ID:

ocu-mir-107

 Coordinate:

chr18:37563519-37563605 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-35.3 -35.3 -35.3
mature
  1. chr18:37563534-37563554 -
  2. chr3:49920407-49920427 -
  3. chr4:10776396-10776416 +
star

Sense Strand Reads

CATCCTTGCAAATCACTGCAGATAAAATGCTCCCTTTGCAGTATTTGATATTCTCTCTGCTTTCAGCTTCTTTACAGTGTTGCCTTGTGGCATGGAGTTCAAGCAGCATTGTACAGGGCTATCAAAGCACAGAGAGCATGCTACAGCTGAGGCCAGCCAGAGCCCCAGGCACAAGAAGGGGTGGAGC
*************************************************.((((((.((((((.((((.((.(((((((((((.(((.(((.....))))))))))))))))).))))))...)))))).)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
.....................................................................................................AGCAGCATTGTACAGGGCTAT................................................................. 21 0 3 462.00 1386 835 551
.....................................................................................................AGCAGCATTGTACAGGGCT................................................................... 19 0 3 35.00 105 65 40
.....................................................................................................AGCAGCATTGTACAGGGCTA.................................................................. 20 0 3 30.00 90 57 33
.....................................................................................................AGCAGCATTGTACAGGGCTATC................................................................ 22 0 1 24.00 24 19 5
....................................................................................................AAGCAGCATTGTACAGGGCTAT................................................................. 22 0 3 13.67 41 18 23
.....................................................................................................AGCAGCATTGTACAGGGCTATCT............................................................... 23 1 1 9.00 9 9 0
.........................................................................................................GCATTGTACAGGGCTAT................................................................. 17 0 3 8.67 26 3 23
.....................................................................................................AGCAGCATTGTACAGGGCTATA................................................................ 22 1 3 5.00 15 5 10
.....................................................................................................AGCAGCATTGTACAGGGCTATCA............................................................... 23 0 1 5.00 5 4 1
......................................................................................................GCAGCATTGTACAGGGCTAT................................................................. 20 0 3 4.33 13 6 7
................................................................AGCTTCTTTACAGTGTTGCCTT..................................................................................................... 22 0 1 4.00 4 4 0
...............................................................CAGCTTCTTTACAGTGTTGCCTT..................................................................................................... 23 0 1 3.00 3 3 0
.......................................................................................................CAGCATTGTACAGGGCTAT................................................................. 19 0 3 2.67 8 1 7
..........................................................................................................CATTGTACAGGGCTAT................................................................. 16 0 4 2.25 9 0 9
...................................................................................................AAAGCAGCATTGTACAGGGCTAT................................................................. 23 1 3 2.00 6 6 0
.....................................................................................................AGCAGCATTGTACAGGGCTATCTC.............................................................. 24 2 1 2.00 2 0 2
................................................................AGCTTCTTTACAGTGTTGCCT...................................................................................................... 21 0 1 2.00 2 0 2
...............................................................CAGCTTCTTTACAGTGTTGCCTTGT................................................................................................... 25 0 1 2.00 2 2 0
.....................................................................................................AGCAGCATTGTACAGGGCTT.................................................................. 20 1 3 1.67 5 5 0
.........................................................................................................GCATTGTACAGGGCTA.................................................................. 16 0 3 1.67 5 3 2
.....................................................................................................AGCAGCATTGTACAGTGCTAT................................................................. 21 1 3 1.67 5 4 1
.....................................................................................................AGCAGCATTGTACAGGTCTAT................................................................. 21 1 3 1.67 5 4 1
.....................................................................................................AGCAGCATTGTACAGGGCTATT................................................................ 22 1 3 1.67 5 2 3
.....................................................................................................TGCAGCATTGTACAGGGCTAT................................................................. 21 1 3 1.33 4 1 3
.....................................................................................................AGCAGCCTTGTACAGGGCTAT................................................................. 21 1 3 1.33 4 3 1
.....................................................................................................AGCAGCGTTGTACAGGGCTAT................................................................. 21 1 3 1.33 4 2 2
.....................................................................................................AGCAGCATTGAACAGGGCTAT................................................................. 21 1 3 1.00 3 1 2
.........................................................................................................GCATTGTACAGGGCTATC................................................................ 18 0 1 1.00 1 0 1
.....................................................................................................AGCAGCATTGTACAGGGC.................................................................... 18 0 3 1.00 3 3 0
................................................................AGCTTCTTTACAGTGTTGCC....................................................................................................... 20 0 1 1.00 1 0 1
........................................................................................................AGCATTGTACAGGGCTATCATTGC........................................................... 24 2 1 1.00 1 0 1
.................................................................................................TAGAAGCAGCATTGTACAGGGCTAT................................................................. 25 2 1 1.00 1 0 1
....................................................................................................AAGCAGCATTGTACAGGGCTATT................................................................ 23 1 3 1.00 3 3 0
.....................................................................................................AGCAGCATTGTACAGGGCTATCAT.............................................................. 24 1 1 1.00 1 1 0
................................................................AGCTTCTTTACAGTGTTGCCTTT.................................................................................................... 23 1 1 1.00 1 0 1
.......................................................................................................CAGCATTGTACAGGGCTATC................................................................ 20 0 1 1.00 1 1 0
.....................................................................................................ATCAGCATTGTACAGGGCTA.................................................................. 20 1 3 1.00 3 3 0
.....................................................................................................AGCAGCATTGCACAGGGCTAT................................................................. 21 1 3 1.00 3 2 1
.....................................................................................................AGCAGCATTGTACAGGGCTAA................................................................. 21 1 3 1.00 3 1 2
.....................................................................................................AGCAGCATTGTACAGGGCTATATAACC........................................................... 27 3 1 1.00 1 0 1
....................................................................................................AAGCAGCATTGTACAGGGCT................................................................... 20 0 3 1.00 3 0 3
.....................................................................................................AGCAGCATTGGACAGGGCTAT................................................................. 21 1 3 1.00 3 1 2
.....................................................................................................AGCCGCATTGTACAGGGCTAT................................................................. 21 1 3 1.00 3 2 1
....................................................................................................AAGCAGCATTGTACAGGGCTA.................................................................. 21 0 3 0.67 2 0 2
.....................................................................................................AGCAGCATTGTACAGGG..................................................................... 17 0 3 0.67 2 2 0
.....................................................................................................AGCAGCATTGTACAGGGCTATTT............................................................... 23 2 3 0.67 2 0 2
.....................................................................................................AGCAGCATTGTACAGGGCTATAT............................................................... 23 2 3 0.67 2 2 0
....................................................................................................CAGCAGCATTGTACAGGGCTAT................................................................. 22 1 3 0.67 2 0 2
.....................................................................................................AGCAGCAATGTACAGGGCTAT................................................................. 21 1 3 0.67 2 1 1
.....................................................................................................AGCAGCATTGTGCAGGGCTAT................................................................. 21 1 3 0.67 2 1 1
.....................................................................................................CGCAGCATTGTACAGGGCTAT................................................................. 21 1 3 0.67 2 1 1
.........................................................................................................GCATTGTACAGGGCT................................................................... 15 0 7 0.57 4 1 3
.....................................................................................................AGAAGCATTGTACAGGGCTAT................................................................. 21 1 4 0.50 2 1 1
.....................................................................................................AGCAGCATTGTACAGGGCTATCATGC............................................................ 26 3 2 0.50 1 0 1
..........................................................................................................CATTGTACAGGGCTA.................................................................. 15 0 4 0.50 2 1 1
.................................................................GCTTCTTTACAGTGTTGCCT...................................................................................................... 20 0 2 0.50 1 0 1
...........................................................................................................ATTGTACAGGGCTAT................................................................. 15 0 7 0.43 3 3 0
.....................................................................................................AGTAGCATTGTACAGGGCTAT................................................................. 21 1 3 0.33 1 0 1
.....................................................................................................AGCAGCATTTTACAGGGCTAT................................................................. 21 1 3 0.33 1 0 1
......................................................................................................GCAGCATTGTACAGGGCTA.................................................................. 19 0 3 0.33 1 1 0
.....................................................................................................AGCAGCATTGTACAGGGCTTT................................................................. 21 1 3 0.33 1 0 1
.....................................................................................................AGCAGCATTGTCCAGGGCTAT................................................................. 21 1 3 0.33 1 1 0
.....................................................................................................GGCAGCATTGTACAGGGCTAT................................................................. 21 1 3 0.33 1 1 0
.....................................................................................................AGCAGCATTGTACTGGGCTAT................................................................. 21 1 3 0.33 1 1 0
......................................................................................................GCAGCATTGTACAGGGCT................................................................... 18 0 3 0.33 1 1 0
.....................................................................................................AGCAGCATTGTACAGGGCTAC................................................................. 21 1 3 0.33 1 0 1
.....................................................................................................AGCAGCATTGTACCGGGCTAT................................................................. 21 1 3 0.33 1 1 0
....................................................................................................AAGCAACATTGTACAGGGCTAT................................................................. 22 1 3 0.33 1 0 1
.....................................................................................................AGCAGCATTGTACCGGGCT................................................................... 19 1 3 0.33 1 1 0
.....................................................................................................AGCAGCATCGTACAGGGCTAT................................................................. 21 1 3 0.33 1 1 0
.....................................................................................................AGCAGCATTGTATAGGGCTAT................................................................. 21 1 3 0.33 1 0 1
....................................................................................................TAGCAGCATTGTACAGGGCTAT................................................................. 22 1 3 0.33 1 0 1
.....................................................................................................AGCAGCATTGTACGGGGCTAT................................................................. 21 1 3 0.33 1 0 1
.....................................................................................................AGCAGCATGGTACAGGGCTAT................................................................. 21 1 3 0.33 1 0 1
.....................................................................................................AGCAGCATTGTACAGGGGTAT................................................................. 21 1 3 0.33 1 0 1
.....................................................................................................AGCAGCATAGTACAGGGCTAT................................................................. 21 1 3 0.33 1 1 0
.......................................................................................................CAGCATTGTACAGGGCTA.................................................................. 18 0 3 0.33 1 0 1
.....................................................................................................AGCAGCATTCTACAGGGCTAT................................................................. 21 1 3 0.33 1 0 1
.....................................................................................................AGCAGTATTGTACAGGGCTAT................................................................. 21 1 3 0.33 1 1 0
.....................................................................................................AGCAGCATTGTACAGGGCTATTAT.............................................................. 24 2 3 0.33 1 1 0
........................................................................................................AGCATTGTACAGGGCTAT................................................................. 18 0 3 0.33 1 1 0
..................................................................................................GAAAGCAGCATTGTACAGGGCTAT................................................................. 24 2 3 0.33 1 0 1
......................................................................................................GCAGCATAGTACAGGGCTAT................................................................. 20 1 3 0.33 1 0 1
.....................................................................................................AGCAGCATTATACAGGGCTAT................................................................. 21 1 4 0.25 1 0 1
.....................................................................................................AGCAGCATTGTACAGGGCTAGA................................................................ 22 2 5 0.20 1 0 1
.....................................................................................................AGCAGCATTTTACAGGGCT................................................................... 19 1 5 0.20 1 0 1
........................................................................................................AGCATTGAACAGGGCTAT................................................................. 18 1 6 0.17 1 1 0
.....................................................................................................AGCAGCAATGTACAGGGCT................................................................... 19 1 9 0.11 1 0 1
.........................................................................................................GCATTGGACAGGGCTAT................................................................. 17 1 16 0.06 1 0 1

Anti-sense strand reads

GTAGGAACGTTTAGTGACGTCTATTTTACGAGGGAAACGTCATAAACTATAAGAGAGACGAAAGTCGAAGAAATGTCACAACGGAACACCGTACCTCAAGTTCGTCGTAACATGTCCCGATAGTTTCGTGTCTCTCGTACGATGTCGACTCCGGTCGGTCTCGGGGTCCGTGTTCTTCCCCACCTCG
**************************************************.((((((.((((((.((((.((.(((((((((((.(((.(((.....))))))))))))))))).))))))...)))))).)))))).************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:38 AM