 0
............................................................................................TCGGATCCGTCTAAGCTTGGCT........................................................ 22 1 1 1.00 1 1 0
..........................................................CTGCAGCTCAGAGGGCTCTGAT.......................................................................................... 22 1 1 1.00 1 1 0
.............................................................................................CGGATACGTCTGAGCTTGGC......................................................... 20 1 1 1.00 1 1 0
............................................................................................TCGGATACGTCTGAGCTTGGC......................................................... 21 1 1 1.00 1 1 0
............................................................................................TCGGATCCATCTGAGCTTGGCT........................................................ 22 1 1 1.00 1 1 0
............................................................................................TCGGATCCGTCTGAGTTTGGCT........................................................ 22 1 1 1.00 1 1 0
..........................................................CTGAAGCTCAGAAGGCTCTGAT.......................................................................................... 22 1 1 1.00 1 1 0
............................................................................................TCGGATCCGTCTAAGCTTGGC......................................................... 21 1 1 1.00 1 1 0
...............................................................GCTCAGAGGGCTCTGAT.......................................................................................... 17 0 1 1.00 1 1 0
............................................................................................TCGGATCCGCCTGAGCTTGTAT........................................................ 22 3 2 0.50 1 1 0
..........................................................CTGAAGCTCAGAGGGCTTTGAT.......................................................................................... 22 1 2 0.50 1 1 0
..................................................................................................CCGTCTGAGCTTGGC......................................................... 15 0 2 0.50 1 1 0
..........................................................CTGAAGCTCAGAGGGCTCTGATGT........................................................................................ 24 2 2 0.50 1 1 0
............................................................................................GCGGATCCGTCTGAGCTTGGCA........................................................ 22 2 2 0.50 1 1 0
.............................................................................................CGGATCCGTCTGAGCTTGGTAT....................................................... 22 3 3 0.33 1 1 0
............................................................................................CCGGATCCGTCTGAGCTTGGAA........................................................ 22 3 4 0.25 1 1 0
.............................................................................................AGGATCCGTCTGAGCTTGGA......................................................... 20 2 5 0.20 1 1 0
............................................................................................TCGGATCCGGCTGAGCTTTGA......................................................... 21 3 10 0.10 1 1 0
.................................................................................................TCCGTCTGAGCTTGGT......................................................... 16 1 20 0.05 1 1 0

Anti-sense strand reads

TCCCGCGCCACCTCCCTGTGAGCATCTTCCAGAGCGACACTAGTGACAGAGGTCGGACGACTTCGAGTCTCCCGAGACTAAGTCTTTCTAGTAGCCTAGGCAGACTCGAACCGACCAGCCTTCAGAGGAGTAGACGAAGGAAGCCCAATTTGTGCAGCCGGTCCAGACTC
******************************************......(((.(((.(((.(((((((((.((.((((((((.....))..)))))).)).)))))))))))).))).))).......******************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:57 AM