ID:

ocu-mir-125b-1

 Coordinate:

chr1:95926693-95926769 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

mature
  1. chr1:95926707-95926726 +
  2. chr14:144598484-144598503 +
star

Sense Strand Reads

AATTGCCTGTCATTCTTGTTTTGCTTTGTTCTGTCTCAAGAAAAATTTCTTGCGCTCCTCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGAGTCGTGCCTTTGCATCTTGGAAATTTGGCGGAACTTTTTTCCCCCTT
*************************************************..((((..(((.((((.(((((((.(((((((((((..(((((.....))))).))))))))))).))))))).)))).)))..))))....************************************ 		Read size # Mismatch Hit Count Total Norm Total GSM1528821
Adult_testes_Mili_IP		 GSM1528820
Adult_testes
................................................................TCCCTGAGACCCTAACTTGT............................................................................................. 20 0 2 367.50 735 419 316
................................................................TCCCTGAGACCCTAACTTGTG............................................................................................ 21 0 2 84.50 169 78 91
................................................................TCCCTGAGACCCTAACTTGTGA........................................................................................... 22 0 2 54.50 109 43 66
...............................................................ATCCCTGAGACCCTAACTTGT............................................................................................. 21 1 2 36.00 72 65 7
................................................................TCCCTGAGACCCTAACTTG.............................................................................................. 19 0 2 34.00 68 34 34
................................................................TCCCTGAGACCCTAACTT............................................................................................... 18 0 2 25.50 51 33 18
........................................................................................................ACGGGTTAGGCTCTTGGGAGCT................................................... 22 0 1 23.00 23 2 21
........................................................................................................ACGGGTTAGGCTCTTGGGAGC.................................................... 21 0 1 16.00 16 0 16
.................................................................CCCTGAGACCCTAACTTGT............................................................................................. 19 0 2 10.50 21 16 5
...................................................................CTGAGACCCTAACTTGTG............................................................................................ 18 0 2 7.50 15 1 14
................................................................TCCCTGAGACCCTAACTTGTGAT.......................................................................................... 23 0 1 7.00 7 0 7
........................................................................................................ACGGGTTAGGCTCTTGGGAGT.................................................... 21 1 1 7.00 7 2 5
.................................................................CCCTGAGACCCTAACTTGTG............................................................................................ 20 0 2 6.50 13 7 6
...................................................................CTGAGACCCTAACTTGTGA........................................................................................... 19 0 2 6.50 13 0 13
........................................................................................................ACGGGTTAGGCTCTTGGGAG..................................................... 20 0 1 6.00 6 1 5
...............................................................ATCCCTGAGACCCTAACTTG.............................................................................................. 20 1 2 5.50 11 11 0
...............................................................ATCCCTGAGACCCTAACTTGTG............................................................................................ 22 1 2 5.00 10 7 3
...............................................................ATCCCTGAGACCCTAACTTGTGA........................................................................................... 23 1 2 4.50 9 5 4
..............................................................................................................................GCGAGTCGTGCCTTTGCATCT.............................. 21 0 1 4.00 4 0 4
.................................................................CCCTGAGACCCTAACTTGTGA........................................................................................... 21 0 2 3.50 7 6 1
................................................................TCCCTGAGACCCTAACTTGTGT........................................................................................... 22 1 2 3.50 7 0 7
...................................................................CTGATACCCTAACTTGTGAT.......................................................................................... 20 1 1 3.00 3 0 3
........................................................................................................ACGGGTTAGGCTCTTGGG....................................................... 18 0 1 3.00 3 0 3
..........................................................TCGGAATCCCTGAGACCCTAACTTGT............................................................................................. 26 3 2 2.50 5 5 0
.......................................................................GACCCTAACTTGTGAT.......................................................................................... 16 0 2 2.50 5 0 5
................................................................TCCCTGAGACCCTAACT................................................................................................ 17 0 2 2.50 5 2 3
................................................................TCCCTGAGACCCTAACTTGTGAA.......................................................................................... 23 1 2 2.50 5 1 4
...............................................................ATCCCTGAGACCCTAACTT............................................................................................... 19 1 2 2.50 5 3 2
.....................................................................GAGACCCTAACTTGTGA........................................................................................... 17 0 2 2.50 5 0 5
..........................................................ACTCAGTCCCTGAGACCCTAACTTGT............................................................................................. 26 1 1 2.00 2 2 0
.................................................................CCCTGAGACCCTAACTTG.............................................................................................. 18 0 2 2.00 4 4 0
...................................................................CTGAGACCCTAACTTGT............................................................................................. 17 0 2 2.00 4 2 2
..............................................................AATCCCTGAGACCCTAACTTGT............................................................................................. 22 1 2 2.00 4 2 2
.................................................................CCCTGAGACCCTAACTTGTGATCGTA...................................................................................... 26 3 1 2.00 2 2 0
........................................................................................................ACGGGTTAGGCTCTTGGGAGTA................................................... 22 2 1 2.00 2 0 2
....................................................................TGAGACCCTAACTTGT............................................................................................. 16 0 2 1.50 3 2 1
................................................................TCCCCGAGACCCTAACTTGT............................................................................................. 20 1 2 1.50 3 2 1
................................................................TCCCTGCGACCCTAACTTGT............................................................................................. 20 1 2 1.50 3 1 2
................................................................ACCCTGAGACCCTAACTTGT............................................................................................. 20 1 2 1.50 3 2 1
................................................................TTCCTGAGACCCTAACTTGT............................................................................................. 20 1 2 1.50 3 0 3
................................................................TCCCTGAGACCCTAACTTGTT............................................................................................ 21 1 2 1.50 3 0 3
...................................................................CTGAGACCCTAACTTGTGATCC........................................................................................ 22 2 2 1.50 3 0 3
.................................................................CCCTGAGACCCTAACTT............................................................................................... 17 0 3 1.33 4 1 3
.................................................................CCCTGAGACCCTAAC................................................................................................. 15 0 5 1.20 6 0 6
............................................................ACAATCCCTGAGACCCTAACTTGT............................................................................................. 24 2 1 1.00 1 1 0
................................................................TCCCTGAGACACTAACTTGTG............................................................................................ 21 1 2 1.00 2 0 2
...................................................................CTGAGACCCTAACTTGTGAA.......................................................................................... 20 1 3 1.00 3 0 3
...........................................................CGCAGTCCCTGAGACCCTAACTTGT............................................................................................. 25 1 1 1.00 1 1 0
................................................................CCCCTGAGACCCTAACTTGT............................................................................................. 20 1 2 1.00 2 1 1
................................................................TCACTGAGACCCTAACTTGT............................................................................................. 20 1 2 1.00 2 1 1
................................................................TCCCTGAGGCCCTAACTTGTGAT.......................................................................................... 23 1 1 1.00 1 0 1
............................................................TCGGTCCCTGAGACCCTAACTTG.............................................................................................. 23 1 1 1.00 1 1 0
........................................................................................................ACGGGTTAGGCTCTTGGTAGCTAT................................................. 24 3 1 1.00 1 0 1
..........................................................ACTCAGTTCCTGAGACCCTAACTTGT............................................................................................. 26 2 1 1.00 1 1 0
................................................................TCCCTGAGACCCTAGCTTGTGAT.......................................................................................... 23 1 1 1.00 1 0 1
................................................................TCCCTGAGACCCTAACTTGTGAC.......................................................................................... 23 1 2 1.00 2 0 2
..........................................................ATTCATTCCCTGAGACCCTAACTTGT............................................................................................. 26 3 1 1.00 1 1 0
...................................................................CTGAGACCCTAACTTGTGAT.......................................................................................... 20 0 1 1.00 1 0 1
...........................................................TTGGGTCCCTGAGACCCTAACTTGT............................................................................................. 25 3 1 1.00 1 1 0
...............................................................ATCCCTGCGACCCTAACTTGT............................................................................................. 21 2 2 1.00 2 2 0
..........................................................ATTCATTCCCTGAGACCCTAACTTGTG............................................................................................ 27 3 1 1.00 1 1 0
............................................................TCATTCCCTGAGACCCTAACTTGT............................................................................................. 24 1 1 1.00 1 1 0
................................................................TCCCTGAGACCCTAAC................................................................................................. 16 0 3 1.00 3 0 3
...........................................................AGCATTCCCTGAGACCCTAACTTGT............................................................................................. 25 3 2 1.00 2 2 0
.............................................................GAATCCCTGAGACCCTAACTTG.............................................................................................. 22 2 2 1.00 2 2 0
...............................................................ATCCCTGAGGCCCTAACTTGT............................................................................................. 21 2 3 0.67 2 2 0
................................................................TCCCTGAGACCCTAACTTGC............................................................................................. 20 1 3 0.67 2 1 1
................................................................TCCCTGGGACCCTAACTTGT............................................................................................. 20 1 2 0.50 1 1 0
................................................................TCCCTGAGACGCTAACTTGT............................................................................................. 20 1 2 0.50 1 0 1
.....................................................................GAGACCCTAACTTGT............................................................................................. 15 0 2 0.50 1 1 0
....................................................................TGAGACCCTAACTTGTGA........................................................................................... 18 0 2 0.50 1 0 1
.............................................................GGGTCCCTGAGACCCTAACTTGTG............................................................................................ 24 2 2 0.50 1 0 1
.............................................................AGGTCCCTGAGACCCTAACTTG.............................................................................................. 22 2 2 0.50 1 1 0
................................................................TCCCTGAGACCCTAACTTGGG............................................................................................ 21 1 2 0.50 1 1 0
................................................................TCCCTGAGAGCCTAACTTGTGA........................................................................................... 22 1 2 0.50 1 1 0
................................................................GCCCTGAGACCCTAACTTGT............................................................................................. 20 1 2 0.50 1 1 0
..............................................................AATCCCTGAGACCCTAACTT............................................................................................... 20 1 2 0.50 1 1 0
...............................................................TTCCCTGAGACCCTAACTTGTG............................................................................................ 22 1 2 0.50 1 1 0
.............................................................AAATCCCTGAGACCCTAACTTGT............................................................................................. 23 2 2 0.50 1 1 0
..............................................................ACTCCCTGAGACCCTAACTTGT............................................................................................. 22 1 2 0.50 1 1 0
...............................................................CTCCCTGAGACCCTAACTTGT............................................................................................. 21 1 2 0.50 1 1 0
................................................................TCCCTGAGACCCTAACTTTT............................................................................................. 20 1 2 0.50 1 0 1
................................................................TCCCTGAGACCCTAACTTGG............................................................................................. 20 1 2 0.50 1 0 1
................................................................TCCCTGAGACCATAACTTGT............................................................................................. 20 1 2 0.50 1 0 1
..................................................................CCTGAGACCCTAACTTGT............................................................................................. 18 0 2 0.50 1 1 0
................................................................TCCCTGAGACCCTAACTTGTGAAGC........................................................................................ 25 2 2 0.50 1 1 0
................................................................TCCCGGAGACCCTAACTTGT............................................................................................. 20 1 2 0.50 1 0 1
................................................................TCCCTGAGACCCTAAATTGT............................................................................................. 20 1 2 0.50 1 1 0
..............................................................AATCCCTGAGACCCTAACTTGTGA........................................................................................... 24 1 2 0.50 1 1 0
..............................................................TCTCCCTGAGACCCTAACTTGTG............................................................................................ 23 2 2 0.50 1 1 0
..............................................................GATCCCTGAGACCCTAACTTGT............................................................................................. 22 2 2 0.50 1 0 1
................................................................TCCATGAGACCCTAACTTGT............................................................................................. 20 1 2 0.50 1 0 1
..............................................................AATCCCTGGGACCCTAACTTGT............................................................................................. 22 2 2 0.50 1 0 1
................................................................TCCCTGAGACCCTAACTTGTGACGCC....................................................................................... 26 3 2 0.50 1 1 0
..........................................................ACTTTGTCCCTGAGACCCTAACTTGT............................................................................................. 26 3 2 0.50 1 1 0
................................................................GCCCTGAGACCCTAACTTGTG............................................................................................ 21 1 2 0.50 1 0 1
................................................................TCCCTGAGACCCTAACTTGA............................................................................................. 20 1 2 0.50 1 0 1
................................................................TCCCTGACACCCTAACTTGT............................................................................................. 20 1 2 0.50 1 1 0
................................................................TCCCTGAGACCCTAA.................................................................................................. 15 0 7 0.43 3 0 3
................................................................TCCCTGAGATCCTAACTTGT............................................................................................. 20 1 3 0.33 1 0 1
............................................................TTCATCCCTGAGACCCTAACTTGT............................................................................................. 24 3 3 0.33 1 1 0
...................................................................CTGAGACCCTAACTTGTGT........................................................................................... 19 1 6 0.33 2 0 2
............................................................AGGGTCCCTGAGACCCTAACTTGTG............................................................................................ 25 3 3 0.33 1 1 0
................................................................TCCTTGAGACCCTAACTTGT............................................................................................. 20 1 3 0.33 1 0 1
................................................................TCCCTGAGACGCTAACCTGT............................................................................................. 20 2 3 0.33 1 0 1
.......................................................................GACCCTAACTTGTGA........................................................................................... 15 0 3 0.33 1 0 1
................................................................TCCCTGAGACCCTCACTTGT............................................................................................. 20 1 3 0.33 1 0 1
....................................................................TGAGACCCTAACTTGTGT........................................................................................... 18 1 8 0.25 2 0 2
............................................................GGGGTCCCTGAGACCCTAACTTGT............................................................................................. 24 3 4 0.25 1 1 0
...............................................................ATCCCTGAGACCCTAACT................................................................................................ 18 1 5 0.20 1 0 1
..............................................................TTTCCCTGAGACCCTAACTTGT............................................................................................. 22 2 5 0.20 1 1 0
................................................................TCCCTCAGACCCTAACTT............................................................................................... 18 1 5 0.20 1 1 0
.............................................................ATATCCCTGAGACCCTAACTTGT............................................................................................. 23 3 7 0.14 1 1 0
................................................................TCCCTGAGGCCCTAACTT............................................................................................... 18 1 7 0.14 1 1 0

Anti-sense strand reads

TTAACGGACAGTAAGAACAAAACGAAACAAGACAGAGTTCTTTTTAAAGAACGCGAGGAGAGTCAGGGACTCTGGGATTGAACACTACAAATGGCAAATTTAGGTGCCCAATCCGAGAACCCTCGACGCTCAGCACGGAAACGTAGAACCTTTAAACCGCCTTGAAAAAAGGGGGAA
************************************..((((..(((.((((.(((((((.(((((((((((..(((((.....))))).))))))))))).))))))).)))).)))..))))....************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:27 AM