ID:

ocu-mir-124-2

 Coordinate:

chr3:80281766-80281874 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.6 -39.2 -38.9
mature
  1. chr2:40110277-40110298 +
  2. chr3:80281790-80281811 +
star
  1. chr2:40110316-40110336 +
  2. chr3:80281827-80281847 +

Sense Strand Reads

CAAGGATCTCGAGAAAGTGTGGTCGTCGCGGTGGGTCGGTTGCTTTCCGGATCAAGATCAGAGACTCTGCCCTCCGTGTTCACAGCGGACCTTGATTTAATGTCATACAATTAAGGCACGCGGTGAATGCCAAGAGCGGAGTCTACGGCTGCGCACGAAGGACACCAGAGCGTCTCAGGGTCAGAGAGCGGAATGGGCAGTTGCAGGCG
***********************************************************..(((((((((.((..((((((((.(((..((((((((...........))))))))..))).))))))))..)).)))))))))...************************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
...............................................................................................................TAAGGCACGCGGTGAATGCCAT............................................................................ 22 1 2 2.50 5 3 2
...............................................................................................................TAAGGCACGCGGTGAATGCCAAT........................................................................... 23 1 2 1.50 3 3 0
..........................................................................CGTGTTCACAGCGGACCTTGAT................................................................................................................. 22 0 2 1.50 3 3 0
...............................................................................................................TAAGGCACGCGGTGAATGCCA............................................................................. 21 0 2 1.50 3 2 1
...............................................................................................................TAAGGCACGCGGTGAATGCCAA............................................................................ 22 0 2 1.50 3 3 0
...............................................................................................................TAAGGCACGCGGTGAATGCC.............................................................................. 20 0 2 1.00 2 1 1
...............................................................................................................TAAGGCACGCGGTGAATGCCATTA.......................................................................... 24 2 2 1.00 2 2 0
...............................................................................................................TAAGGCACGCGGTGAATGCCATTT.......................................................................... 24 3 2 0.50 1 1 0
...............................................................................................................TAAGGCACGCGGGGAATGCCA............................................................................. 21 1 2 0.50 1 1 0
............................................................................................................GAATAAGGCACGCGGTGAATGCCA............................................................................. 24 2 2 0.50 1 0 1
...............................................................................................................TAAGGCACGCGGTGAATGC............................................................................... 19 0 2 0.50 1 1 0

Anti-sense strand reads

GTTCCTAGAGCTCTTTCACACCAGCAGCGCCACCCAGCCAACGAAAGGCCTAGTTCTAGTCTCTGAGACGGGAGGCACAAGTGTCGCCTGGAACTAAATTACAGTATGTTAATTCCGTGCGCCACTTACGGTTCTCGCCTCAGATGCCGACGCGTGCTTCCTGTGGTCTCGCAGAGTCCCAGTCTCTCGCCTTACCCGTCAACGTCCGC
**************************************************************..(((((((((.((..((((((((.(((..((((((((...........))))))))..))).))))))))..)).)))))))))...*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:44 AM